HEADER TRANSPORT PROTEIN 24-NOV-17 6F2G TITLE BACTERIAL ASC TRANSPORTER CRYSTAL STRUCTURE IN OPEN TO IN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINO ACID/POLYAMINE TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NANOBODY 74; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARNOBACTERIUM SP. AT7; SOURCE 3 ORGANISM_TAXID: 333990; SOURCE 4 GENE: CAT7_03719; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTTQ18; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 12 ORGANISM_TAXID: 9844; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: WK6 (SU); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PMESY4 KEYWDS LEUT FOLD, LAT TRANSPORTER, APC TRANSPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.FORT,E.ERRASTI-MURUGARREN,X.CARPENA,M.PALACIN,I.FITA REVDAT 4 16-OCT-24 6F2G 1 REMARK REVDAT 3 17-JAN-24 6F2G 1 REMARK LINK REVDAT 2 01-MAY-19 6F2G 1 JRNL REVDAT 1 24-APR-19 6F2G 0 JRNL AUTH E.ERRASTI-MURUGARREN,J.FORT,P.BARTOCCIONI,L.DIAZ,E.PARDON, JRNL AUTH 2 X.CARPENA,M.ESPINO-GUARCH,A.ZORZANO,C.ZIEGLER,J.STEYAERT, JRNL AUTH 3 J.FERNANDEZ-RECIO,I.FITA,M.PALACIN JRNL TITL L AMINO ACID TRANSPORTER STRUCTURE AND MOLECULAR BASES FOR JRNL TITL 2 THE ASYMMETRY OF SUBSTRATE INTERACTION. JRNL REF NAT COMMUN V. 10 1807 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31000719 JRNL DOI 10.1038/S41467-019-09837-Z REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 74.1 REMARK 3 NUMBER OF REFLECTIONS : 19132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 374 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : 2.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.405 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.384 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 50.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.777 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4361 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4211 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5952 ; 1.965 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9697 ; 1.136 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 559 ; 5.764 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;43.490 ;23.014 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;21.124 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 705 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4806 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 916 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2242 ; 2.950 ; 5.400 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2241 ; 2.949 ; 5.399 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2799 ; 4.805 ; 8.096 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2800 ; 4.804 ; 8.097 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2119 ; 2.532 ; 5.581 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2117 ; 2.529 ; 5.580 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3153 ; 4.255 ; 8.295 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 18752 ; 9.085 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 18753 ; 9.086 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 433 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5829 -3.7752 -24.2373 REMARK 3 T TENSOR REMARK 3 T11: 1.1778 T22: 0.1359 REMARK 3 T33: 0.2345 T12: -0.0094 REMARK 3 T13: 0.2746 T23: -0.1518 REMARK 3 L TENSOR REMARK 3 L11: 3.2138 L22: 6.8879 REMARK 3 L33: 1.9900 L12: 0.8796 REMARK 3 L13: 0.0133 L23: 0.7828 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: 0.0857 S13: -0.1590 REMARK 3 S21: -1.4061 S22: 0.0793 S23: -0.2777 REMARK 3 S31: 0.1487 S32: 0.1255 S33: -0.0407 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3772 29.0857 -13.1502 REMARK 3 T TENSOR REMARK 3 T11: 0.7126 T22: 0.1539 REMARK 3 T33: 0.3230 T12: -0.0765 REMARK 3 T13: 0.2574 T23: -0.1955 REMARK 3 L TENSOR REMARK 3 L11: 4.1536 L22: 10.0541 REMARK 3 L33: 4.9920 L12: 0.0088 REMARK 3 L13: 0.2480 L23: -0.9131 REMARK 3 S TENSOR REMARK 3 S11: -0.1843 S12: -0.6647 S13: 0.6149 REMARK 3 S21: -1.4809 S22: 0.1991 S23: -0.2316 REMARK 3 S31: -0.3909 S32: -0.1853 S33: -0.0148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. FINAL ANISOTROPY CORRECTION WAS PERFORMED USING THE REMARK 3 DIFFRACTION ANISOTROPY SERVER (HTTPS://SERVICES.MBI.UCLA.EDU/ REMARK 3 ANISOSCALE/ REF. M. STRONG, M.R. SAWAYA, S. WANG, M. PHILLIPS, REMARK 3 D. CASCIO, D. EISENBERG, PROC NATL ACAD SCI USA. 103, 8060-8-65, REMARK 3 2006). REMARK 4 REMARK 4 6F2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200006177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO, AUTOPROC 1.0.5, REMARK 200 POINTLESS, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.920 REMARK 200 RESOLUTION RANGE LOW (A) : 83.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.88500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 4DJI, 4KRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28%PEG400 0,1M 0,1M AMMONIUM ACETATE REMARK 280 PH8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 160.84500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.91500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.42250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.91500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 241.26750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.91500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.91500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.42250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.91500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.91500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 241.26750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 160.84500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 434 REMARK 465 GLU A 435 REMARK 465 GLY A 436 REMARK 465 GLY A 437 REMARK 465 GLY A 438 REMARK 465 LEU A 439 REMARK 465 GLU A 440 REMARK 465 VAL A 441 REMARK 465 LEU A 442 REMARK 465 PHE A 443 REMARK 465 GLN A 444 REMARK 465 PRO B 132 REMARK 465 GLU B 133 REMARK 465 ALA B 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 380 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 MET B 34 CG - SD - CE ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP B 62 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 64 78.39 -116.00 REMARK 500 PRO A 65 89.56 -62.29 REMARK 500 THR A 67 30.06 -83.48 REMARK 500 MET A 70 -32.66 62.04 REMARK 500 ILE A 93 -66.04 -108.20 REMARK 500 ALA A 115 101.51 -59.51 REMARK 500 ASN A 206 14.70 -61.83 REMARK 500 PRO A 217 -78.11 -72.52 REMARK 500 MET A 220 -27.94 100.54 REMARK 500 LEU A 247 -166.59 -114.24 REMARK 500 THR A 257 78.28 -113.58 REMARK 500 MET A 306 -35.41 -28.09 REMARK 500 PHE A 309 44.33 -107.92 REMARK 500 PHE A 383 60.87 63.77 REMARK 500 ARG B 27 -73.96 72.81 REMARK 500 SER B 85 61.42 37.08 REMARK 500 THR B 91 106.57 -55.26 REMARK 500 HIS B 128 -146.62 167.45 REMARK 500 HIS B 129 87.62 38.12 REMARK 500 HIS B 130 -139.48 -82.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 265 NE2 REMARK 620 2 HIS B 125 NE2 59.5 REMARK 620 3 HIS B 127 NE2 58.6 1.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 DBREF 6F2G A 2 435 UNP A8UCQ5 A8UCQ5_9LACT 2 435 DBREF 6F2G B 1 134 PDB 6F2G 6F2G 1 134 SEQADV 6F2G MET A 1 UNP A8UCQ5 INITIATING METHIONINE SEQADV 6F2G GLY A 436 UNP A8UCQ5 EXPRESSION TAG SEQADV 6F2G GLY A 437 UNP A8UCQ5 EXPRESSION TAG SEQADV 6F2G GLY A 438 UNP A8UCQ5 EXPRESSION TAG SEQADV 6F2G LEU A 439 UNP A8UCQ5 EXPRESSION TAG SEQADV 6F2G GLU A 440 UNP A8UCQ5 EXPRESSION TAG SEQADV 6F2G VAL A 441 UNP A8UCQ5 EXPRESSION TAG SEQADV 6F2G LEU A 442 UNP A8UCQ5 EXPRESSION TAG SEQADV 6F2G PHE A 443 UNP A8UCQ5 EXPRESSION TAG SEQADV 6F2G GLN A 444 UNP A8UCQ5 EXPRESSION TAG SEQRES 1 A 444 MET LYS GLU VAL SER GLY ILE THR ALA LEU THR VAL VAL SEQRES 2 A 444 VAL GLY THR VAL ILE GLY ALA GLY ILE PHE PHE LYS PRO SEQRES 3 A 444 THR ALA VAL TYR GLY ALA ALA GLY ALA PRO GLY LEU GLY SEQRES 4 A 444 LEU LEU ALA TRP PHE VAL ALA GLY ILE ILE THR ILE ALA SEQRES 5 A 444 GLY GLY LEU THR VAL ALA GLU ILE GLY THR ILE TYR PRO SEQRES 6 A 444 GLN THR GLY GLY MET MET ILE TYR LEU GLU LYS VAL TYR SEQRES 7 A 444 GLY ARG TRP LEU GLY PHE LEU VAL GLY TRP ALA GLN MET SEQRES 8 A 444 VAL ILE TYR TYR PRO ALA ASN ILE ALA ALA LEU ALA ILE SEQRES 9 A 444 ILE PHE ALA THR GLN PHE VAL ASN LEU PHE ALA LEU SER SEQRES 10 A 444 ASP SER THR ILE VAL PRO THR ALA ILE LEU THR SER ILE SEQRES 11 A 444 PHE LEU MET GLY VAL ASN PHE LEU GLY THR LYS TYR SER SEQRES 12 A 444 GLY TRP ILE GLN THR LEU ALA THR ILE LEU LYS LEU ILE SEQRES 13 A 444 PRO LEU VAL VAL ILE ILE VAL ALA GLY LEU LEU TYR PRO SEQRES 14 A 444 GLY GLY GLY VAL ILE ARG LEU VAL PRO PHE SER VAL GLU SEQRES 15 A 444 THR HIS PRO VAL LEU THR SER PHE GLY SER ALA LEU ILE SEQRES 16 A 444 ALA THR LEU PHE ALA TYR ASP GLY TRP ILE ASN VAL GLY SEQRES 17 A 444 THR LEU ALA GLY GLU MET LYS ASN PRO GLY LYS MET LEU SEQRES 18 A 444 PRO LYS VAL ILE ILE GLY GLY LEU SER ILE VAL MET ALA SEQRES 19 A 444 VAL TYR LEU LEU THR ASN ILE ALA TYR LEU PHE VAL LEU SEQRES 20 A 444 ASP SER SER GLN LEU ALA GLY THR ASP THR PRO ALA ALA SEQRES 21 A 444 LEU VAL ALA SER HIS LEU PHE GLU GLY ILE GLY SER LYS SEQRES 22 A 444 LEU VAL THR ILE GLY ILE LEU ILE SER VAL PHE GLY GLY SEQRES 23 A 444 ILE ASN GLY TYR ILE ILE SER GLY LEU ARG VAL PRO TYR SEQRES 24 A 444 ALA LEU ALA THR GLN LYS MET LEU PRO PHE SER ASP TRP SEQRES 25 A 444 PHE ALA ARG ILE ASN PRO LYS THR ASN LEU PRO ILE ASN SEQRES 26 A 444 GLY GLY LEU VAL MET LEU GLY ILE ALA ILE VAL MET ILE SEQRES 27 A 444 LEU THR GLY GLN PHE ASN GLN LEU THR ASP LEU ILE VAL SEQRES 28 A 444 PHE VAL ILE TRP PHE PHE ILE THR LEU THR PHE ILE ALA SEQRES 29 A 444 VAL ILE ILE LEU ARG LYS THR GLN PRO ASP ILE GLU ARG SEQRES 30 A 444 PRO TYR ARG VAL PRO PHE TYR PRO VAL ILE PRO LEU ILE SEQRES 31 A 444 ALA ILE ILE GLY GLY LEU TYR ILE ILE PHE ASN THR LEU SEQRES 32 A 444 ILE VAL GLN PRO LYS ASN ALA PHE ILE GLY ILE LEU LEU SEQRES 33 A 444 THR LEU ILE GLY ILE PRO ILE TYR PHE TYR CYS LYS LYS SEQRES 34 A 444 LYS TYR GLY SER PRO GLU GLY GLY GLY LEU GLU VAL LEU SEQRES 35 A 444 PHE GLN SEQRES 1 B 134 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 B 134 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 134 ARG THR PHE SER SER ARG ALA MET GLY TRP PHE ARG GLN SEQRES 4 B 134 ALA PRO GLY GLU GLY ARG GLU PHE VAL ALA THR ILE SER SEQRES 5 B 134 TRP SER GLY SER TYR THR GLU TYR ALA ASP SER VAL LYS SEQRES 6 B 134 GLY ARG VAL THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 134 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLY ASP THR SEQRES 8 B 134 ALA VAL TYR HIS CYS ALA ALA LYS ASN GLY GLY ALA ALA SEQRES 9 B 134 SER ASN TYR PRO ASN ASP TYR VAL TYR TRP GLY GLN GLY SEQRES 10 B 134 THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS HIS SEQRES 11 B 134 GLU PRO GLU ALA HET ZN B 201 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ HELIX 1 AA1 VAL A 4 ILE A 18 1 15 HELIX 2 AA2 ALA A 20 LYS A 25 1 6 HELIX 3 AA3 LYS A 25 GLY A 34 1 10 HELIX 4 AA4 ALA A 35 TYR A 64 1 30 HELIX 5 AA5 GLY A 79 ILE A 93 1 15 HELIX 6 AA6 ILE A 93 PHE A 114 1 22 HELIX 7 AA7 THR A 120 LEU A 138 1 19 HELIX 8 AA8 GLY A 139 LYS A 154 1 16 HELIX 9 AA9 LEU A 155 LEU A 167 1 13 HELIX 10 AB1 GLY A 172 VAL A 177 5 6 HELIX 11 AB2 PRO A 185 LEU A 198 1 14 HELIX 12 AB3 PHE A 199 ASP A 202 5 4 HELIX 13 AB4 GLY A 203 ILE A 205 5 3 HELIX 14 AB5 ASN A 206 MET A 214 1 9 HELIX 15 AB6 MET A 220 LEU A 247 1 28 HELIX 16 AB7 ASP A 248 GLY A 254 1 7 HELIX 17 AB8 THR A 257 PHE A 267 1 11 HELIX 18 AB9 GLY A 269 LEU A 295 1 27 HELIX 19 AC1 LEU A 295 GLN A 304 1 10 HELIX 20 AC2 PHE A 309 ALA A 314 1 6 HELIX 21 AC3 PRO A 323 GLY A 341 1 19 HELIX 22 AC4 GLN A 342 GLN A 372 1 31 HELIX 23 AC5 PRO A 385 GLN A 406 1 22 HELIX 24 AC6 GLN A 406 ILE A 419 1 14 HELIX 25 AC7 ILE A 419 TYR A 431 1 13 HELIX 26 AC8 THR B 28 ARG B 32 5 5 HELIX 27 AC9 ASP B 62 LYS B 65 5 4 HELIX 28 AD1 LYS B 87 THR B 91 5 5 HELIX 29 AD2 TYR B 107 ASN B 109 5 3 SHEET 1 AA1 4 LEU B 4 SER B 7 0 SHEET 2 AA1 4 LEU B 18 ALA B 24 -1 O SER B 21 N SER B 7 SHEET 3 AA1 4 THR B 78 MET B 83 -1 O LEU B 81 N LEU B 20 SHEET 4 AA1 4 VAL B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA2 6 GLY B 10 GLN B 13 0 SHEET 2 AA2 6 THR B 118 SER B 123 1 O THR B 121 N VAL B 12 SHEET 3 AA2 6 ALA B 92 LYS B 99 -1 N TYR B 94 O THR B 118 SHEET 4 AA2 6 MET B 34 GLN B 39 -1 N PHE B 37 O HIS B 95 SHEET 5 AA2 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA2 6 THR B 58 TYR B 60 -1 O GLU B 59 N THR B 50 SHEET 1 AA3 4 GLY B 10 GLN B 13 0 SHEET 2 AA3 4 THR B 118 SER B 123 1 O THR B 121 N VAL B 12 SHEET 3 AA3 4 ALA B 92 LYS B 99 -1 N TYR B 94 O THR B 118 SHEET 4 AA3 4 TYR B 111 TRP B 114 -1 O TYR B 113 N ALA B 98 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.07 LINK NE2 HIS A 265 ZN ZN B 201 1555 1545 2.55 LINK NE2 HIS B 125 ZN ZN B 201 1555 1555 2.32 LINK NE2 HIS B 127 ZN ZN B 201 1555 1555 1.99 SITE 1 AC1 3 HIS A 265 HIS B 125 HIS B 127 CRYST1 85.830 85.830 321.690 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011651 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003109 0.00000