HEADER TRANSCRIPTION 24-NOV-17 6F2L TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN PPARGAMMA LBD AND THE LIGAND TITLE 2 LJ570: STRUCTURE OBTAINED FROM CRYSTALS OF THE APO-FORM SOAKED FOR 15 TITLE 3 DAYS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, COMPLEX WITH AN AGONIST, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.POCHETTI,M.MONTANARI REVDAT 3 07-FEB-24 6F2L 1 REMARK REVDAT 2 19-JUL-23 6F2L 1 JRNL REVDAT 1 10-JAN-18 6F2L 0 JRNL AUTH A.LAGHEZZA,L.PIEMONTESE,C.CERCHIA,R.MONTANARI,D.CAPELLI, JRNL AUTH 2 M.GIUDICI,M.CRESTANI,P.TORTORELLA,F.PEIRETTI,G.POCHETTI, JRNL AUTH 3 A.LAVECCHIA,F.LOIODICE JRNL TITL IDENTIFICATION OF THE FIRST PPAR ALPHA / GAMMA DUAL AGONIST JRNL TITL 2 ABLE TO BIND TO CANONICAL AND ALTERNATIVE SITES OF PPAR JRNL TITL 3 GAMMA AND TO INHIBIT ITS CDK5-MEDIATED PHOSPHORYLATION. JRNL REF J.MED.CHEM. V. 61 8282 2018 JRNL REFN ISSN 0022-2623 JRNL PMID 30199253 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00835 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.MONTANARI,F.SACCOCCIA,E.SCOTTI,M.CRESTANI,C.GODIO, REMARK 1 AUTH 2 F.GILARDI,F.LOIODICE,G.FRACCHIOLLA,A.LAGHEZZA,P.TORTORELLA, REMARK 1 AUTH 3 A.LAVECCHIA,E.NOVELLINO,F.MAZZA,M.ASCHI,G.POCHETTI REMARK 1 TITL CRYSTAL STRUCTURE OF THE PEROXISOME PROLIFERATOR-ACTIVATED REMARK 1 TITL 2 RECEPTOR GAMMA (PPARGAMMA) LIGAND BINDING DOMAIN COMPLEXED REMARK 1 TITL 3 WITH A NOVEL PARTIAL AGONIST: A NEW REGION OF THE REMARK 1 TITL 4 HYDROPHOBIC POCKET COULD BE EXPLOITED FOR DRUG DESIGN. REMARK 1 REF J. MED. CHEM. V. 51 7768 2008 REMARK 1 REFN ISSN 0022-2623 REMARK 1 PMID 19053776 REMARK 1 DOI 10.1021/JM800733H REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 37520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.8807 - 5.0603 0.96 2580 129 0.1905 0.2394 REMARK 3 2 5.0603 - 4.0168 0.97 2546 158 0.1831 0.2633 REMARK 3 3 4.0168 - 3.5091 0.97 2552 124 0.1985 0.2957 REMARK 3 4 3.5091 - 3.1883 0.98 2557 143 0.2295 0.3019 REMARK 3 5 3.1883 - 2.9598 0.98 2527 148 0.2642 0.3414 REMARK 3 6 2.9598 - 2.7853 0.99 2550 138 0.2582 0.3306 REMARK 3 7 2.7853 - 2.6458 0.97 2517 130 0.2665 0.3334 REMARK 3 8 2.6458 - 2.5306 0.98 2543 127 0.2939 0.3586 REMARK 3 9 2.5306 - 2.4332 0.98 2550 145 0.2939 0.3731 REMARK 3 10 2.4332 - 2.3492 0.98 2550 126 0.3269 0.3677 REMARK 3 11 2.3492 - 2.2758 0.98 2553 137 0.3412 0.3985 REMARK 3 12 2.2758 - 2.2107 0.98 2512 140 0.3983 0.4342 REMARK 3 13 2.2107 - 2.1525 0.97 2503 131 0.4221 0.4272 REMARK 3 14 2.1525 - 2.1000 0.98 2568 136 0.4656 0.4411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4216 REMARK 3 ANGLE : 0.997 5676 REMARK 3 CHIRALITY : 0.048 657 REMARK 3 PLANARITY : 0.006 717 REMARK 3 DIHEDRAL : 3.747 3092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 AND SI 220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37541 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 57.859 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3D6D REMARK 200 REMARK 200 REMARK: PRISMATIC SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M NA CITRATE, 0.15 M TRIS, PH 8.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.54500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.54500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 SER A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 SER A 184 REMARK 465 SER A 185 REMARK 465 GLY A 186 REMARK 465 LEU A 187 REMARK 465 VAL A 188 REMARK 465 PRO A 189 REMARK 465 ARG A 190 REMARK 465 GLY A 191 REMARK 465 SER A 192 REMARK 465 HIS A 193 REMARK 465 MET A 194 REMARK 465 ALA A 195 REMARK 465 GLU A 196 REMARK 465 ILE A 197 REMARK 465 SER A 198 REMARK 465 SER A 199 REMARK 465 ASP A 200 REMARK 465 ILE A 201 REMARK 465 ASP A 202 REMARK 465 GLN A 203 REMARK 465 LEU A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 ASP A 475 REMARK 465 LEU A 476 REMARK 465 TYR A 477 REMARK 465 MET B 174 REMARK 465 GLY B 175 REMARK 465 SER B 176 REMARK 465 SER B 177 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 465 HIS B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 SER B 184 REMARK 465 SER B 185 REMARK 465 GLY B 186 REMARK 465 LEU B 187 REMARK 465 VAL B 188 REMARK 465 PRO B 189 REMARK 465 ARG B 190 REMARK 465 GLY B 191 REMARK 465 SER B 192 REMARK 465 HIS B 193 REMARK 465 MET B 194 REMARK 465 ALA B 195 REMARK 465 GLU B 196 REMARK 465 ILE B 197 REMARK 465 SER B 198 REMARK 465 SER B 199 REMARK 465 ASP B 200 REMARK 465 ILE B 201 REMARK 465 ASP B 202 REMARK 465 GLN B 203 REMARK 465 LEU B 204 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 GLY B 239 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 THR B 461 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 LYS B 474 REMARK 465 ASP B 475 REMARK 465 LEU B 476 REMARK 465 TYR B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 LYS B 240 CB CG CD CE NZ REMARK 470 LYS B 244 CB CG CD CE NZ REMARK 470 LYS B 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 253 O HOH B 501 1.89 REMARK 500 NZ LYS B 216 OD1 ASP B 220 2.00 REMARK 500 O GLY B 321 CD1 ILE B 325 2.06 REMARK 500 N GLY A 395 O HOH A 601 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 242 74.05 -65.60 REMARK 500 LYS A 244 109.44 177.57 REMARK 500 LYS A 263 96.89 -66.67 REMARK 500 GLU A 276 -169.59 -76.15 REMARK 500 SER A 342 58.29 38.37 REMARK 500 LYS A 358 -56.13 -22.38 REMARK 500 PHE A 363 -54.61 -143.51 REMARK 500 SER A 394 -76.51 -73.85 REMARK 500 SER B 208 -59.67 -20.24 REMARK 500 LEU B 237 -160.41 -72.31 REMARK 500 THR B 241 82.72 -8.96 REMARK 500 ASP B 243 -35.49 -156.29 REMARK 500 MET B 256 -170.54 -64.45 REMARK 500 MET B 257 -64.43 60.36 REMARK 500 ASP B 310 134.44 -39.94 REMARK 500 SER B 342 70.84 57.00 REMARK 500 ARG B 357 -178.21 -45.21 REMARK 500 LYS B 358 -87.01 -31.90 REMARK 500 ALA B 376 -8.38 -57.34 REMARK 500 LEU B 393 46.50 -75.21 REMARK 500 SER B 394 -90.48 -62.66 REMARK 500 LYS B 457 4.01 -68.22 REMARK 500 THR B 459 -54.52 -143.57 REMARK 500 PRO B 467 -64.27 -7.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AXY A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JL4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH THE SAME LIGAND WITH DIFFERENT TIME OF REMARK 900 SOAKING (3 DAYS) DBREF 6F2L A 195 477 UNP P37231 PPARG_HUMAN 223 505 DBREF 6F2L B 195 477 UNP P37231 PPARG_HUMAN 223 505 SEQADV 6F2L MET A 174 UNP P37231 INITIATING METHIONINE SEQADV 6F2L GLY A 175 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER A 176 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER A 177 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS A 178 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS A 179 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS A 180 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS A 181 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS A 182 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS A 183 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER A 184 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER A 185 UNP P37231 EXPRESSION TAG SEQADV 6F2L GLY A 186 UNP P37231 EXPRESSION TAG SEQADV 6F2L LEU A 187 UNP P37231 EXPRESSION TAG SEQADV 6F2L VAL A 188 UNP P37231 EXPRESSION TAG SEQADV 6F2L PRO A 189 UNP P37231 EXPRESSION TAG SEQADV 6F2L ARG A 190 UNP P37231 EXPRESSION TAG SEQADV 6F2L GLY A 191 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER A 192 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS A 193 UNP P37231 EXPRESSION TAG SEQADV 6F2L MET A 194 UNP P37231 EXPRESSION TAG SEQADV 6F2L MET B 174 UNP P37231 INITIATING METHIONINE SEQADV 6F2L GLY B 175 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER B 176 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER B 177 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS B 178 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS B 179 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS B 180 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS B 181 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS B 182 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS B 183 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER B 184 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER B 185 UNP P37231 EXPRESSION TAG SEQADV 6F2L GLY B 186 UNP P37231 EXPRESSION TAG SEQADV 6F2L LEU B 187 UNP P37231 EXPRESSION TAG SEQADV 6F2L VAL B 188 UNP P37231 EXPRESSION TAG SEQADV 6F2L PRO B 189 UNP P37231 EXPRESSION TAG SEQADV 6F2L ARG B 190 UNP P37231 EXPRESSION TAG SEQADV 6F2L GLY B 191 UNP P37231 EXPRESSION TAG SEQADV 6F2L SER B 192 UNP P37231 EXPRESSION TAG SEQADV 6F2L HIS B 193 UNP P37231 EXPRESSION TAG SEQADV 6F2L MET B 194 UNP P37231 EXPRESSION TAG SEQRES 1 A 304 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 304 LEU VAL PRO ARG GLY SER HIS MET ALA GLU ILE SER SER SEQRES 3 A 304 ASP ILE ASP GLN LEU ASN PRO GLU SER ALA ASP LEU ARG SEQRES 4 A 304 ALA LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SER SEQRES 5 A 304 PHE PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU THR SEQRES 6 A 304 GLY LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR ASP SEQRES 7 A 304 MET ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS PHE SEQRES 8 A 304 LYS HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU VAL SEQRES 9 A 304 ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER VAL SEQRES 10 A 304 GLU ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER ILE SEQRES 11 A 304 PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL THR SEQRES 12 A 304 LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR MET SEQRES 13 A 304 LEU ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SER SEQRES 14 A 304 GLU GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SER SEQRES 15 A 304 LEU ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS PHE SEQRES 16 A 304 GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SEQRES 17 A 304 SER ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SER SEQRES 18 A 304 GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU SEQRES 19 A 304 ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN SEQRES 20 A 304 LEU LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE ALA SEQRES 21 A 304 LYS LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE VAL SEQRES 22 A 304 THR GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS THR SEQRES 23 A 304 GLU THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU ILE SEQRES 24 A 304 TYR LYS ASP LEU TYR SEQRES 1 B 304 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 304 LEU VAL PRO ARG GLY SER HIS MET ALA GLU ILE SER SER SEQRES 3 B 304 ASP ILE ASP GLN LEU ASN PRO GLU SER ALA ASP LEU ARG SEQRES 4 B 304 ALA LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SER SEQRES 5 B 304 PHE PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU THR SEQRES 6 B 304 GLY LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR ASP SEQRES 7 B 304 MET ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS PHE SEQRES 8 B 304 LYS HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU VAL SEQRES 9 B 304 ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER VAL SEQRES 10 B 304 GLU ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER ILE SEQRES 11 B 304 PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL THR SEQRES 12 B 304 LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR MET SEQRES 13 B 304 LEU ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SER SEQRES 14 B 304 GLU GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SER SEQRES 15 B 304 LEU ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS PHE SEQRES 16 B 304 GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SEQRES 17 B 304 SER ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SER SEQRES 18 B 304 GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU SEQRES 19 B 304 ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN SEQRES 20 B 304 LEU LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE ALA SEQRES 21 B 304 LYS LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE VAL SEQRES 22 B 304 THR GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS THR SEQRES 23 B 304 GLU THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU ILE SEQRES 24 B 304 TYR LYS ASP LEU TYR HET AXY A 501 30 HETNAM AXY (2S)-3-(BIPHENYL-4-YL)-2-(BIPHENYL-4-YLOXY)PROPANOIC HETNAM 2 AXY ACID FORMUL 3 AXY C27 H22 O3 FORMUL 4 HOH *151(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 ILE A 262 1 12 HELIX 4 AA4 GLU A 276 SER A 302 1 27 HELIX 5 AA5 GLY A 305 LEU A 309 5 5 HELIX 6 AA6 ASP A 310 ALA A 331 1 22 HELIX 7 AA7 SER A 342 GLY A 344 5 3 HELIX 8 AA8 ARG A 350 LEU A 356 1 7 HELIX 9 AA9 MET A 364 ALA A 376 1 13 HELIX 10 AB1 ASP A 380 LEU A 393 1 14 HELIX 11 AB2 ASN A 402 HIS A 425 1 24 HELIX 12 AB3 GLN A 430 GLU A 460 1 31 HELIX 13 AB4 HIS A 466 TYR A 473 1 8 HELIX 14 AB5 SER B 208 PHE B 226 1 19 HELIX 15 AB6 THR B 229 LEU B 237 1 9 HELIX 16 AB7 ASP B 251 ILE B 262 1 12 HELIX 17 AB8 GLU B 276 LYS B 301 1 26 HELIX 18 AB9 ASP B 310 LEU B 333 1 24 HELIX 19 AC1 ARG B 350 SER B 355 1 6 HELIX 20 AC2 PRO B 359 PHE B 363 5 5 HELIX 21 AC3 MET B 364 ALA B 376 1 13 HELIX 22 AC4 ASP B 380 LEU B 393 1 14 HELIX 23 AC5 ASN B 402 HIS B 425 1 24 HELIX 24 AC6 GLN B 430 LYS B 457 1 28 HELIX 25 AC7 PRO B 467 TYR B 473 1 7 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 AA2 4 PHE B 247 ILE B 249 0 SHEET 2 AA2 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 AA2 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 AA2 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 SITE 1 AC1 14 PHE A 282 GLN A 283 CYS A 285 GLN A 286 SITE 2 AC1 14 SER A 289 HIS A 323 TYR A 327 LEU A 330 SITE 3 AC1 14 PHE A 363 MET A 364 HIS A 449 MET A 463 SITE 4 AC1 14 LEU A 469 TYR A 473 CRYST1 93.090 61.480 118.690 90.00 102.85 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010742 0.000000 0.002450 0.00000 SCALE2 0.000000 0.016265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008642 0.00000