HEADER HYDROLASE 28-NOV-17 6F39 TITLE C1R HOMODIMER CUB1-EGF-CUB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C1R SUBCOMPONENT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COMPLEMENT COMPONENT 1 SUBCOMPONENT R; COMPND 5 EC: 3.4.21.41; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C1R; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS CUB DOMAIN, EGF-LIKE DOMAIN, COMPLEMENT, C1R, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.O.M.ALMITAIRI,U.VENKATRAMAN GIRIJA,C.M.FURZE,X.SIMPSON-GRAY, AUTHOR 2 F.BADAKSHI,J.E.MARSHALL,D.A.MITCHELL,P.C.E.MOODY,R.WALLIS REVDAT 3 29-JUL-20 6F39 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 31-JAN-18 6F39 1 JRNL REVDAT 1 24-JAN-18 6F39 0 JRNL AUTH J.O.M.ALMITAIRI,U.VENKATRAMAN GIRIJA,C.M.FURZE, JRNL AUTH 2 X.SIMPSON-GRAY,F.BADAKSHI,J.E.MARSHALL,W.J.SCHWAEBLE, JRNL AUTH 3 D.A.MITCHELL,P.C.E.MOODY,R.WALLIS JRNL TITL STRUCTURE OF THE C1R-C1S INTERACTION OF THE C1 COMPLEX OF JRNL TITL 2 COMPLEMENT ACTIVATION. JRNL REF PROC. NATL. ACAD. SCI. V. 115 768 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29311313 JRNL DOI 10.1073/PNAS.1718709115 REMARK 2 REMARK 2 RESOLUTION. 5.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2722 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 5.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 2986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.310 REMARK 3 R VALUE (WORKING SET) : 0.308 REMARK 3 FREE R VALUE : 0.338 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.350 REMARK 3 FREE R VALUE TEST SET COUNT : 130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.0658 - 5.8011 0.99 2856 130 0.3081 0.3379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 133.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 351.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4747 REMARK 3 ANGLE : 1.357 6449 REMARK 3 CHIRALITY : 0.064 696 REMARK 3 PLANARITY : 0.008 826 REMARK 3 DIHEDRAL : 12.624 2863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 5 THROUGH 289) REMARK 3 ORIGIN FOR THE GROUP (A): 126.4462 102.2925 37.5792 REMARK 3 T TENSOR REMARK 3 T11: 4.4686 T22: 1.8236 REMARK 3 T33: 5.2161 T12: 0.0714 REMARK 3 T13: 5.2885 T23: 0.2536 REMARK 3 L TENSOR REMARK 3 L11: 1.0463 L22: 1.0340 REMARK 3 L33: 0.0880 L12: 0.2643 REMARK 3 L13: -0.0183 L23: 0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.3421 S12: 0.3634 S13: -0.2926 REMARK 3 S21: 0.3346 S22: -0.4678 S23: 0.6544 REMARK 3 S31: 0.4267 S32: -0.2158 S33: 0.0115 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 5 THROUGH 288) REMARK 3 ORIGIN FOR THE GROUP (A): 139.9655 130.6473 27.6857 REMARK 3 T TENSOR REMARK 3 T11: 3.1535 T22: 2.1863 REMARK 3 T33: 5.9991 T12: 0.2578 REMARK 3 T13: 5.8339 T23: -0.2374 REMARK 3 L TENSOR REMARK 3 L11: 1.1940 L22: 1.2213 REMARK 3 L33: 1.3723 L12: 0.0790 REMARK 3 L13: -0.7393 L23: -0.8461 REMARK 3 S TENSOR REMARK 3 S11: -0.2128 S12: 0.4436 S13: -0.2699 REMARK 3 S21: -0.0777 S22: -1.3093 S23: 0.2471 REMARK 3 S31: 0.8210 S32: -0.5376 S33: -0.2541 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 5 THROUGH 288) REMARK 3 SELECTION : (CHAIN B AND (RESID 5 THROUGH 62 OR RESID REMARK 3 66 THROUGH 111 OR RESID 114 THROUGH 122 REMARK 3 OR RESID 125 THROUGH 288)) REMARK 3 ATOM PAIRS NUMBER : 2599 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2987 REMARK 200 RESOLUTION RANGE HIGH (A) : 5.800 REMARK 200 RESOLUTION RANGE LOW (A) : 68.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.32000 REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 82.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-18% PEG 8000, 100 MM IMIDAZOLE AT REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.28150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.28150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 44 REMARK 465 GLN A 45 REMARK 465 ALA A 63 REMARK 465 ASP A 64 REMARK 465 LYS A 65 REMARK 465 MET A 112 REMARK 465 PHE A 113 REMARK 465 ALA A 123 REMARK 465 VAL A 124 REMARK 465 ALA A 174 REMARK 465 GLN B 44 REMARK 465 GLN B 45 REMARK 465 PHE B 113 REMARK 465 ALA B 174 REMARK 465 ILE B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 206 OD1 ASP A 267 2.03 REMARK 500 O3 NAG C 2 O2 BMA C 3 2.06 REMARK 500 NH1 ARG B 208 O VAL B 266 2.11 REMARK 500 NE ARG B 38 O SER B 90 2.14 REMARK 500 O3 NAG D 2 O2 BMA D 3 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 245 OE1 GLU A 288 4646 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 148 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 CYS B 148 CB - CA - C ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 56 -70.12 -56.02 REMARK 500 ASP A 102 -167.57 -74.56 REMARK 500 GLU A 106 41.06 -103.60 REMARK 500 ARG A 132 78.98 48.40 REMARK 500 GLN A 141 96.83 -60.99 REMARK 500 ARG A 160 132.78 -37.63 REMARK 500 LEU A 165 81.28 49.78 REMARK 500 GLN A 166 -178.13 -54.13 REMARK 500 CYS A 172 62.66 63.96 REMARK 500 GLU A 192 67.93 61.22 REMARK 500 ASN A 243 14.93 52.58 REMARK 500 ASP A 273 -162.77 -78.32 REMARK 500 SER A 278 -167.27 -79.04 REMARK 500 ALA B 63 -159.84 -89.04 REMARK 500 ASP B 64 -72.27 -33.46 REMARK 500 LYS B 65 31.87 -140.32 REMARK 500 GLU B 106 56.75 -95.84 REMARK 500 ILE B 111 126.37 -38.74 REMARK 500 GLN B 141 78.51 42.00 REMARK 500 SER B 158 135.74 -170.18 REMARK 500 ARG B 160 96.95 43.79 REMARK 500 PRO B 161 1.01 -50.26 REMARK 500 LEU B 165 84.36 53.91 REMARK 500 GLN B 166 179.21 -51.61 REMARK 500 GLU B 167 -45.65 -29.58 REMARK 500 CYS B 172 68.01 60.33 REMARK 500 GLU B 192 67.92 63.05 REMARK 500 CYS B 233 65.19 62.85 REMARK 500 ASN B 243 13.69 54.33 REMARK 500 SER B 278 -165.73 -79.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 166 GLU A 167 -144.37 REMARK 500 GLN B 166 GLU B 167 -149.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 47.4 REMARK 620 3 SER A 104 O 100.5 107.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 127 OD1 REMARK 620 2 ASP A 127 OD2 58.0 REMARK 620 3 TYR A 151 O 129.1 73.6 REMARK 620 4 GLY A 154 O 79.1 83.4 80.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 190 OG REMARK 620 2 ARG A 279 O 122.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 23 OD1 REMARK 620 2 ASP B 57 OD2 160.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 126 O REMARK 620 2 ASP B 127 OD1 98.4 REMARK 620 3 GLY B 154 O 121.1 71.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 190 OG REMARK 620 2 ARG B 279 O 138.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 197 OH REMARK 620 2 ASP B 226 OD2 95.1 REMARK 620 3 ASP B 236 OD2 56.2 133.2 REMARK 620 4 ASP B 273 OD2 112.0 128.6 97.8 REMARK 620 N 1 2 3 DBREF 6F39 A 5 289 UNP P00736 C1R_HUMAN 22 306 DBREF 6F39 B 5 289 UNP P00736 C1R_HUMAN 22 306 SEQRES 1 A 285 PRO GLN LYS LEU PHE GLY GLU VAL THR SER PRO LEU PHE SEQRES 2 A 285 PRO LYS PRO TYR PRO ASN ASN PHE GLU THR THR THR VAL SEQRES 3 A 285 ILE THR VAL PRO THR GLY TYR ARG VAL LYS LEU VAL PHE SEQRES 4 A 285 GLN GLN PHE ASP LEU GLU PRO SER GLU GLY CYS PHE TYR SEQRES 5 A 285 ASP TYR VAL LYS ILE SER ALA ASP LYS LYS SER LEU GLY SEQRES 6 A 285 ARG PHE CYS GLY GLN LEU GLY SER PRO LEU GLY ASN PRO SEQRES 7 A 285 PRO GLY LYS LYS GLU PHE MET SER GLN GLY ASN LYS MET SEQRES 8 A 285 LEU LEU THR PHE HIS THR ASP PHE SER ASN GLU GLU ASN SEQRES 9 A 285 GLY THR ILE MET PHE TYR LYS GLY PHE LEU ALA TYR TYR SEQRES 10 A 285 GLN ALA VAL ASP LEU ASP GLU CYS ALA SER ARG SER LYS SEQRES 11 A 285 SER GLY GLU GLU ASP PRO GLN PRO GLN CYS GLN HIS LEU SEQRES 12 A 285 CYS HIS ASN TYR VAL GLY GLY TYR PHE CYS SER CYS ARG SEQRES 13 A 285 PRO GLY TYR GLU LEU GLN GLU ASP THR HIS SER CYS GLN SEQRES 14 A 285 ALA GLU CYS SER SER GLU LEU TYR THR GLU ALA SER GLY SEQRES 15 A 285 TYR ILE SER SER LEU GLU TYR PRO ARG SER TYR PRO PRO SEQRES 16 A 285 ASP LEU ARG CYS ASN TYR SER ILE ARG VAL GLU ARG GLY SEQRES 17 A 285 LEU THR LEU HIS LEU LYS PHE LEU GLU PRO PHE ASP ILE SEQRES 18 A 285 ASP ASP HIS GLN GLN VAL HIS CYS PRO TYR ASP GLN LEU SEQRES 19 A 285 GLN ILE TYR ALA ASN GLY LYS ASN ILE GLY GLU PHE CYS SEQRES 20 A 285 GLY LYS GLN ARG PRO PRO ASP LEU ASP THR SER SER ASN SEQRES 21 A 285 ALA VAL ASP LEU LEU PHE PHE THR ASP GLU SER GLY ASP SEQRES 22 A 285 SER ARG GLY TRP LYS LEU ARG TYR THR THR GLU ILE SEQRES 1 B 285 PRO GLN LYS LEU PHE GLY GLU VAL THR SER PRO LEU PHE SEQRES 2 B 285 PRO LYS PRO TYR PRO ASN ASN PHE GLU THR THR THR VAL SEQRES 3 B 285 ILE THR VAL PRO THR GLY TYR ARG VAL LYS LEU VAL PHE SEQRES 4 B 285 GLN GLN PHE ASP LEU GLU PRO SER GLU GLY CYS PHE TYR SEQRES 5 B 285 ASP TYR VAL LYS ILE SER ALA ASP LYS LYS SER LEU GLY SEQRES 6 B 285 ARG PHE CYS GLY GLN LEU GLY SER PRO LEU GLY ASN PRO SEQRES 7 B 285 PRO GLY LYS LYS GLU PHE MET SER GLN GLY ASN LYS MET SEQRES 8 B 285 LEU LEU THR PHE HIS THR ASP PHE SER ASN GLU GLU ASN SEQRES 9 B 285 GLY THR ILE MET PHE TYR LYS GLY PHE LEU ALA TYR TYR SEQRES 10 B 285 GLN ALA VAL ASP LEU ASP GLU CYS ALA SER ARG SER LYS SEQRES 11 B 285 SER GLY GLU GLU ASP PRO GLN PRO GLN CYS GLN HIS LEU SEQRES 12 B 285 CYS HIS ASN TYR VAL GLY GLY TYR PHE CYS SER CYS ARG SEQRES 13 B 285 PRO GLY TYR GLU LEU GLN GLU ASP THR HIS SER CYS GLN SEQRES 14 B 285 ALA GLU CYS SER SER GLU LEU TYR THR GLU ALA SER GLY SEQRES 15 B 285 TYR ILE SER SER LEU GLU TYR PRO ARG SER TYR PRO PRO SEQRES 16 B 285 ASP LEU ARG CYS ASN TYR SER ILE ARG VAL GLU ARG GLY SEQRES 17 B 285 LEU THR LEU HIS LEU LYS PHE LEU GLU PRO PHE ASP ILE SEQRES 18 B 285 ASP ASP HIS GLN GLN VAL HIS CYS PRO TYR ASP GLN LEU SEQRES 19 B 285 GLN ILE TYR ALA ASN GLY LYS ASN ILE GLY GLU PHE CYS SEQRES 20 B 285 GLY LYS GLN ARG PRO PRO ASP LEU ASP THR SER SER ASN SEQRES 21 B 285 ALA VAL ASP LEU LEU PHE PHE THR ASP GLU SER GLY ASP SEQRES 22 B 285 SER ARG GLY TRP LYS LEU ARG TYR THR THR GLU ILE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET GAL C 5 11 HET MAN C 6 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET GAL D 5 11 HET MAN D 6 11 HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET NA A 304 1 HET NAG A 305 14 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HET NA B 304 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 CA 6(CA 2+) FORMUL 8 NA 2(NA 1+) HELIX 1 AA1 GLU B 106 THR B 110 5 5 SHEET 1 AA1 3 GLY A 10 THR A 13 0 SHEET 2 AA1 3 LEU A 118 TYR A 121 -1 O TYR A 121 N GLY A 10 SHEET 3 AA1 3 LEU A 41 VAL A 42 -1 N VAL A 42 O TYR A 120 SHEET 1 AA2 4 PHE A 25 THR A 32 0 SHEET 2 AA2 4 LYS A 94 THR A 101 -1 O LEU A 97 N THR A 29 SHEET 3 AA2 4 ASP A 57 SER A 62 -1 N SER A 62 O LEU A 96 SHEET 4 AA2 4 GLY A 69 PHE A 71 -1 O PHE A 71 N VAL A 59 SHEET 1 AA3 2 LEU A 147 CYS A 148 0 SHEET 2 AA3 2 CYS A 157 SER A 158 -1 O SER A 158 N LEU A 147 SHEET 1 AA4 5 GLU A 179 TYR A 181 0 SHEET 2 AA4 5 ARG A 202 ARG A 208 1 O ASN A 204 N GLU A 179 SHEET 3 AA4 5 ALA A 265 PHE A 271 -1 O LEU A 268 N TYR A 205 SHEET 4 AA4 5 LEU A 238 ALA A 242 -1 N TYR A 241 O ASP A 267 SHEET 5 AA4 5 LYS A 245 PHE A 250 -1 O LYS A 245 N ALA A 242 SHEET 1 AA5 4 GLY A 186 SER A 189 0 SHEET 2 AA5 4 LYS A 282 GLU A 288 -1 O LEU A 283 N ILE A 188 SHEET 3 AA5 4 THR A 214 LEU A 220 -1 N HIS A 216 O THR A 286 SHEET 4 AA5 4 LEU A 259 ASP A 260 -1 O LEU A 259 N LEU A 217 SHEET 1 AA6 4 PHE B 25 THR B 32 0 SHEET 2 AA6 4 LYS B 94 THR B 101 -1 O MET B 95 N ILE B 31 SHEET 3 AA6 4 ASP B 57 SER B 62 -1 N TYR B 58 O HIS B 100 SHEET 4 AA6 4 SER B 67 PHE B 71 -1 O PHE B 71 N VAL B 59 SHEET 1 AA7 2 LYS B 40 VAL B 42 0 SHEET 2 AA7 2 TYR B 120 GLN B 122 -1 O GLN B 122 N LYS B 40 SHEET 1 AA8 4 GLY B 186 SER B 189 0 SHEET 2 AA8 4 LYS B 282 GLU B 288 -1 O LEU B 283 N ILE B 188 SHEET 3 AA8 4 THR B 214 LEU B 220 -1 N HIS B 216 O THR B 286 SHEET 4 AA8 4 LEU B 259 ASP B 260 -1 O LEU B 259 N LEU B 217 SHEET 1 AA9 4 ARG B 202 TYR B 205 0 SHEET 2 AA9 4 VAL B 266 PHE B 271 -1 O LEU B 268 N TYR B 205 SHEET 3 AA9 4 GLN B 239 ALA B 242 -1 N TYR B 241 O ASP B 267 SHEET 4 AA9 4 LYS B 245 GLU B 249 -1 O LYS B 245 N ALA B 242 SSBOND 1 CYS A 54 CYS A 72 1555 1555 2.04 SSBOND 2 CYS A 129 CYS A 148 1555 1555 2.02 SSBOND 3 CYS A 144 CYS A 157 1555 1555 2.03 SSBOND 4 CYS A 159 CYS A 172 1555 1555 2.01 SSBOND 5 CYS A 176 CYS A 203 1555 1555 2.02 SSBOND 6 CYS A 233 CYS A 251 1555 1555 2.03 SSBOND 7 CYS B 54 CYS B 72 1555 1555 2.04 SSBOND 8 CYS B 129 CYS B 148 1555 1555 2.03 SSBOND 9 CYS B 144 CYS B 157 1555 1555 2.01 SSBOND 10 CYS B 159 CYS B 172 1555 1555 2.01 SSBOND 11 CYS B 176 CYS B 203 1555 1555 2.03 SSBOND 12 CYS B 233 CYS B 251 1555 1555 2.03 LINK ND2 ASN A 108 C1 NAG A 305 1555 1555 1.47 LINK ND2 ASN A 204 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 204 C1 NAG D 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.46 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.45 LINK O4 MAN C 4 C1 GAL C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.47 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.46 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.44 LINK O4 MAN D 4 C1 GAL D 5 1555 1555 1.46 LINK OD1 ASP A 57 CA CA A 301 1555 1555 2.65 LINK OD2 ASP A 57 CA CA A 301 1555 1555 2.81 LINK O SER A 104 CA CA A 301 1555 1555 2.53 LINK OD1 ASP A 127 CA CA A 302 1555 1555 2.24 LINK OD2 ASP A 127 CA CA A 302 1555 1555 2.31 LINK O TYR A 151 CA CA A 302 1555 1555 2.23 LINK O GLY A 154 CA CA A 302 1555 1555 2.15 LINK OG SER A 190 NA NA A 304 1555 1555 2.61 LINK OD2 ASP A 226 CA CA A 303 1555 1555 2.43 LINK O ARG A 279 NA NA A 304 1555 1555 2.51 LINK OD1 ASN B 23 CA CA B 301 1555 1555 2.65 LINK OD2 ASP B 57 CA CA B 301 1555 1555 3.08 LINK O LEU B 126 CA CA B 302 1555 1555 2.54 LINK OD1 ASP B 127 CA CA B 302 1555 1555 2.12 LINK O GLY B 154 CA CA B 302 1555 1555 2.33 LINK OG SER B 190 NA NA B 304 1555 1555 2.26 LINK OH TYR B 197 CA CA B 303 1555 1555 2.18 LINK OD2 ASP B 226 CA CA B 303 1555 1555 2.95 LINK OD2 ASP B 236 CA CA B 303 1555 1555 3.16 LINK OD2 ASP B 273 CA CA B 303 1555 1555 2.21 LINK O ARG B 279 NA NA B 304 1555 1555 2.42 CISPEP 1 PHE A 17 PRO A 18 0 2.85 CISPEP 2 TYR A 193 PRO A 194 0 4.94 CISPEP 3 GLU A 221 PRO A 222 0 -2.08 CISPEP 4 PHE B 17 PRO B 18 0 2.87 CISPEP 5 TYR B 193 PRO B 194 0 6.88 CISPEP 6 GLU B 221 PRO B 222 0 -10.81 CRYST1 140.563 54.620 138.180 90.00 99.90 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007114 0.000000 0.001242 0.00000 SCALE2 0.000000 0.018308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007346 0.00000