HEADER TRANSFERASE 29-NOV-17 6F4D TITLE STRUCTURE OF THE Y21F VARIANT OF QUINOLINATE SYNTHASE IN COMPLEX WITH TITLE 2 PGH COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOLINATE SYNTHASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.72; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: NADA, TM_1644; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT7 KEYWDS NAD BIOSYNTHESIS, IRON SULFUR CLUSTER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS REVDAT 3 17-JAN-24 6F4D 1 REMARK REVDAT 2 30-MAY-18 6F4D 1 JRNL REVDAT 1 25-APR-18 6F4D 0 JRNL AUTH A.VOLBEDA,J.SAEZ CABODEVILLA,C.DARNAULT,O.GIGAREL,T.H.HAN, JRNL AUTH 2 O.RENOUX,O.HAMELIN,S.OLLAGNIER-DE-CHOUDENS,P.AMARA, JRNL AUTH 3 J.C.FONTECILLA-CAMPS JRNL TITL CRYSTALLOGRAPHIC TRAPPING OF REACTION INTERMEDIATES IN JRNL TITL 2 QUINOLINIC ACID SYNTHESIS BY NADA. JRNL REF ACS CHEM. BIOL. V. 13 1209 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29641168 JRNL DOI 10.1021/ACSCHEMBIO.7B01104 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.VOLBEDA,C.DARNAULT,O.RENOUX,D.REICHMANN,P.AMARA, REMARK 1 AUTH 2 S.OLLAGNIER DE CHOUDENS,J.C.FONTECILLA-CAMPS REMARK 1 TITL CRYSTAL STRUCTURES OF QUINOLINATE SYNTHASE IN COMPLEX WITH A REMARK 1 TITL 2 SUBSTRATE ANALOGUE, THE CONDENSATION INTERMEDIATE, AND REMARK 1 TITL 3 SUBSTRATE-DERIVED PRODUCT. REMARK 1 REF J. AM. CHEM. SOC. V. 138 11802 2016 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 27545412 REMARK 1 DOI 10.1021/JACS.6B05884 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.V.CHERRIER,A.CHAN,C.DARNAULT,D.REICHMANN,P.AMARA, REMARK 1 AUTH 2 S.OLLAGNIER DE CHOUDENS,J.C.FONTECILLA-CAMPS REMARK 1 TITL THE CRYSTAL STRUCTURE OF FE4S4 QUINOLINATE SYNTHASE UNRAVELS REMARK 1 TITL 2 AN ENZYMATIC DEHYDRATION MECHANISM THAT USES TYROSINE AND A REMARK 1 TITL 3 HYDROLASE-TYPE TRIAD. REMARK 1 REF J. AM. CHEM. SOC. V. 136 5253 2014 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 24650327 REMARK 1 DOI 10.1021/JA501431B REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 21244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1561 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2416 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : -0.99000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.96000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2530 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2466 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3423 ; 1.531 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5753 ; 1.337 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 5.127 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;34.894 ;24.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;14.701 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.861 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2692 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 80 REMARK 3 RESIDUE RANGE : A 254 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 90.1138 -6.1864 83.1329 REMARK 3 T TENSOR REMARK 3 T11: 0.0046 T22: 0.0504 REMARK 3 T33: 0.0208 T12: -0.0112 REMARK 3 T13: -0.0026 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.0351 L22: 0.4465 REMARK 3 L33: 0.9374 L12: 0.2320 REMARK 3 L13: -0.3063 L23: -0.0158 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: 0.0712 S13: 0.0237 REMARK 3 S21: -0.0353 S22: 0.0720 S23: 0.0009 REMARK 3 S31: 0.0290 S32: -0.1594 S33: -0.0187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 167 REMARK 3 RESIDUE RANGE : A 280 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 109.3409 6.0466 95.4671 REMARK 3 T TENSOR REMARK 3 T11: 0.0091 T22: 0.0195 REMARK 3 T33: 0.0169 T12: 0.0104 REMARK 3 T13: -0.0029 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.8791 L22: 0.4584 REMARK 3 L33: 0.8375 L12: 0.0999 REMARK 3 L13: 0.0082 L23: 0.1540 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: 0.0180 S13: -0.0124 REMARK 3 S21: 0.0018 S22: -0.0172 S23: 0.0128 REMARK 3 S31: -0.0452 S32: -0.0171 S33: 0.0296 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 112.0976 -0.9147 70.3912 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: 0.0193 REMARK 3 T33: 0.0258 T12: -0.0054 REMARK 3 T13: 0.0118 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.3202 L22: 0.6231 REMARK 3 L33: 1.0876 L12: -0.2268 REMARK 3 L13: 0.1681 L23: -0.5306 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0004 S13: 0.0270 REMARK 3 S21: -0.0744 S22: -0.0012 S23: -0.0217 REMARK 3 S31: 0.0506 S32: 0.0514 S33: 0.0005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6F4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 43.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG33500, AMMONIUM SULFATE, REMARK 280 OXALOACETATE, DHAP, NAF, ANAEROBIC, PH 7.1, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.48500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.48500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 585 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 56.56 -142.29 REMARK 500 ALA A 79 102.85 -57.38 REMARK 500 ASP A 101 -38.47 104.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 81 SG REMARK 620 2 SF4 A 301 S1 111.3 REMARK 620 3 SF4 A 301 S2 106.9 106.7 REMARK 620 4 SF4 A 301 S3 121.7 106.0 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 168 SG REMARK 620 2 SF4 A 301 S2 106.4 REMARK 620 3 SF4 A 301 S3 116.9 106.4 REMARK 620 4 SF4 A 301 S4 114.4 105.4 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 254 SG REMARK 620 2 SF4 A 301 S1 116.9 REMARK 620 3 SF4 A 301 S3 115.9 104.6 REMARK 620 4 SF4 A 301 S4 111.4 103.9 102.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PGH A 302 N2 REMARK 620 2 SF4 A 301 S1 156.2 REMARK 620 3 SF4 A 301 S2 97.4 101.8 REMARK 620 4 SF4 A 301 S4 89.5 99.9 102.3 REMARK 620 5 PGH A 302 O2 30.6 167.8 67.7 88.7 REMARK 620 6 HOH A 539 O 77.6 81.5 115.5 141.2 97.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGH A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 DBREF 6F4D A 1 298 UNP Q9X1X7 NADA_THEMA 1 298 SEQADV 6F4D MET A -6 UNP Q9X1X7 INITIATING METHIONINE SEQADV 6F4D HIS A -5 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4D HIS A -4 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4D HIS A -3 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4D HIS A -2 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4D HIS A -1 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4D HIS A 0 UNP Q9X1X7 EXPRESSION TAG SEQADV 6F4D PHE A 21 UNP Q9X1X7 TYR 21 ENGINEERED MUTATION SEQADV 6F4D ARG A 219 UNP Q9X1X7 LYS 219 ENGINEERED MUTATION SEQRES 1 A 305 MET HIS HIS HIS HIS HIS HIS MET VAL ASP GLU ILE LEU SEQRES 2 A 305 LYS LEU LYS LYS GLU LYS GLY TYR ILE ILE LEU ALA HIS SEQRES 3 A 305 ASN PHE GLN ILE PRO GLU LEU GLN ASP ILE ALA ASP PHE SEQRES 4 A 305 VAL GLY ASP SER LEU GLN LEU ALA ARG LYS ALA MET GLU SEQRES 5 A 305 LEU SER GLU LYS LYS ILE LEU PHE LEU GLY VAL ASP PHE SEQRES 6 A 305 MET ALA GLU LEU VAL LYS ILE LEU ASN PRO ASP LYS LYS SEQRES 7 A 305 VAL ILE VAL PRO ASP ARG SER ALA THR CYS PRO MET ALA SEQRES 8 A 305 ASN ARG LEU THR PRO GLU ILE ILE ARG GLU TYR ARG GLU SEQRES 9 A 305 LYS PHE PRO ASP ALA PRO VAL VAL LEU TYR VAL ASN SER SEQRES 10 A 305 THR SER GLU CYS LYS THR LEU ALA ASP VAL ILE CYS THR SEQRES 11 A 305 SER ALA ASN ALA VAL GLU VAL VAL LYS LYS LEU ASP SER SEQRES 12 A 305 SER VAL VAL ILE PHE GLY PRO ASP ARG ASN LEU GLY GLU SEQRES 13 A 305 TYR VAL ALA GLU LYS THR GLY LYS LYS VAL ILE THR ILE SEQRES 14 A 305 PRO GLU ASN GLY HIS CYS PRO VAL HIS GLN PHE ASN ALA SEQRES 15 A 305 GLU SER ILE ASP ALA VAL ARG LYS LYS TYR PRO ASP ALA SEQRES 16 A 305 LYS VAL ILE VAL HIS PRO GLU CYS PRO LYS PRO VAL ARG SEQRES 17 A 305 ASP LYS ALA ASP TYR VAL GLY SER THR GLY GLN MET GLU SEQRES 18 A 305 LYS ILE PRO GLU ARG ASP PRO SER ARG ILE PHE VAL ILE SEQRES 19 A 305 GLY THR GLU ILE GLY MET ILE HIS LYS LEU LYS LYS LYS SEQRES 20 A 305 PHE PRO ASP ARG GLU PHE VAL PRO LEU GLU MET ALA VAL SEQRES 21 A 305 CYS VAL ASN MET LYS LYS ASN THR LEU GLU ASN THR LEU SEQRES 22 A 305 HIS ALA LEU GLN THR GLU SER PHE GLU VAL ILE LEU PRO SEQRES 23 A 305 LYS GLU VAL ILE GLU LYS ALA LYS LYS PRO ILE LEU ARG SEQRES 24 A 305 MET PHE GLU LEU MET GLY HET SF4 A 301 8 HET PGH A 302 10 HET PO4 A 303 5 HET PO4 A 304 5 HET CL A 305 2 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM PGH PHOSPHOGLYCOLOHYDROXAMIC ACID HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 PGH C2 H6 N O6 P FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 CL CL 1- FORMUL 7 HOH *188(H2 O) HELIX 1 AA1 HIS A -4 GLY A 13 1 18 HELIX 2 AA2 ILE A 23 ALA A 30 1 8 HELIX 3 AA3 ASP A 35 LEU A 46 1 12 HELIX 4 AA4 VAL A 56 LEU A 66 1 11 HELIX 5 AA5 CYS A 81 ARG A 86 1 6 HELIX 6 AA6 THR A 88 PHE A 99 1 12 HELIX 7 AA7 THR A 111 LEU A 117 1 7 HELIX 8 AA8 ASN A 126 LEU A 134 1 9 HELIX 9 AA9 ASP A 144 GLY A 156 1 13 HELIX 10 AB1 CYS A 168 GLN A 172 5 5 HELIX 11 AB2 ASN A 174 TYR A 185 1 12 HELIX 12 AB3 PRO A 197 LYS A 203 1 7 HELIX 13 AB4 SER A 209 ILE A 216 1 8 HELIX 14 AB5 PRO A 217 ARG A 219 5 3 HELIX 15 AB6 ILE A 231 PHE A 241 1 11 HELIX 16 AB7 ASN A 256 ASN A 260 5 5 HELIX 17 AB8 THR A 261 GLU A 272 1 12 HELIX 18 AB9 PRO A 279 LEU A 296 1 18 SHEET 1 AA1 4 PHE A 32 GLY A 34 0 SHEET 2 AA1 4 TYR A 14 HIS A 19 1 N ALA A 18 O PHE A 32 SHEET 3 AA1 4 LYS A 50 LEU A 54 1 O LEU A 52 N ILE A 15 SHEET 4 AA1 4 LYS A 71 ILE A 73 1 O LYS A 71 N ILE A 51 SHEET 1 AA2 4 VAL A 120 CYS A 122 0 SHEET 2 AA2 4 VAL A 104 TYR A 107 1 N LEU A 106 O VAL A 120 SHEET 3 AA2 4 VAL A 138 GLY A 142 1 O GLY A 142 N TYR A 107 SHEET 4 AA2 4 LYS A 158 THR A 161 1 O ILE A 160 N VAL A 139 SHEET 1 AA3 4 TYR A 206 VAL A 207 0 SHEET 2 AA3 4 LYS A 189 VAL A 192 1 N VAL A 192 O TYR A 206 SHEET 3 AA3 4 ILE A 224 GLY A 228 1 O VAL A 226 N ILE A 191 SHEET 4 AA3 4 GLU A 245 PRO A 248 1 O VAL A 247 N PHE A 225 LINK SG CYS A 81 FE4 SF4 A 301 1555 1555 2.30 LINK SG CYS A 168 FE1 SF4 A 301 1555 1555 2.23 LINK SG CYS A 254 FE2 SF4 A 301 1555 1555 2.36 LINK FE3 SF4 A 301 N2 APGH A 302 1555 1555 2.65 LINK FE3 SF4 A 301 O2 APGH A 302 1555 1555 2.00 LINK FE3 SF4 A 301 O BHOH A 539 1555 1555 2.35 CISPEP 1 GLY A 142 PRO A 143 0 -3.54 CISPEP 2 ILE A 162 PRO A 163 0 -5.06 CISPEP 3 SER A 273 PHE A 274 0 -2.34 SITE 1 AC1 8 PHE A 21 CYS A 81 ASN A 109 CYS A 168 SITE 2 AC1 8 GLU A 195 CYS A 254 PGH A 302 HOH A 539 SITE 1 AC2 17 HIS A 19 PHE A 21 ASP A 35 SER A 36 SITE 2 AC2 17 ASN A 109 SER A 124 HIS A 171 HIS A 193 SITE 3 AC2 17 GLU A 195 SER A 209 THR A 210 SF4 A 301 SITE 4 AC2 17 PO4 A 303 HOH A 409 HOH A 413 HOH A 446 SITE 5 AC2 17 HOH A 539 SITE 1 AC3 10 HIS A 19 ASP A 35 SER A 36 SER A 124 SITE 2 AC3 10 HIS A 193 SER A 209 THR A 210 PGH A 302 SITE 3 AC3 10 HOH A 413 HOH A 446 SITE 1 AC4 4 GLN A 38 ARG A 41 LYS A 215 HOH A 482 SITE 1 AC5 2 ARG A 219 LYS A 238 CRYST1 102.970 49.170 69.390 90.00 107.79 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009712 0.000000 0.003116 0.00000 SCALE2 0.000000 0.020338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015135 0.00000