HEADER DNA BINDING PROTEIN 01-DEC-17 6F5B TITLE STRUCTURE OF ARTD2/PARP2 WGR DOMAIN BOUND TO DOUBLE STRANDED DNA WITH TITLE 2 5'PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HPARP-2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 2, COMPND 5 ARTD2,NAD(+) ADP-RIBOSYLTRANSFERASE 2,ADPRT-2,POLY[ADP-RIBOSE] COMPND 6 SYNTHASE 2,PADPRT-2; COMPND 7 EC: 2.4.2.30; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(P*GP*CP*CP*TP*AP*TP*AP*GP*GP*C)-3'); COMPND 11 CHAIN: C, D, E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP2, ADPRT2, ADPRTL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS ADP-RIBOSYLATION, DNA REPAIR, DNA END JOINING, ARTD2, PHOSPHORYLATED KEYWDS 2 DNA, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.OBAJI,T.HAIKARAINEN,L.LEHTIO REVDAT 4 16-OCT-19 6F5B 1 REMARK REVDAT 3 26-DEC-18 6F5B 1 JRNL REVDAT 2 24-OCT-18 6F5B 1 JRNL REVDAT 1 10-OCT-18 6F5B 0 JRNL AUTH E.OBAJI,T.HAIKARAINEN,L.LEHTIO JRNL TITL STRUCTURAL BASIS FOR DNA BREAK RECOGNITION BY ARTD2/PARP2. JRNL REF NUCLEIC ACIDS RES. V. 46 12154 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30321391 JRNL DOI 10.1093/NAR/GKY927 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 904 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.4280 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1849 REMARK 3 NUCLEIC ACID ATOMS : 824 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.65000 REMARK 3 B22 (A**2) : -1.22000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.728 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.362 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.400 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2809 ; 0.010 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 2146 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3958 ; 1.600 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5031 ; 1.201 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 7.760 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;34.643 ;25.842 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;19.227 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;24.767 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2589 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 585 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 906 ; 6.493 ; 8.291 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 905 ; 6.494 ; 8.289 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1129 ; 9.822 ;12.429 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1130 ; 9.818 ;12.433 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 7.343 ; 8.789 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1902 ; 7.341 ; 8.789 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2829 ;10.974 ;13.101 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3354 ;13.730 ;87.844 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3355 ;13.728 ;87.837 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 92 203 B 92 203 6744 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6F5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13124 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.770 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.79700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PARP2 HOMOLOGY MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 % V/V POLYPROPYLENE GLYCOL 400 0.1 REMARK 280 M NA-ACETATE 3 % 2 PROPANOL, PH 4.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.58000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.58000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 88 REMARK 465 MET A 89 REMARK 465 GLY A 90 REMARK 465 LYS A 91 REMARK 465 MET A 206 REMARK 465 ASP A 207 REMARK 465 TYR A 208 REMARK 465 ALA A 209 REMARK 465 THR A 210 REMARK 465 ASN A 211 REMARK 465 THR A 212 REMARK 465 GLN A 213 REMARK 465 ASP A 214 REMARK 465 GLU A 215 REMARK 465 GLU A 216 REMARK 465 GLU A 217 REMARK 465 THR A 218 REMARK 465 SER B 88 REMARK 465 MET B 89 REMARK 465 GLY B 90 REMARK 465 LYS B 91 REMARK 465 GLN B 205 REMARK 465 MET B 206 REMARK 465 ASP B 207 REMARK 465 TYR B 208 REMARK 465 ALA B 209 REMARK 465 THR B 210 REMARK 465 ASN B 211 REMARK 465 THR B 212 REMARK 465 GLN B 213 REMARK 465 ASP B 214 REMARK 465 GLU B 215 REMARK 465 GLU B 216 REMARK 465 GLU B 217 REMARK 465 THR B 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 191 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 1 P DG C 1 OP3 -0.126 REMARK 500 DG D 1 P DG D 1 OP3 -0.122 REMARK 500 DG E 1 P DG E 1 OP3 -0.120 REMARK 500 DG F 1 P DG F 1 OP3 -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 150 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 DC C 3 O5' - P - OP2 ANGL. DEV. = -6.3 DEGREES REMARK 500 DT C 4 O5' - P - OP2 ANGL. DEV. = -8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 110 86.54 -152.31 REMARK 500 ASN A 129 87.73 -154.06 REMARK 500 SER A 166 -135.64 55.33 REMARK 500 ARG A 191 45.37 -157.54 REMARK 500 LYS B 101 -3.69 -140.59 REMARK 500 ASN B 123 91.50 -168.26 REMARK 500 ASN B 129 86.86 -153.32 REMARK 500 ASP B 190 20.09 -75.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 191 GLU A 192 144.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 6F5B A 90 218 UNP Q9UGN5 PARP2_HUMAN 90 218 DBREF 6F5B B 90 218 UNP Q9UGN5 PARP2_HUMAN 90 218 DBREF 6F5B C 1 10 PDB 6F5B 6F5B 1 10 DBREF 6F5B D 1 10 PDB 6F5B 6F5B 1 10 DBREF 6F5B E 1 10 PDB 6F5B 6F5B 1 10 DBREF 6F5B F 1 10 PDB 6F5B 6F5B 1 10 SEQADV 6F5B SER A 88 UNP Q9UGN5 EXPRESSION TAG SEQADV 6F5B MET A 89 UNP Q9UGN5 EXPRESSION TAG SEQADV 6F5B SER B 88 UNP Q9UGN5 EXPRESSION TAG SEQADV 6F5B MET B 89 UNP Q9UGN5 EXPRESSION TAG SEQRES 1 A 131 SER MET GLY LYS ALA PRO VAL ASP PRO GLU CYS THR ALA SEQRES 2 A 131 LYS VAL GLY LYS ALA HIS VAL TYR CYS GLU GLY ASN ASP SEQRES 3 A 131 VAL TYR ASP VAL MET LEU ASN GLN THR ASN LEU GLN PHE SEQRES 4 A 131 ASN ASN ASN LYS TYR TYR LEU ILE GLN LEU LEU GLU ASP SEQRES 5 A 131 ASP ALA GLN ARG ASN PHE SER VAL TRP MET ARG TRP GLY SEQRES 6 A 131 ARG VAL GLY LYS MET GLY GLN HIS SER LEU VAL ALA CYS SEQRES 7 A 131 SER GLY ASN LEU ASN LYS ALA LYS GLU ILE PHE GLN LYS SEQRES 8 A 131 LYS PHE LEU ASP LYS THR LYS ASN ASN TRP GLU ASP ARG SEQRES 9 A 131 GLU LYS PHE GLU LYS VAL PRO GLY LYS TYR ASP MET LEU SEQRES 10 A 131 GLN MET ASP TYR ALA THR ASN THR GLN ASP GLU GLU GLU SEQRES 11 A 131 THR SEQRES 1 B 131 SER MET GLY LYS ALA PRO VAL ASP PRO GLU CYS THR ALA SEQRES 2 B 131 LYS VAL GLY LYS ALA HIS VAL TYR CYS GLU GLY ASN ASP SEQRES 3 B 131 VAL TYR ASP VAL MET LEU ASN GLN THR ASN LEU GLN PHE SEQRES 4 B 131 ASN ASN ASN LYS TYR TYR LEU ILE GLN LEU LEU GLU ASP SEQRES 5 B 131 ASP ALA GLN ARG ASN PHE SER VAL TRP MET ARG TRP GLY SEQRES 6 B 131 ARG VAL GLY LYS MET GLY GLN HIS SER LEU VAL ALA CYS SEQRES 7 B 131 SER GLY ASN LEU ASN LYS ALA LYS GLU ILE PHE GLN LYS SEQRES 8 B 131 LYS PHE LEU ASP LYS THR LYS ASN ASN TRP GLU ASP ARG SEQRES 9 B 131 GLU LYS PHE GLU LYS VAL PRO GLY LYS TYR ASP MET LEU SEQRES 10 B 131 GLN MET ASP TYR ALA THR ASN THR GLN ASP GLU GLU GLU SEQRES 11 B 131 THR SEQRES 1 C 10 DG DC DC DT DA DT DA DG DG DC SEQRES 1 D 10 DG DC DC DT DA DT DA DG DG DC SEQRES 1 E 10 DG DC DC DT DA DT DA DG DG DC SEQRES 1 F 10 DG DC DC DT DA DT DA DG DG DC HELIX 1 AA1 ASN A 168 LYS A 185 1 18 HELIX 2 AA2 ASN B 168 LYS B 185 1 18 SHEET 1 AA1 3 ALA A 105 VAL A 107 0 SHEET 2 AA1 3 ASN A 128 ASP A 139 -1 O GLU A 138 N HIS A 106 SHEET 3 AA1 3 ASP A 116 ASN A 123 -1 N ASN A 123 O ASN A 128 SHEET 1 AA2 4 ALA A 105 VAL A 107 0 SHEET 2 AA2 4 ASN A 128 ASP A 139 -1 O GLU A 138 N HIS A 106 SHEET 3 AA2 4 PHE A 145 ARG A 153 -1 O ARG A 150 N LEU A 133 SHEET 4 AA2 4 GLN A 159 SER A 166 -1 O SER A 166 N PHE A 145 SHEET 1 AA3 2 CYS A 109 GLU A 110 0 SHEET 2 AA3 2 ASP A 113 VAL A 114 -1 O ASP A 113 N GLU A 110 SHEET 1 AA4 3 ALA B 105 VAL B 107 0 SHEET 2 AA4 3 ASN B 128 ASP B 139 -1 O GLU B 138 N HIS B 106 SHEET 3 AA4 3 ASP B 116 ASN B 123 -1 N ASN B 123 O ASN B 128 SHEET 1 AA5 4 ALA B 105 VAL B 107 0 SHEET 2 AA5 4 ASN B 128 ASP B 139 -1 O GLU B 138 N HIS B 106 SHEET 3 AA5 4 PHE B 145 ARG B 153 -1 O ARG B 150 N LEU B 133 SHEET 4 AA5 4 GLN B 159 ALA B 164 -1 O VAL B 163 N VAL B 147 SHEET 1 AA6 2 CYS B 109 GLU B 110 0 SHEET 2 AA6 2 ASP B 113 VAL B 114 -1 O ASP B 113 N GLU B 110 CRYST1 63.160 84.360 95.960 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010421 0.00000