HEADER PEPTIDE BINDING PROTEIN 30-NOV-17 6F55 TITLE COMPLEX STRUCTURE OF PACSIN SH3 DOMAIN AND TRPV4 PROLINE RICH REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PACSIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PRR; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V COMPND 10 MEMBER 4; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: PACSIN3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PROTEIN, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.A.GLOGOWSKI,B.GORETZKI,E.DIEHL,E.DUCHARDT-FERNER,C.HACKER, AUTHOR 2 U.A.HELLMICH REVDAT 4 15-MAY-24 6F55 1 REMARK REVDAT 3 08-MAY-19 6F55 1 REMARK REVDAT 2 19-DEC-18 6F55 1 JRNL REVDAT 1 03-OCT-18 6F55 0 JRNL AUTH B.GORETZKI,N.A.GLOGOWSKI,E.DIEHL,E.DUCHARDT-FERNER,C.HACKER, JRNL AUTH 2 R.GAUDET,U.A.HELLMICH JRNL TITL STRUCTURAL BASIS OF TRPV4 N TERMINUS INTERACTION WITH JRNL TITL 2 SYNDAPIN/PACSIN1-3 AND PIP2. JRNL REF STRUCTURE V. 26 1583 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 30244966 JRNL DOI 10.1016/J.STR.2018.08.002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUENTERT (CYANA), LUGINBUHL, GUNTERT, BILLETER AND REMARK 3 WUTHRICH (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200007321. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 250 UM [U-13C; U-15N] GGPACSH3, REMARK 210 1.25 MM UNLABELED PRR, 90% H2O/ REMARK 210 10% D2O; 250 UM [U-13C; U-15N] REMARK 210 GGPACSH3, 90% H2O/10% D2O; 576 REMARK 210 UM [U-13C; U-15N] GGPACSH3, 2.88 REMARK 210 MM UNLABELED PRR, 90% H2O/10% REMARK 210 D2O; 256.8 UM UNLABELED GGPACSH3, REMARK 210 1.284 MM SELECTIVELY 13C P124 REMARK 210 AND 15N A125 PRR, 90% H2O/10% REMARK 210 D2O; 256.8 UM [U-13C; U-15N] REMARK 210 GGPACSH3, 1.284 MM SELECTIVELY REMARK 210 13C P128 PRR, 90% H2O/10% D2O; REMARK 210 235 UM UNLABELED GGPACSH3, 1.175 REMARK 210 MM SELECTIVELY 13C P126 PRR, 90% REMARK 210 H2O/10% D2O; 235 UM UNLABELED REMARK 210 GGPACSH3, 1.175 MM SELECTIVELY REMARK 210 13C K122 P130 PRR, 90% H2O/10% REMARK 210 D2O; 229 UM UNLABELED GGPACSH3, REMARK 210 1.145 MM SELECTIVELY 13C P129 REMARK 210 K133 PRR, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HN(CA)CO; 3D HNCA; REMARK 210 3D HN(CO)CA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 2D 1H- REMARK 210 15N HSQC; 3D 1H-15N NOESY-HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 13C FILTERED AND REMARK 210 13C EDITED NOESY-HSQC; 3D 13C REMARK 210 FILTERED AND 13C EDITED NOESY- REMARK 210 HSQC AROMATIC; 3D 13C FILTERED REMARK 210 AND 13C EDITED NOESY-HSQC REMARK 210 ALIPHATIC; 3D 13C FILTERED NOESY; REMARK 210 2D 13C FILTERED TOCSY; 2D 1H- REMARK 210 13C NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 950 MHZ; 800 MHZ; 600 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 3.9, CCPNMR ANALYSIS, REMARK 210 TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 10 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 62 44.88 -143.11 REMARK 500 1 ALA B 105 168.34 -48.83 REMARK 500 1 ASN B 107 153.77 -49.36 REMARK 500 1 ILE B 111 -142.24 -139.64 REMARK 500 1 LEU B 112 74.68 38.36 REMARK 500 1 LYS B 113 -70.71 -155.35 REMARK 500 2 VAL A 62 -67.53 -141.96 REMARK 500 2 LYS B 102 9.58 -150.77 REMARK 500 2 PRO B 110 -72.49 -73.79 REMARK 500 3 LYS A 2 71.48 27.88 REMARK 500 3 ALA A 19 -1.81 -58.05 REMARK 500 3 ASN B 107 159.78 -48.61 REMARK 500 3 PRO B 110 -77.42 -72.05 REMARK 500 3 ILE B 111 -62.95 -99.01 REMARK 500 3 LEU B 112 73.84 31.99 REMARK 500 4 VAL A 3 67.72 34.94 REMARK 500 4 ALA A 66 79.77 7.15 REMARK 500 4 ALA B 105 160.44 -41.79 REMARK 500 4 ASN B 107 166.14 -45.05 REMARK 500 5 LYS A 2 3.03 -59.71 REMARK 500 5 VAL A 62 25.99 -142.86 REMARK 500 5 ALA A 66 -86.75 -135.05 REMARK 500 5 PRO B 110 -159.89 -82.91 REMARK 500 5 LEU B 112 83.01 61.60 REMARK 500 5 VAL B 114 -64.04 -126.15 REMARK 500 6 LYS A 2 -70.75 -139.76 REMARK 500 6 LYS B 102 -15.30 99.72 REMARK 500 6 LEU B 112 -52.61 -126.42 REMARK 500 7 PRO B 110 -76.53 -74.11 REMARK 500 8 PRO B 110 -154.57 -82.56 REMARK 500 8 LEU B 112 -178.11 170.64 REMARK 500 8 LYS B 113 -166.42 -171.13 REMARK 500 9 LYS A 2 54.24 -140.98 REMARK 500 9 ALA A 66 73.12 56.08 REMARK 500 10 LYS A 2 -179.63 66.80 REMARK 500 10 ALA A 66 -81.27 -152.80 REMARK 500 10 PRO B 104 99.77 -68.20 REMARK 500 10 ASN B 107 151.21 -42.37 REMARK 500 10 PRO B 110 -78.09 -68.89 REMARK 500 10 LEU B 112 140.66 65.41 REMARK 500 10 LYS B 113 53.15 35.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 12 0.09 SIDE CHAIN REMARK 500 3 TYR A 12 0.08 SIDE CHAIN REMARK 500 4 TYR A 58 0.08 SIDE CHAIN REMARK 500 7 TYR A 12 0.09 SIDE CHAIN REMARK 500 7 TYR A 14 0.08 SIDE CHAIN REMARK 500 9 TYR A 12 0.14 SIDE CHAIN REMARK 500 9 TYR A 14 0.08 SIDE CHAIN REMARK 500 10 TYR A 12 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34211 RELATED DB: BMRB REMARK 900 COMPLEX STRUCTURE OF PACSIN SH3 DOMAIN AND TRPV4 PROLINE RICH REGION DBREF 6F55 A 2 64 UNP Q1G1I6 Q1G1I6_CHICK 375 437 DBREF 6F55 B 101 115 PDB 6F55 6F55 101 115 SEQADV 6F55 MET A 1 UNP Q1G1I6 INITIATING METHIONINE SEQADV 6F55 ALA A 65 UNP Q1G1I6 EXPRESSION TAG SEQADV 6F55 ALA A 66 UNP Q1G1I6 EXPRESSION TAG SEQADV 6F55 ALA A 67 UNP Q1G1I6 EXPRESSION TAG SEQRES 1 A 67 MET LYS VAL PRO GLY VAL ARG VAL ARG ALA LEU TYR ASP SEQRES 2 A 67 TYR THR GLY GLN GLU ALA ASP GLU LEU SER PHE LYS ALA SEQRES 3 A 67 GLY GLU GLU LEU MET LYS ILE SER GLU GLU ASP GLU GLN SEQRES 4 A 67 GLY TRP CYS LYS GLY ARG LEU LEU THR GLY HIS VAL GLY SEQRES 5 A 67 LEU TYR PRO ALA ASN TYR VAL GLU LYS VAL GLY LEU ALA SEQRES 6 A 67 ALA ALA SEQRES 1 B 15 THR LYS GLY PRO ALA PRO ASN PRO PRO PRO ILE LEU LYS SEQRES 2 B 15 VAL TRP SHEET 1 AA1 5 VAL A 51 PRO A 55 0 SHEET 2 AA1 5 TRP A 41 LEU A 46 -1 N CYS A 42 O TYR A 54 SHEET 3 AA1 5 GLU A 29 GLU A 36 -1 N MET A 31 O ARG A 45 SHEET 4 AA1 5 VAL A 6 ALA A 10 -1 N VAL A 8 O LEU A 30 SHEET 5 AA1 5 VAL A 59 LYS A 61 -1 O GLU A 60 N ARG A 9 CISPEP 1 ASN B 107 PRO B 108 1 -0.58 CISPEP 2 ASN B 107 PRO B 108 2 -0.57 CISPEP 3 ASN B 107 PRO B 108 3 1.38 CISPEP 4 ASN B 107 PRO B 108 4 0.96 CISPEP 5 ASN B 107 PRO B 108 5 -0.81 CISPEP 6 ASN B 107 PRO B 108 6 0.08 CISPEP 7 ASN B 107 PRO B 108 7 0.85 CISPEP 8 ASN B 107 PRO B 108 8 -1.11 CISPEP 9 ASN B 107 PRO B 108 9 -0.50 CISPEP 10 ASN B 107 PRO B 108 10 0.86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1