HEADER TRANSFERASE 27-NOV-17 6F2X TITLE STRUCTURAL CHARACTERIZATION OF THE MYCOBACTERIUM TUBERCULOSIS PROTEIN TITLE 2 TYROSINE KINASE A (PTKA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TYROSINE KINASE A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 ATCC: 25618 / H37RV; SOURCE 6 GENE: RV2232, MTCY427.13/MTCY427.14; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS TYROSINE KINASE PHOSPHORYLATION MYCOBACTERIUM TUBERCULOSIS, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.NIESTERUK,H.R.A.JONKER,S.SREERAMULU,C.RICHTER,M.HUTCHISON, AUTHOR 2 V.LINHARD,H.SCHWALBE REVDAT 5 14-JUN-23 6F2X 1 REMARK REVDAT 4 11-SEP-19 6F2X 1 REMARK REVDAT 3 08-MAY-19 6F2X 1 REMARK REVDAT 2 08-AUG-18 6F2X 1 JRNL REVDAT 1 04-JUL-18 6F2X 0 JRNL AUTH A.NIESTERUK,H.R.A.JONKER,C.RICHTER,V.LINHARD,S.SREERAMULU, JRNL AUTH 2 H.SCHWALBE JRNL TITL THE DOMAIN ARCHITECTURE OF PTKA, THE FIRST TYROSINE KINASE JRNL TITL 2 FROMMYCOBACTERIUM TUBERCULOSIS, DIFFERS FROM THE JRNL TITL 3 CONVENTIONAL KINASE ARCHITECTURE. JRNL REF J. BIOL. CHEM. V. 293 11823 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29884774 JRNL DOI 10.1074/JBC.RA117.000120 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.NIESTERUK,M.HUTCHISON,S.SREERAMULU,H.R.A.JONKER,C.RICHTER, REMARK 1 AUTH 2 R.ABELE,C.BOCK,H.SCHWALBE REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF THE INTRINSICALLY DISORDERED REMARK 1 TITL 2 DOMAIN OF MYCOBACTERIUM TUBERCULOSIS PROTEIN TYROSINE KINASE REMARK 1 TITL 3 A. REMARK 1 REF FEBS LETT. V. 592 1233 2018 REMARK 1 REFN ISSN 1873-3468 REMARK 1 PMID 29494752 REMARK 1 DOI 10.1002/1873-3468.13022 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97, CNS 1.1, ARIA 1.2 HJ DEVELOPMENT REMARK 3 VERSION REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION REMARK 4 REMARK 4 6F2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007556. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.5; 2 REMARK 210 IONIC STRENGTH : 354; 330 REMARK 210 PRESSURE : AMBIENT MBAR; AMBIENT MBAR REMARK 210 SAMPLE CONTENTS : 0.2 MM [U-15N] PTKA, 50 MM REMARK 210 HEPES, 300 MM SODIUM CHLORIDE, REMARK 210 10 MM DTT, 10 MM MAGNESIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 0.2 REMARK 210 MM [U-13C; U-15N] PTKA, 50 MM REMARK 210 HEPES, 300 MM SODIUM CHLORIDE, REMARK 210 10 MM DTT, 10 MM MAGNESIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 0.2 REMARK 210 MM [U-13C; U-15N; U-2H] PTKA, 50 REMARK 210 MM HEPES, 300 MM SODIUM CHLORIDE, REMARK 210 10 MM DTT, 10 MM MAGNESIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; 0.3 REMARK 210 MM [U-15N] PTKA, 50 MM HEPES, REMARK 210 300 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 10 MM MAGNESIUM CHLORIDE, REMARK 210 90% H2O/10% D2O; 0.3 MM [U-13C; REMARK 210 U-15N] PTKA, 50 MM HEPES, 300 MM REMARK 210 SODIUM CHLORIDE, 10 MM DTT, 10 REMARK 210 MM MAGNESIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNHA; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D HNCACB; 3D REMARK 210 HN(COCA)CB; 3D HNCO; 3D HCC(CO) REMARK 210 NH; 3D CC(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-15N HETNOE; 2D REMARK 210 1H-15N T1; 2D 1H-15N T2; 2D 1H- REMARK 210 15N IPAP-HSQC; 3D HN(CA)NNH; 3D REMARK 210 HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ; 900 REMARK 210 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2, SPARKY 3.114 REMARK 210 METHOD USED : SIMULATED ANNEALING WITH TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 181 HG1 THR A 182 1.56 REMARK 500 HZ2 LYS A 217 OD1 ASP A 246 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 8 TYR A 262 CE1 TYR A 262 CZ -0.117 REMARK 500 8 TYR A 262 CZ TYR A 262 CE2 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 77 57.97 -91.08 REMARK 500 1 PRO A 79 -166.51 -75.08 REMARK 500 1 MET A 157 46.69 -98.60 REMARK 500 1 LEU A 160 -8.02 -156.15 REMARK 500 1 PHE A 161 106.59 -56.51 REMARK 500 1 ASP A 162 -150.31 -173.16 REMARK 500 1 THR A 182 132.65 -174.68 REMARK 500 1 ALA A 185 123.06 -175.89 REMARK 500 1 ARG A 214 -179.82 71.99 REMARK 500 1 ASP A 240 -9.65 -150.87 REMARK 500 1 ALA A 265 35.91 -85.31 REMARK 500 1 VAL A 276 141.96 -175.67 REMARK 500 2 PRO A 79 -162.94 -77.18 REMARK 500 2 ASP A 87 -154.22 -158.13 REMARK 500 2 GLU A 114 30.16 -96.78 REMARK 500 2 LYS A 184 -78.07 -112.40 REMARK 500 2 LYS A 217 48.29 -88.95 REMARK 500 2 ARG A 264 -49.25 -163.00 REMARK 500 2 ALA A 265 31.46 -87.58 REMARK 500 2 LYS A 270 -81.09 -167.66 REMARK 500 3 LEU A 86 -60.27 -107.34 REMARK 500 3 GLU A 137 58.36 -94.79 REMARK 500 3 SER A 138 24.33 -144.15 REMARK 500 3 LYS A 184 -91.80 -94.12 REMARK 500 3 ASP A 211 95.70 67.80 REMARK 500 3 ASP A 240 -48.11 -147.44 REMARK 500 3 TRP A 260 -39.45 71.58 REMARK 500 3 ALA A 265 37.09 -92.02 REMARK 500 3 ILE A 268 53.81 -111.83 REMARK 500 3 LYS A 270 26.48 -150.17 REMARK 500 4 PRO A 79 -161.74 -69.73 REMARK 500 4 ALA A 94 -59.27 -28.31 REMARK 500 4 PHE A 161 -17.09 -147.92 REMARK 500 4 ASP A 162 -90.02 -66.83 REMARK 500 4 SER A 183 161.69 175.83 REMARK 500 4 ALA A 185 138.05 -174.85 REMARK 500 4 LYS A 217 -85.91 -122.65 REMARK 500 4 ARG A 229 152.28 -45.76 REMARK 500 4 ASP A 240 11.85 -162.95 REMARK 500 5 PRO A 79 -161.12 -70.22 REMARK 500 5 ASP A 116 36.48 -87.08 REMARK 500 5 PHE A 161 10.11 -158.36 REMARK 500 5 GLU A 203 -70.45 -69.45 REMARK 500 5 THR A 210 75.04 69.69 REMARK 500 5 SER A 213 -177.87 -176.74 REMARK 500 5 SER A 216 -37.55 68.08 REMARK 500 5 LYS A 217 -161.30 -75.08 REMARK 500 5 ASP A 240 -44.74 -157.51 REMARK 500 5 ARG A 241 154.42 -48.97 REMARK 500 5 SER A 242 -75.68 -51.06 REMARK 500 REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34204 RELATED DB: BMRB REMARK 900 STRUCTURAL CHARACTERIZATION OF THE MYCOBACTERIUM TUBERCULOSIS REMARK 900 PROTEIN TYROSINE KINASE A (PTKA) REMARK 900 RELATED ID: 34300 RELATED DB: BMRB REMARK 900 STRUCTURAL CHARACTERIZATION OF THE MYCOBACTERIUM TUBERCULOSIS REMARK 900 PROTEIN TYROSINE KINASE A (PTKA) DBREF 6F2X A 76 291 UNP P9WPI9 Y2232_MYCTU 76 291 SEQRES 1 A 216 GLY GLU SER PRO GLN LEU VAL ILE PHE ASP LEU ASP GLY SEQRES 2 A 216 THR LEU THR ASP SER ALA ARG GLY ILE VAL SER SER PHE SEQRES 3 A 216 ARG HIS ALA LEU ASN HIS ILE GLY ALA PRO VAL PRO GLU SEQRES 4 A 216 GLY ASP LEU ALA THR HIS ILE VAL GLY PRO PRO MET HIS SEQRES 5 A 216 GLU THR LEU ARG ALA MET GLY LEU GLY GLU SER ALA GLU SEQRES 6 A 216 GLU ALA ILE VAL ALA TYR ARG ALA ASP TYR SER ALA ARG SEQRES 7 A 216 GLY TRP ALA MET ASN SER LEU PHE ASP GLY ILE GLY PRO SEQRES 8 A 216 LEU LEU ALA ASP LEU ARG THR ALA GLY VAL ARG LEU ALA SEQRES 9 A 216 VAL ALA THR SER LYS ALA GLU PRO THR ALA ARG ARG ILE SEQRES 10 A 216 LEU ARG HIS PHE GLY ILE GLU GLN HIS PHE GLU VAL ILE SEQRES 11 A 216 ALA GLY ALA SER THR ASP GLY SER ARG GLY SER LYS VAL SEQRES 12 A 216 ASP VAL LEU ALA HIS ALA LEU ALA GLN LEU ARG PRO LEU SEQRES 13 A 216 PRO GLU ARG LEU VAL MET VAL GLY ASP ARG SER HIS ASP SEQRES 14 A 216 VAL ASP GLY ALA ALA ALA HIS GLY ILE ASP THR VAL VAL SEQRES 15 A 216 VAL GLY TRP GLY TYR GLY ARG ALA ASP PHE ILE ASP LYS SEQRES 16 A 216 THR SER THR THR VAL VAL THR HIS ALA ALA THR ILE ASP SEQRES 17 A 216 GLU LEU ARG GLU ALA LEU GLY VAL HELIX 1 AA1 ASP A 92 ILE A 108 1 17 HELIX 2 AA2 ASP A 116 ILE A 121 1 6 HELIX 3 AA3 PRO A 125 MET A 133 1 9 HELIX 4 AA4 SER A 138 ARG A 153 1 16 HELIX 5 AA5 GLY A 154 MET A 157 5 4 HELIX 6 AA6 GLY A 163 GLY A 175 1 13 HELIX 7 AA7 ALA A 185 GLY A 197 1 13 HELIX 8 AA8 ILE A 198 PHE A 202 5 5 HELIX 9 AA9 VAL A 218 LEU A 228 1 11 HELIX 10 AB1 ARG A 241 HIS A 251 1 11 HELIX 11 AB2 THR A 281 GLY A 290 1 10 SHEET 1 AA1 6 ILE A 205 ALA A 206 0 SHEET 2 AA1 6 ARG A 177 ALA A 181 1 N VAL A 180 O ALA A 206 SHEET 3 AA1 6 LEU A 81 PHE A 84 1 N PHE A 84 O ALA A 179 SHEET 4 AA1 6 LEU A 235 GLY A 239 1 O VAL A 236 N ILE A 83 SHEET 5 AA1 6 ASP A 254 VAL A 258 1 O VAL A 258 N GLY A 239 SHEET 6 AA1 6 THR A 277 ALA A 279 1 O ALA A 279 N VAL A 257 CISPEP 1 ARG A 229 PRO A 230 1 1.39 CISPEP 2 ARG A 229 PRO A 230 2 0.75 CISPEP 3 ARG A 229 PRO A 230 3 1.22 CISPEP 4 ARG A 229 PRO A 230 4 2.04 CISPEP 5 ARG A 229 PRO A 230 5 1.85 CISPEP 6 ARG A 229 PRO A 230 6 3.65 CISPEP 7 ARG A 229 PRO A 230 7 1.71 CISPEP 8 ARG A 229 PRO A 230 8 1.55 CISPEP 9 ARG A 229 PRO A 230 9 2.56 CISPEP 10 ARG A 229 PRO A 230 10 1.67 CISPEP 11 ARG A 229 PRO A 230 11 3.16 CISPEP 12 ARG A 229 PRO A 230 12 0.95 CISPEP 13 ARG A 229 PRO A 230 13 1.68 CISPEP 14 ARG A 229 PRO A 230 14 1.49 CISPEP 15 ARG A 229 PRO A 230 15 2.44 CISPEP 16 ARG A 229 PRO A 230 16 3.22 CISPEP 17 ARG A 229 PRO A 230 17 2.36 CISPEP 18 ARG A 229 PRO A 230 18 1.96 CISPEP 19 ARG A 229 PRO A 230 19 0.90 CISPEP 20 ARG A 229 PRO A 230 20 1.92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1