data_6F24 # _entry.id 6F24 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6F24 pdb_00006f24 10.2210/pdb6f24/pdb WWPDB D_1200007358 ? ? BMRB 34202 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'PH domain from PfAPH' _pdbx_database_related.db_id 34202 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6F24 _pdbx_database_status.recvd_initial_deposition_date 2017-11-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Darvill, N.' 1 ? 'Liu, B.' 2 ? 'Matthews, S.' 3 ? 'Soldati-Favre, D.' 4 ? 'Rouse, S.' 5 ? 'Benjamin, S.' 6 ? 'Blake, T.' 7 ? 'Dubois, D.J.' 8 ? 'Hammoudi, P.M.' 9 ? 'Pino, P.' 10 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'C-terminal PH domain from P. falciparum acylated plekstrin homology domain containing protein (APH)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Darvill, N.' 1 ? primary 'Matthews, S.' 2 ? primary 'Liu, B.' 3 ? primary 'Soldati-Favre, D.' 4 ? primary 'Rouse, S.' 5 ? primary 'Benjamin, S.' 6 ? primary 'Blake, T.' 7 ? primary 'Dubois, D.J.' 8 ? primary 'Hammoudi, P.M.' 9 ? primary 'Pino, P.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'C-terminal PH domain from PfAPH' _entity.formula_weight 13905.197 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SAKDIKDEKIQQYRKTLTKIVKIKTAIFHETVKVTCSKDGKMLEWYKGKNDSDGKKKPIGSFPLNKITSIRTKVDNLKSL EISVSSVHISTYLFTFKTREERESWQNNLESFRKIMSMK ; _entity_poly.pdbx_seq_one_letter_code_can ;SAKDIKDEKIQQYRKTLTKIVKIKTAIFHETVKVTCSKDGKMLEWYKGKNDSDGKKKPIGSFPLNKITSIRTKVDNLKSL EISVSSVHISTYLFTFKTREERESWQNNLESFRKIMSMK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 LYS n 1 4 ASP n 1 5 ILE n 1 6 LYS n 1 7 ASP n 1 8 GLU n 1 9 LYS n 1 10 ILE n 1 11 GLN n 1 12 GLN n 1 13 TYR n 1 14 ARG n 1 15 LYS n 1 16 THR n 1 17 LEU n 1 18 THR n 1 19 LYS n 1 20 ILE n 1 21 VAL n 1 22 LYS n 1 23 ILE n 1 24 LYS n 1 25 THR n 1 26 ALA n 1 27 ILE n 1 28 PHE n 1 29 HIS n 1 30 GLU n 1 31 THR n 1 32 VAL n 1 33 LYS n 1 34 VAL n 1 35 THR n 1 36 CYS n 1 37 SER n 1 38 LYS n 1 39 ASP n 1 40 GLY n 1 41 LYS n 1 42 MET n 1 43 LEU n 1 44 GLU n 1 45 TRP n 1 46 TYR n 1 47 LYS n 1 48 GLY n 1 49 LYS n 1 50 ASN n 1 51 ASP n 1 52 SER n 1 53 ASP n 1 54 GLY n 1 55 LYS n 1 56 LYS n 1 57 LYS n 1 58 PRO n 1 59 ILE n 1 60 GLY n 1 61 SER n 1 62 PHE n 1 63 PRO n 1 64 LEU n 1 65 ASN n 1 66 LYS n 1 67 ILE n 1 68 THR n 1 69 SER n 1 70 ILE n 1 71 ARG n 1 72 THR n 1 73 LYS n 1 74 VAL n 1 75 ASP n 1 76 ASN n 1 77 LEU n 1 78 LYS n 1 79 SER n 1 80 LEU n 1 81 GLU n 1 82 ILE n 1 83 SER n 1 84 VAL n 1 85 SER n 1 86 SER n 1 87 VAL n 1 88 HIS n 1 89 ILE n 1 90 SER n 1 91 THR n 1 92 TYR n 1 93 LEU n 1 94 PHE n 1 95 THR n 1 96 PHE n 1 97 LYS n 1 98 THR n 1 99 ARG n 1 100 GLU n 1 101 GLU n 1 102 ARG n 1 103 GLU n 1 104 SER n 1 105 TRP n 1 106 GLN n 1 107 ASN n 1 108 ASN n 1 109 LEU n 1 110 GLU n 1 111 SER n 1 112 PHE n 1 113 ARG n 1 114 LYS n 1 115 ILE n 1 116 MET n 1 117 SER n 1 118 MET n 1 119 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 119 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PFTANZ_00863 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Plasmodium falciparum Tanzania (2000708)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1036725 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A024WCG0_PLAFA _struct_ref.pdbx_db_accession A0A024WCG0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SAKDIKDEKIQQYRKTLTKIVKIKTAIFHETVKVTCSKDGKMLEWYKGKNDSDGKKKPIGSFPLNKITSIRTKVDNLKSL EISVSSVHISTYLFTFKTREERESWQNNLESFRKIMSMK ; _struct_ref.pdbx_align_begin 117 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6F24 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 119 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A024WCG0 _struct_ref_seq.db_align_beg 117 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 235 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 12 _struct_ref_seq.pdbx_auth_seq_align_end 130 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '3D CBCA(CO)NH' 1 isotropic 3 1 1 '3D HNCACB' 1 isotropic 4 1 1 '3D HNCO' 1 isotropic 5 1 1 '3D HN(CO)CA' 1 isotropic 6 1 1 '3D HBHA(CO)NH' 1 isotropic 7 1 1 '3D C(CO)NH' 1 isotropic 9 1 1 '3D H(CCO)NH' 1 isotropic 8 1 1 '3D 1H-15N NOESY' 2 isotropic 10 1 1 '3D 1H-13C NOESY' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '300 NaCl' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 3D_NMR_conditions _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '830 uM [U-100% 15N]; [U-100% 13C] C-terminal PH domain from PfAPH, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 15N_13C_PfAPH _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 600 ? 2 DRX ? Bruker 800 ? # _pdbx_nmr_refine.entry_id 6F24 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6F24 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6F24 _pdbx_nmr_representative.conformer_id 5 _pdbx_nmr_representative.selection_criteria medoid # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement NMRView ? 'Brunger A. T. et.al.' 2 'structure calculation' ARIA ? ;Linge, O'Donoghue and Nilges ; 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 'peak picking' NMRView ? 'Johnson, One Moon Scientific' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6F24 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6F24 _struct.title 'PH domain from PfAPH' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6F24 _struct_keywords.text 'PH domain, phosphatidic acid binding, membrane association, LIPID BINDING PROTEIN' _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE A 5 ? THR A 18 ? ILE A 16 THR A 29 1 ? 14 HELX_P HELX_P2 AA2 THR A 98 ? SER A 117 ? THR A 109 SER A 128 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 62 ? PRO A 63 ? PHE A 73 PRO A 74 AA1 2 MET A 42 ? LYS A 47 ? MET A 53 LYS A 58 AA1 3 HIS A 29 ? CYS A 36 ? HIS A 40 CYS A 47 AA1 4 LYS A 19 ? LYS A 24 ? LYS A 30 LYS A 35 AA1 5 TYR A 92 ? THR A 95 ? TYR A 103 THR A 106 AA1 6 SER A 79 ? VAL A 84 ? SER A 90 VAL A 95 AA1 7 ILE A 67 ? THR A 72 ? ILE A 78 THR A 83 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O PHE A 62 ? O PHE A 73 N LEU A 43 ? N LEU A 54 AA1 2 3 O TYR A 46 ? O TYR A 57 N LYS A 33 ? N LYS A 44 AA1 3 4 O VAL A 32 ? O VAL A 43 N VAL A 21 ? N VAL A 32 AA1 4 5 N LYS A 22 ? N LYS A 33 O THR A 95 ? O THR A 106 AA1 5 6 O TYR A 92 ? O TYR A 103 N ILE A 82 ? N ILE A 93 AA1 6 7 O SER A 83 ? O SER A 94 N SER A 69 ? N SER A 80 # _atom_sites.entry_id 6F24 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 12 12 SER SER A . n A 1 2 ALA 2 13 13 ALA ALA A . n A 1 3 LYS 3 14 14 LYS LYS A . n A 1 4 ASP 4 15 15 ASP ASP A . n A 1 5 ILE 5 16 16 ILE ILE A . n A 1 6 LYS 6 17 17 LYS LYS A . n A 1 7 ASP 7 18 18 ASP ASP A . n A 1 8 GLU 8 19 19 GLU GLU A . n A 1 9 LYS 9 20 20 LYS LYS A . n A 1 10 ILE 10 21 21 ILE ILE A . n A 1 11 GLN 11 22 22 GLN GLN A . n A 1 12 GLN 12 23 23 GLN GLN A . n A 1 13 TYR 13 24 24 TYR TYR A . n A 1 14 ARG 14 25 25 ARG ARG A . n A 1 15 LYS 15 26 26 LYS LYS A . n A 1 16 THR 16 27 27 THR THR A . n A 1 17 LEU 17 28 28 LEU LEU A . n A 1 18 THR 18 29 29 THR THR A . n A 1 19 LYS 19 30 30 LYS LYS A . n A 1 20 ILE 20 31 31 ILE ILE A . n A 1 21 VAL 21 32 32 VAL VAL A . n A 1 22 LYS 22 33 33 LYS LYS A . n A 1 23 ILE 23 34 34 ILE ILE A . n A 1 24 LYS 24 35 35 LYS LYS A . n A 1 25 THR 25 36 36 THR THR A . n A 1 26 ALA 26 37 37 ALA ALA A . n A 1 27 ILE 27 38 38 ILE ILE A . n A 1 28 PHE 28 39 39 PHE PHE A . n A 1 29 HIS 29 40 40 HIS HIS A . n A 1 30 GLU 30 41 41 GLU GLU A . n A 1 31 THR 31 42 42 THR THR A . n A 1 32 VAL 32 43 43 VAL VAL A . n A 1 33 LYS 33 44 44 LYS LYS A . n A 1 34 VAL 34 45 45 VAL VAL A . n A 1 35 THR 35 46 46 THR THR A . n A 1 36 CYS 36 47 47 CYS CYS A . n A 1 37 SER 37 48 48 SER SER A . n A 1 38 LYS 38 49 49 LYS LYS A . n A 1 39 ASP 39 50 50 ASP ASP A . n A 1 40 GLY 40 51 51 GLY GLY A . n A 1 41 LYS 41 52 52 LYS LYS A . n A 1 42 MET 42 53 53 MET MET A . n A 1 43 LEU 43 54 54 LEU LEU A . n A 1 44 GLU 44 55 55 GLU GLU A . n A 1 45 TRP 45 56 56 TRP TRP A . n A 1 46 TYR 46 57 57 TYR TYR A . n A 1 47 LYS 47 58 58 LYS LYS A . n A 1 48 GLY 48 59 59 GLY GLY A . n A 1 49 LYS 49 60 60 LYS LYS A . n A 1 50 ASN 50 61 61 ASN ASN A . n A 1 51 ASP 51 62 62 ASP ASP A . n A 1 52 SER 52 63 63 SER SER A . n A 1 53 ASP 53 64 64 ASP ASP A . n A 1 54 GLY 54 65 65 GLY GLY A . n A 1 55 LYS 55 66 66 LYS LYS A . n A 1 56 LYS 56 67 67 LYS LYS A . n A 1 57 LYS 57 68 68 LYS LYS A . n A 1 58 PRO 58 69 69 PRO PRO A . n A 1 59 ILE 59 70 70 ILE ILE A . n A 1 60 GLY 60 71 71 GLY GLY A . n A 1 61 SER 61 72 72 SER SER A . n A 1 62 PHE 62 73 73 PHE PHE A . n A 1 63 PRO 63 74 74 PRO PRO A . n A 1 64 LEU 64 75 75 LEU LEU A . n A 1 65 ASN 65 76 76 ASN ASN A . n A 1 66 LYS 66 77 77 LYS LYS A . n A 1 67 ILE 67 78 78 ILE ILE A . n A 1 68 THR 68 79 79 THR THR A . n A 1 69 SER 69 80 80 SER SER A . n A 1 70 ILE 70 81 81 ILE ILE A . n A 1 71 ARG 71 82 82 ARG ARG A . n A 1 72 THR 72 83 83 THR THR A . n A 1 73 LYS 73 84 84 LYS LYS A . n A 1 74 VAL 74 85 85 VAL VAL A . n A 1 75 ASP 75 86 86 ASP ASP A . n A 1 76 ASN 76 87 87 ASN ASN A . n A 1 77 LEU 77 88 88 LEU LEU A . n A 1 78 LYS 78 89 89 LYS LYS A . n A 1 79 SER 79 90 90 SER SER A . n A 1 80 LEU 80 91 91 LEU LEU A . n A 1 81 GLU 81 92 92 GLU GLU A . n A 1 82 ILE 82 93 93 ILE ILE A . n A 1 83 SER 83 94 94 SER SER A . n A 1 84 VAL 84 95 95 VAL VAL A . n A 1 85 SER 85 96 96 SER SER A . n A 1 86 SER 86 97 97 SER SER A . n A 1 87 VAL 87 98 98 VAL VAL A . n A 1 88 HIS 88 99 99 HIS HIS A . n A 1 89 ILE 89 100 100 ILE ILE A . n A 1 90 SER 90 101 101 SER SER A . n A 1 91 THR 91 102 102 THR THR A . n A 1 92 TYR 92 103 103 TYR TYR A . n A 1 93 LEU 93 104 104 LEU LEU A . n A 1 94 PHE 94 105 105 PHE PHE A . n A 1 95 THR 95 106 106 THR THR A . n A 1 96 PHE 96 107 107 PHE PHE A . n A 1 97 LYS 97 108 108 LYS LYS A . n A 1 98 THR 98 109 109 THR THR A . n A 1 99 ARG 99 110 110 ARG ARG A . n A 1 100 GLU 100 111 111 GLU GLU A . n A 1 101 GLU 101 112 112 GLU GLU A . n A 1 102 ARG 102 113 113 ARG ARG A . n A 1 103 GLU 103 114 114 GLU GLU A . n A 1 104 SER 104 115 115 SER SER A . n A 1 105 TRP 105 116 116 TRP TRP A . n A 1 106 GLN 106 117 117 GLN GLN A . n A 1 107 ASN 107 118 118 ASN ASN A . n A 1 108 ASN 108 119 119 ASN ASN A . n A 1 109 LEU 109 120 120 LEU LEU A . n A 1 110 GLU 110 121 121 GLU GLU A . n A 1 111 SER 111 122 122 SER SER A . n A 1 112 PHE 112 123 123 PHE PHE A . n A 1 113 ARG 113 124 124 ARG ARG A . n A 1 114 LYS 114 125 125 LYS LYS A . n A 1 115 ILE 115 126 126 ILE ILE A . n A 1 116 MET 116 127 127 MET MET A . n A 1 117 SER 117 128 128 SER SER A . n A 1 118 MET 118 129 129 MET MET A . n A 1 119 LYS 119 130 130 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6850 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-12 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'C-terminal PH domain from PfAPH' _pdbx_nmr_exptl_sample.concentration 830 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units uM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 15N]; [U-100% 13C]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 41 ? ? HZ3 A LYS 60 ? ? 1.59 2 4 OE1 A GLU 41 ? ? HZ3 A LYS 60 ? ? 1.55 3 5 OE2 A GLU 41 ? ? HZ2 A LYS 60 ? ? 1.59 4 6 OE1 A GLU 41 ? ? HZ3 A LYS 60 ? ? 1.59 5 6 H1 A SER 12 ? ? OE1 A GLU 19 ? ? 1.59 6 9 OE2 A GLU 41 ? ? HZ3 A LYS 60 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 13 ? ? -131.36 -90.24 2 1 LYS A 14 ? ? -144.45 27.34 3 1 ASP A 15 ? ? -164.06 -41.12 4 1 ILE A 16 ? ? -86.32 -84.58 5 1 LYS A 58 ? ? -35.24 125.22 6 1 LYS A 60 ? ? -84.68 -74.02 7 1 ASN A 61 ? ? -177.01 -84.29 8 1 SER A 63 ? ? -90.49 46.38 9 1 LYS A 66 ? ? -150.96 -30.92 10 1 HIS A 99 ? ? -37.99 95.83 11 1 ILE A 100 ? ? 171.51 151.76 12 2 ALA A 13 ? ? 62.01 -89.93 13 2 ASP A 15 ? ? 72.43 42.16 14 2 ILE A 16 ? ? -92.91 -80.19 15 2 LYS A 58 ? ? -30.17 114.25 16 2 LYS A 60 ? ? -79.61 -72.39 17 2 ASN A 61 ? ? -170.43 -151.84 18 2 LYS A 67 ? ? 70.26 -6.72 19 2 ASN A 87 ? ? -161.66 79.23 20 2 HIS A 99 ? ? -37.97 93.52 21 2 ILE A 100 ? ? 171.12 147.15 22 3 ALA A 13 ? ? -159.78 -81.20 23 3 ILE A 16 ? ? -94.20 -85.24 24 3 LYS A 58 ? ? -36.70 118.80 25 3 LYS A 60 ? ? -72.70 -78.24 26 3 ASN A 61 ? ? -178.23 -151.46 27 3 SER A 63 ? ? -155.01 24.17 28 3 LYS A 67 ? ? 56.84 17.70 29 3 SER A 80 ? ? -160.39 119.89 30 3 ASN A 87 ? ? -170.41 91.76 31 3 HIS A 99 ? ? -37.73 96.73 32 3 ILE A 100 ? ? 170.64 154.29 33 3 MET A 129 ? ? -98.78 31.68 34 4 ALA A 13 ? ? -79.86 -85.04 35 4 ILE A 16 ? ? -95.79 -86.94 36 4 LYS A 58 ? ? -34.88 118.43 37 4 ASP A 62 ? ? -120.52 -80.06 38 4 HIS A 99 ? ? -39.66 97.73 39 4 ILE A 100 ? ? 168.40 164.51 40 4 MET A 129 ? ? -97.53 30.35 41 5 ALA A 13 ? ? -146.04 -71.45 42 5 LYS A 14 ? ? -169.34 27.08 43 5 ASP A 15 ? ? -168.96 -32.88 44 5 ILE A 16 ? ? -83.42 -82.36 45 5 LYS A 17 ? ? -75.06 -71.18 46 5 THR A 36 ? ? -127.72 -169.69 47 5 LYS A 58 ? ? -32.66 110.89 48 5 ASN A 61 ? ? -89.45 32.57 49 5 ASP A 62 ? ? -129.18 -155.60 50 5 LYS A 67 ? ? 59.55 14.71 51 5 SER A 80 ? ? -160.91 114.81 52 5 HIS A 99 ? ? -39.69 95.45 53 5 ILE A 100 ? ? 171.98 155.21 54 6 ALA A 13 ? ? -154.09 -53.82 55 6 LYS A 14 ? ? -145.87 -28.38 56 6 ASP A 15 ? ? -161.18 -0.39 57 6 ILE A 16 ? ? -71.93 -83.52 58 6 LYS A 58 ? ? -30.90 115.96 59 6 LYS A 60 ? ? -70.32 -72.10 60 6 ASN A 61 ? ? 179.19 -69.64 61 6 SER A 63 ? ? -160.83 86.78 62 6 HIS A 99 ? ? -39.10 96.95 63 6 ILE A 100 ? ? 172.16 177.93 64 6 MET A 129 ? ? -99.13 31.65 65 7 LYS A 14 ? ? -165.87 14.84 66 7 ASP A 15 ? ? -175.81 -53.55 67 7 ILE A 16 ? ? -53.13 -78.89 68 7 LYS A 58 ? ? -30.65 118.13 69 7 HIS A 99 ? ? -38.59 93.66 70 7 ILE A 100 ? ? 176.54 157.90 71 8 ALA A 13 ? ? -128.08 -88.67 72 8 LYS A 14 ? ? -107.22 74.42 73 8 ASP A 15 ? ? 77.89 -27.21 74 8 ILE A 16 ? ? -39.79 -79.26 75 8 LYS A 58 ? ? -35.92 119.16 76 8 LYS A 60 ? ? -69.83 -75.57 77 8 ASN A 61 ? ? -177.43 -73.37 78 8 ASP A 62 ? ? -141.37 -2.46 79 8 SER A 63 ? ? -84.05 35.43 80 8 HIS A 99 ? ? -42.43 98.42 81 8 ILE A 100 ? ? 169.81 170.69 82 8 MET A 129 ? ? -98.09 31.21 83 9 LYS A 14 ? ? -175.26 10.40 84 9 ASP A 15 ? ? 178.51 -48.42 85 9 ILE A 16 ? ? -62.21 -73.14 86 9 LYS A 58 ? ? -30.29 116.59 87 9 LYS A 60 ? ? -72.33 -70.84 88 9 ASN A 61 ? ? -179.10 -55.12 89 9 ASP A 62 ? ? -142.75 -35.29 90 9 SER A 63 ? ? -66.92 96.95 91 9 HIS A 99 ? ? -39.52 95.83 92 9 ILE A 100 ? ? 171.91 155.98 93 10 ALA A 13 ? ? -56.56 -82.85 94 10 ILE A 16 ? ? -93.79 -81.30 95 10 LYS A 58 ? ? -30.94 111.69 96 10 LYS A 60 ? ? -87.92 -80.62 97 10 ASN A 61 ? ? -174.01 -90.97 98 10 LYS A 67 ? ? 59.27 19.65 99 10 ASN A 87 ? ? -160.53 96.13 100 10 HIS A 99 ? ? -39.57 94.21 101 10 ILE A 100 ? ? 174.91 157.95 # _pdbx_audit_support.funding_organization 'Wellcome Trust' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 105394/Z/14/Z _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'Purifies as a single monomer under reducing conditions' #