data_6F62 # _entry.id 6F62 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.325 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6F62 WWPDB D_1200007797 # _pdbx_database_related.db_name PDB _pdbx_database_related.details '6F5X shows the same head-to-head assembly in a closed conformation' _pdbx_database_related.db_id 6F5X _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6F62 _pdbx_database_status.recvd_initial_deposition_date 2017-12-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dunce, J.M.' 1 ? 'Davies, O.R.' 2 0000-0002-3806-5403 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 557 _citation.page_last 569 _citation.title 'Structural basis of meiotic chromosome synapsis through SYCP1 self-assembly.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-018-0078-9 _citation.pdbx_database_id_PubMed 29915389 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dunce, J.M.' 1 ? primary 'Dunne, O.M.' 2 ? primary 'Ratcliff, M.' 3 ? primary 'Millan, C.' 4 ? primary 'Madgwick, S.' 5 ? primary 'Uson, I.' 6 ? primary 'Davies, O.R.' 7 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 106.66 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6F62 _cell.details ? _cell.formula_units_Z ? _cell.length_a 65.670 _cell.length_a_esd ? _cell.length_b 37.310 _cell.length_b_esd ? _cell.length_c 108.520 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6F62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Synaptonemal complex protein 1' 12887.740 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 4 water nat water 18.015 104 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SCP-1,Cancer/testis antigen 8,CT8' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSMGLSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENN ATRHLCNLLKETCARSAEKTKKYEYEREE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSMGLSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENN ATRHLCNLLKETCARSAEKTKKYEYEREE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 GLY n 1 5 LEU n 1 6 SER n 1 7 ARG n 1 8 VAL n 1 9 TYR n 1 10 SER n 1 11 LYS n 1 12 LEU n 1 13 TYR n 1 14 LYS n 1 15 GLU n 1 16 ALA n 1 17 GLU n 1 18 LYS n 1 19 ILE n 1 20 LYS n 1 21 LYS n 1 22 TRP n 1 23 LYS n 1 24 VAL n 1 25 SER n 1 26 THR n 1 27 GLU n 1 28 ALA n 1 29 GLU n 1 30 LEU n 1 31 ARG n 1 32 GLN n 1 33 LYS n 1 34 GLU n 1 35 SER n 1 36 LYS n 1 37 LEU n 1 38 GLN n 1 39 GLU n 1 40 ASN n 1 41 ARG n 1 42 LYS n 1 43 ILE n 1 44 ILE n 1 45 GLU n 1 46 ALA n 1 47 GLN n 1 48 ARG n 1 49 LYS n 1 50 ALA n 1 51 ILE n 1 52 GLN n 1 53 GLU n 1 54 LEU n 1 55 GLN n 1 56 PHE n 1 57 GLY n 1 58 ASN n 1 59 GLU n 1 60 LYS n 1 61 VAL n 1 62 SER n 1 63 LEU n 1 64 LYS n 1 65 LEU n 1 66 GLU n 1 67 GLU n 1 68 GLY n 1 69 ILE n 1 70 GLN n 1 71 GLU n 1 72 ASN n 1 73 LYS n 1 74 ASP n 1 75 LEU n 1 76 ILE n 1 77 LYS n 1 78 GLU n 1 79 ASN n 1 80 ASN n 1 81 ALA n 1 82 THR n 1 83 ARG n 1 84 HIS n 1 85 LEU n 1 86 CYS n 1 87 ASN n 1 88 LEU n 1 89 LEU n 1 90 LYS n 1 91 GLU n 1 92 THR n 1 93 CYS n 1 94 ALA n 1 95 ARG n 1 96 SER n 1 97 ALA n 1 98 GLU n 1 99 LYS n 1 100 THR n 1 101 LYS n 1 102 LYS n 1 103 TYR n 1 104 GLU n 1 105 TYR n 1 106 GLU n 1 107 ARG n 1 108 GLU n 1 109 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 109 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SYCP1, SCP1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYCP1_HUMAN _struct_ref.pdbx_db_accession Q15431 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKIIEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATR HLCNLLKETCARSAEKTKKYEYEREE ; _struct_ref.pdbx_align_begin 101 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6F62 A 4 ? 109 ? Q15431 101 ? 206 ? 101 206 2 1 6F62 B 4 ? 109 ? Q15431 101 ? 206 ? 101 206 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6F62 GLY A 1 ? UNP Q15431 ? ? 'expression tag' 98 1 1 6F62 SER A 2 ? UNP Q15431 ? ? 'expression tag' 99 2 1 6F62 MET A 3 ? UNP Q15431 ? ? 'expression tag' 100 3 2 6F62 GLY B 1 ? UNP Q15431 ? ? 'expression tag' 98 4 2 6F62 SER B 2 ? UNP Q15431 ? ? 'expression tag' 99 5 2 6F62 MET B 3 ? UNP Q15431 ? ? 'expression tag' 100 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6F62 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM MES pH 6.0, 40% (v/v) MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-05-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9282 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9282 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 30.44 _reflns.entry_id 6F62 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.06 _reflns.d_resolution_low 34.87 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15862 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.0 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.075 _reflns.pdbx_Rpim_I_all 0.023 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.06 _reflns_shell.d_res_low 2.12 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1217 _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.919 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 11.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.963 _reflns_shell.pdbx_Rpim_I_all 0.286 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.969 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'Refined against data corrected for anisotropy (FP_ISOB/SIGFP_ISOB) using the UCLA diffraction anisotropy server.' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6F62 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.066 _refine.ls_d_res_low 27.234 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12467 _refine.ls_number_reflns_R_free 664 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 79.18 _refine.ls_percent_reflns_R_free 5.33 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2274 _refine.ls_R_factor_R_free 0.2441 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2264 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.40 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.70 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.03 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.28 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1739 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 1861 _refine_hist.d_res_high 2.066 _refine_hist.d_res_low 27.234 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 ? 1773 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.334 ? 2356 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 21.524 ? 732 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.024 ? 255 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.001 ? 297 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0655 2.2249 . . 56 844 29.00 . . . 0.3275 . 0.2878 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2249 2.4487 . . 115 2043 69.00 . . . 0.3011 . 0.2614 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4487 2.8027 . . 170 2876 97.00 . . . 0.2557 . 0.2586 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8027 3.5299 . . 162 2978 100.00 . . . 0.2693 . 0.2360 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5299 27.2360 . . 161 3062 99.00 . . . 0.2082 . 0.2000 . . . . . . . . . . # _struct.entry_id 6F62 _struct.title 'Crystal structure of the SYCP1 N-terminal head-to-head assembly in open conformation' _struct.pdbx_descriptor 'Synaptonemal complex protein 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6F62 _struct_keywords.text 'Meiosis, Chromosome structure, Coiled-coil, Self-assembly, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 4 ? GLU A 108 ? GLY A 101 GLU A 205 1 ? 105 HELX_P HELX_P2 AA2 LEU B 5 ? ARG B 107 ? LEU B 102 ARG B 204 1 ? 103 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 302 ? 3 'binding site for residue CL A 302' AC2 Software A MPD 303 ? 2 'binding site for residue MPD A 303' AC3 Software B MPD 301 ? 5 'binding site for residue MPD B 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 84 ? HIS A 181 . ? 1_555 ? 2 AC1 3 ASN A 87 ? ASN A 184 . ? 1_555 ? 3 AC1 3 HOH G . ? HOH A 449 . ? 1_555 ? 4 AC2 2 TYR A 9 ? TYR A 106 . ? 2_357 ? 5 AC2 2 ILE A 19 ? ILE A 116 . ? 1_555 ? 6 AC3 5 SER A 6 ? SER A 103 . ? 2_357 ? 7 AC3 5 TYR A 9 ? TYR A 106 . ? 2_357 ? 8 AC3 5 SER A 10 ? SER A 107 . ? 2_357 ? 9 AC3 5 TYR B 9 ? TYR B 106 . ? 1_555 ? 10 AC3 5 LEU B 12 ? LEU B 109 . ? 1_555 ? # _atom_sites.entry_id 6F62 _atom_sites.fract_transf_matrix[1][1] 0.015228 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004557 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026802 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009619 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 98 ? ? ? A . n A 1 2 SER 2 99 ? ? ? A . n A 1 3 MET 3 100 ? ? ? A . n A 1 4 GLY 4 101 101 GLY GLY A . n A 1 5 LEU 5 102 102 LEU LEU A . n A 1 6 SER 6 103 103 SER SER A . n A 1 7 ARG 7 104 104 ARG ARG A . n A 1 8 VAL 8 105 105 VAL VAL A . n A 1 9 TYR 9 106 106 TYR TYR A . n A 1 10 SER 10 107 107 SER SER A . n A 1 11 LYS 11 108 108 LYS LYS A . n A 1 12 LEU 12 109 109 LEU LEU A . n A 1 13 TYR 13 110 110 TYR TYR A . n A 1 14 LYS 14 111 111 LYS LYS A . n A 1 15 GLU 15 112 112 GLU GLU A . n A 1 16 ALA 16 113 113 ALA ALA A . n A 1 17 GLU 17 114 114 GLU GLU A . n A 1 18 LYS 18 115 115 LYS LYS A . n A 1 19 ILE 19 116 116 ILE ILE A . n A 1 20 LYS 20 117 117 LYS LYS A . n A 1 21 LYS 21 118 118 LYS LYS A . n A 1 22 TRP 22 119 119 TRP TRP A . n A 1 23 LYS 23 120 120 LYS LYS A . n A 1 24 VAL 24 121 121 VAL VAL A . n A 1 25 SER 25 122 122 SER SER A . n A 1 26 THR 26 123 123 THR THR A . n A 1 27 GLU 27 124 124 GLU GLU A . n A 1 28 ALA 28 125 125 ALA ALA A . n A 1 29 GLU 29 126 126 GLU GLU A . n A 1 30 LEU 30 127 127 LEU LEU A . n A 1 31 ARG 31 128 128 ARG ARG A . n A 1 32 GLN 32 129 129 GLN GLN A . n A 1 33 LYS 33 130 130 LYS LYS A . n A 1 34 GLU 34 131 131 GLU GLU A . n A 1 35 SER 35 132 132 SER SER A . n A 1 36 LYS 36 133 133 LYS LYS A . n A 1 37 LEU 37 134 134 LEU LEU A . n A 1 38 GLN 38 135 135 GLN GLN A . n A 1 39 GLU 39 136 136 GLU GLU A . n A 1 40 ASN 40 137 137 ASN ASN A . n A 1 41 ARG 41 138 138 ARG ARG A . n A 1 42 LYS 42 139 139 LYS LYS A . n A 1 43 ILE 43 140 140 ILE ILE A . n A 1 44 ILE 44 141 141 ILE ILE A . n A 1 45 GLU 45 142 142 GLU GLU A . n A 1 46 ALA 46 143 143 ALA ALA A . n A 1 47 GLN 47 144 144 GLN GLN A . n A 1 48 ARG 48 145 145 ARG ARG A . n A 1 49 LYS 49 146 146 LYS LYS A . n A 1 50 ALA 50 147 147 ALA ALA A . n A 1 51 ILE 51 148 148 ILE ILE A . n A 1 52 GLN 52 149 149 GLN GLN A . n A 1 53 GLU 53 150 150 GLU GLU A . n A 1 54 LEU 54 151 151 LEU LEU A . n A 1 55 GLN 55 152 152 GLN GLN A . n A 1 56 PHE 56 153 153 PHE PHE A . n A 1 57 GLY 57 154 154 GLY GLY A . n A 1 58 ASN 58 155 155 ASN ASN A . n A 1 59 GLU 59 156 156 GLU GLU A . n A 1 60 LYS 60 157 157 LYS LYS A . n A 1 61 VAL 61 158 158 VAL VAL A . n A 1 62 SER 62 159 159 SER SER A . n A 1 63 LEU 63 160 160 LEU LEU A . n A 1 64 LYS 64 161 161 LYS LYS A . n A 1 65 LEU 65 162 162 LEU LEU A . n A 1 66 GLU 66 163 163 GLU GLU A . n A 1 67 GLU 67 164 164 GLU GLU A . n A 1 68 GLY 68 165 165 GLY GLY A . n A 1 69 ILE 69 166 166 ILE ILE A . n A 1 70 GLN 70 167 167 GLN GLN A . n A 1 71 GLU 71 168 168 GLU GLU A . n A 1 72 ASN 72 169 169 ASN ASN A . n A 1 73 LYS 73 170 170 LYS LYS A . n A 1 74 ASP 74 171 171 ASP ASP A . n A 1 75 LEU 75 172 172 LEU LEU A . n A 1 76 ILE 76 173 173 ILE ILE A . n A 1 77 LYS 77 174 174 LYS LYS A . n A 1 78 GLU 78 175 175 GLU GLU A . n A 1 79 ASN 79 176 176 ASN ASN A . n A 1 80 ASN 80 177 177 ASN ASN A . n A 1 81 ALA 81 178 178 ALA ALA A . n A 1 82 THR 82 179 179 THR THR A . n A 1 83 ARG 83 180 180 ARG ARG A . n A 1 84 HIS 84 181 181 HIS HIS A . n A 1 85 LEU 85 182 182 LEU LEU A . n A 1 86 CYS 86 183 183 CYS CYS A . n A 1 87 ASN 87 184 184 ASN ASN A . n A 1 88 LEU 88 185 185 LEU LEU A . n A 1 89 LEU 89 186 186 LEU LEU A . n A 1 90 LYS 90 187 187 LYS LYS A . n A 1 91 GLU 91 188 188 GLU GLU A . n A 1 92 THR 92 189 189 THR THR A . n A 1 93 CYS 93 190 190 CYS CYS A . n A 1 94 ALA 94 191 191 ALA ALA A . n A 1 95 ARG 95 192 192 ARG ARG A . n A 1 96 SER 96 193 193 SER SER A . n A 1 97 ALA 97 194 194 ALA ALA A . n A 1 98 GLU 98 195 195 GLU GLU A . n A 1 99 LYS 99 196 196 LYS LYS A . n A 1 100 THR 100 197 197 THR THR A . n A 1 101 LYS 101 198 198 LYS LYS A . n A 1 102 LYS 102 199 199 LYS LYS A . n A 1 103 TYR 103 200 200 TYR TYR A . n A 1 104 GLU 104 201 201 GLU GLU A . n A 1 105 TYR 105 202 202 TYR TYR A . n A 1 106 GLU 106 203 203 GLU GLU A . n A 1 107 ARG 107 204 204 ARG ARG A . n A 1 108 GLU 108 205 205 GLU GLU A . n A 1 109 GLU 109 206 ? ? ? A . n B 1 1 GLY 1 98 ? ? ? B . n B 1 2 SER 2 99 ? ? ? B . n B 1 3 MET 3 100 ? ? ? B . n B 1 4 GLY 4 101 101 GLY GLY B . n B 1 5 LEU 5 102 102 LEU LEU B . n B 1 6 SER 6 103 103 SER SER B . n B 1 7 ARG 7 104 104 ARG ARG B . n B 1 8 VAL 8 105 105 VAL VAL B . n B 1 9 TYR 9 106 106 TYR TYR B . n B 1 10 SER 10 107 107 SER SER B . n B 1 11 LYS 11 108 108 LYS LYS B . n B 1 12 LEU 12 109 109 LEU LEU B . n B 1 13 TYR 13 110 110 TYR TYR B . n B 1 14 LYS 14 111 111 LYS LYS B . n B 1 15 GLU 15 112 112 GLU GLU B . n B 1 16 ALA 16 113 113 ALA ALA B . n B 1 17 GLU 17 114 114 GLU GLU B . n B 1 18 LYS 18 115 115 LYS LYS B . n B 1 19 ILE 19 116 116 ILE ILE B . n B 1 20 LYS 20 117 117 LYS LYS B . n B 1 21 LYS 21 118 118 LYS LYS B . n B 1 22 TRP 22 119 119 TRP TRP B . n B 1 23 LYS 23 120 120 LYS LYS B . n B 1 24 VAL 24 121 121 VAL VAL B . n B 1 25 SER 25 122 122 SER SER B . n B 1 26 THR 26 123 123 THR THR B . n B 1 27 GLU 27 124 124 GLU GLU B . n B 1 28 ALA 28 125 125 ALA ALA B . n B 1 29 GLU 29 126 126 GLU GLU B . n B 1 30 LEU 30 127 127 LEU LEU B . n B 1 31 ARG 31 128 128 ARG ARG B . n B 1 32 GLN 32 129 129 GLN GLN B . n B 1 33 LYS 33 130 130 LYS LYS B . n B 1 34 GLU 34 131 131 GLU GLU B . n B 1 35 SER 35 132 132 SER SER B . n B 1 36 LYS 36 133 133 LYS LYS B . n B 1 37 LEU 37 134 134 LEU LEU B . n B 1 38 GLN 38 135 135 GLN GLN B . n B 1 39 GLU 39 136 136 GLU GLU B . n B 1 40 ASN 40 137 137 ASN ASN B . n B 1 41 ARG 41 138 138 ARG ARG B . n B 1 42 LYS 42 139 139 LYS LYS B . n B 1 43 ILE 43 140 140 ILE ILE B . n B 1 44 ILE 44 141 141 ILE ILE B . n B 1 45 GLU 45 142 142 GLU GLU B . n B 1 46 ALA 46 143 143 ALA ALA B . n B 1 47 GLN 47 144 144 GLN GLN B . n B 1 48 ARG 48 145 145 ARG ARG B . n B 1 49 LYS 49 146 146 LYS LYS B . n B 1 50 ALA 50 147 147 ALA ALA B . n B 1 51 ILE 51 148 148 ILE ILE B . n B 1 52 GLN 52 149 149 GLN GLN B . n B 1 53 GLU 53 150 150 GLU GLU B . n B 1 54 LEU 54 151 151 LEU LEU B . n B 1 55 GLN 55 152 152 GLN GLN B . n B 1 56 PHE 56 153 153 PHE PHE B . n B 1 57 GLY 57 154 154 GLY GLY B . n B 1 58 ASN 58 155 155 ASN ASN B . n B 1 59 GLU 59 156 156 GLU GLU B . n B 1 60 LYS 60 157 157 LYS LYS B . n B 1 61 VAL 61 158 158 VAL VAL B . n B 1 62 SER 62 159 159 SER SER B . n B 1 63 LEU 63 160 160 LEU LEU B . n B 1 64 LYS 64 161 161 LYS LYS B . n B 1 65 LEU 65 162 162 LEU LEU B . n B 1 66 GLU 66 163 163 GLU GLU B . n B 1 67 GLU 67 164 164 GLU GLU B . n B 1 68 GLY 68 165 165 GLY GLY B . n B 1 69 ILE 69 166 166 ILE ILE B . n B 1 70 GLN 70 167 167 GLN GLN B . n B 1 71 GLU 71 168 168 GLU GLU B . n B 1 72 ASN 72 169 169 ASN ASN B . n B 1 73 LYS 73 170 170 LYS LYS B . n B 1 74 ASP 74 171 171 ASP ASP B . n B 1 75 LEU 75 172 172 LEU LEU B . n B 1 76 ILE 76 173 173 ILE ILE B . n B 1 77 LYS 77 174 174 LYS LYS B . n B 1 78 GLU 78 175 175 GLU GLU B . n B 1 79 ASN 79 176 176 ASN ASN B . n B 1 80 ASN 80 177 177 ASN ASN B . n B 1 81 ALA 81 178 178 ALA ALA B . n B 1 82 THR 82 179 179 THR THR B . n B 1 83 ARG 83 180 180 ARG ARG B . n B 1 84 HIS 84 181 181 HIS HIS B . n B 1 85 LEU 85 182 182 LEU LEU B . n B 1 86 CYS 86 183 183 CYS CYS B . n B 1 87 ASN 87 184 184 ASN ASN B . n B 1 88 LEU 88 185 185 LEU LEU B . n B 1 89 LEU 89 186 186 LEU LEU B . n B 1 90 LYS 90 187 187 LYS LYS B . n B 1 91 GLU 91 188 188 GLU GLU B . n B 1 92 THR 92 189 189 THR THR B . n B 1 93 CYS 93 190 190 CYS CYS B . n B 1 94 ALA 94 191 191 ALA ALA B . n B 1 95 ARG 95 192 192 ARG ARG B . n B 1 96 SER 96 193 193 SER SER B . n B 1 97 ALA 97 194 194 ALA ALA B . n B 1 98 GLU 98 195 195 GLU GLU B . n B 1 99 LYS 99 196 196 LYS LYS B . n B 1 100 THR 100 197 197 THR THR B . n B 1 101 LYS 101 198 198 LYS LYS B . n B 1 102 LYS 102 199 199 LYS LYS B . n B 1 103 TYR 103 200 200 TYR TYR B . n B 1 104 GLU 104 201 201 GLU GLU B . n B 1 105 TYR 105 202 202 TYR TYR B . n B 1 106 GLU 106 203 203 GLU GLU B . n B 1 107 ARG 107 204 204 ARG ARG B . n B 1 108 GLU 108 205 ? ? ? B . n B 1 109 GLU 109 206 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 301 1 CL CL A . D 2 CL 1 302 2 CL CL A . E 3 MPD 1 303 2 MPD MPD A . F 3 MPD 1 301 1 MPD MPD B . G 4 HOH 1 401 94 HOH HOH A . G 4 HOH 2 402 86 HOH HOH A . G 4 HOH 3 403 60 HOH HOH A . G 4 HOH 4 404 62 HOH HOH A . G 4 HOH 5 405 92 HOH HOH A . G 4 HOH 6 406 61 HOH HOH A . G 4 HOH 7 407 56 HOH HOH A . G 4 HOH 8 408 78 HOH HOH A . G 4 HOH 9 409 73 HOH HOH A . G 4 HOH 10 410 84 HOH HOH A . G 4 HOH 11 411 5 HOH HOH A . G 4 HOH 12 412 57 HOH HOH A . G 4 HOH 13 413 46 HOH HOH A . G 4 HOH 14 414 17 HOH HOH A . G 4 HOH 15 415 1 HOH HOH A . G 4 HOH 16 416 6 HOH HOH A . G 4 HOH 17 417 51 HOH HOH A . G 4 HOH 18 418 26 HOH HOH A . G 4 HOH 19 419 2 HOH HOH A . G 4 HOH 20 420 27 HOH HOH A . G 4 HOH 21 421 22 HOH HOH A . G 4 HOH 22 422 47 HOH HOH A . G 4 HOH 23 423 102 HOH HOH A . G 4 HOH 24 424 65 HOH HOH A . G 4 HOH 25 425 34 HOH HOH A . G 4 HOH 26 426 29 HOH HOH A . G 4 HOH 27 427 8 HOH HOH A . G 4 HOH 28 428 12 HOH HOH A . G 4 HOH 29 429 76 HOH HOH A . G 4 HOH 30 430 7 HOH HOH A . G 4 HOH 31 431 71 HOH HOH A . G 4 HOH 32 432 21 HOH HOH A . G 4 HOH 33 433 54 HOH HOH A . G 4 HOH 34 434 37 HOH HOH A . G 4 HOH 35 435 97 HOH HOH A . G 4 HOH 36 436 100 HOH HOH A . G 4 HOH 37 437 67 HOH HOH A . G 4 HOH 38 438 64 HOH HOH A . G 4 HOH 39 439 81 HOH HOH A . G 4 HOH 40 440 9 HOH HOH A . G 4 HOH 41 441 104 HOH HOH A . G 4 HOH 42 442 30 HOH HOH A . G 4 HOH 43 443 16 HOH HOH A . G 4 HOH 44 444 4 HOH HOH A . G 4 HOH 45 445 23 HOH HOH A . G 4 HOH 46 446 85 HOH HOH A . G 4 HOH 47 447 18 HOH HOH A . G 4 HOH 48 448 103 HOH HOH A . G 4 HOH 49 449 91 HOH HOH A . G 4 HOH 50 450 42 HOH HOH A . G 4 HOH 51 451 98 HOH HOH A . G 4 HOH 52 452 74 HOH HOH A . G 4 HOH 53 453 48 HOH HOH A . G 4 HOH 54 454 87 HOH HOH A . G 4 HOH 55 455 58 HOH HOH A . G 4 HOH 56 456 33 HOH HOH A . G 4 HOH 57 457 66 HOH HOH A . G 4 HOH 58 458 88 HOH HOH A . H 4 HOH 1 401 55 HOH HOH B . H 4 HOH 2 402 101 HOH HOH B . H 4 HOH 3 403 3 HOH HOH B . H 4 HOH 4 404 80 HOH HOH B . H 4 HOH 5 405 53 HOH HOH B . H 4 HOH 6 406 10 HOH HOH B . H 4 HOH 7 407 82 HOH HOH B . H 4 HOH 8 408 39 HOH HOH B . H 4 HOH 9 409 49 HOH HOH B . H 4 HOH 10 410 43 HOH HOH B . H 4 HOH 11 411 93 HOH HOH B . H 4 HOH 12 412 13 HOH HOH B . H 4 HOH 13 413 50 HOH HOH B . H 4 HOH 14 414 31 HOH HOH B . H 4 HOH 15 415 79 HOH HOH B . H 4 HOH 16 416 15 HOH HOH B . H 4 HOH 17 417 95 HOH HOH B . H 4 HOH 18 418 63 HOH HOH B . H 4 HOH 19 419 19 HOH HOH B . H 4 HOH 20 420 14 HOH HOH B . H 4 HOH 21 421 77 HOH HOH B . H 4 HOH 22 422 25 HOH HOH B . H 4 HOH 23 423 59 HOH HOH B . H 4 HOH 24 424 45 HOH HOH B . H 4 HOH 25 425 11 HOH HOH B . H 4 HOH 26 426 40 HOH HOH B . H 4 HOH 27 427 44 HOH HOH B . H 4 HOH 28 428 24 HOH HOH B . H 4 HOH 29 429 20 HOH HOH B . H 4 HOH 30 430 28 HOH HOH B . H 4 HOH 31 431 35 HOH HOH B . H 4 HOH 32 432 68 HOH HOH B . H 4 HOH 33 433 38 HOH HOH B . H 4 HOH 34 434 96 HOH HOH B . H 4 HOH 35 435 32 HOH HOH B . H 4 HOH 36 436 36 HOH HOH B . H 4 HOH 37 437 90 HOH HOH B . H 4 HOH 38 438 75 HOH HOH B . H 4 HOH 39 439 41 HOH HOH B . H 4 HOH 40 440 69 HOH HOH B . H 4 HOH 41 441 70 HOH HOH B . H 4 HOH 42 442 52 HOH HOH B . H 4 HOH 43 443 72 HOH HOH B . H 4 HOH 44 444 99 HOH HOH B . H 4 HOH 45 445 83 HOH HOH B . H 4 HOH 46 446 89 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13310 ? 1 MORE -189 ? 1 'SSA (A^2)' 30880 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_357 -x-2,y,-z+2 -1.0000000000 0.0000000000 0.0000000000 -193.5635803780 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 207.9292852028 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-06-06 2 'Structure model' 1 1 2018-07-04 3 'Structure model' 1 2 2018-08-01 4 'Structure model' 1 3 2020-04-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' pdbx_related_exp_data_set # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_DOI' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12rc1_2807: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AMPLE ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HD22 B ASN 137 ? ? O B HOH 401 ? ? 1.58 2 1 O A GLU 205 ? ? O A HOH 401 ? ? 2.00 3 1 OE2 A GLU 201 ? ? OH B TYR 200 ? ? 2.07 4 1 OG A SER 193 ? ? OG B SER 193 ? ? 2.07 5 1 OE2 A GLU 114 ? ? O A HOH 402 ? ? 2.16 6 1 O A HOH 424 ? ? O A HOH 452 ? ? 2.16 7 1 O A HOH 436 ? ? O A HOH 439 ? ? 2.17 8 1 O B HOH 434 ? ? O B HOH 445 ? ? 2.18 9 1 O B HOH 440 ? ? O B HOH 446 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 440 ? ? 1_555 O B HOH 441 ? ? 2_457 2.12 2 1 O A HOH 437 ? ? 1_555 O B HOH 432 ? ? 4_547 2.16 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 458 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.15 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 98 ? A GLY 1 2 1 Y 1 A SER 99 ? A SER 2 3 1 Y 1 A MET 100 ? A MET 3 4 1 Y 1 A GLU 206 ? A GLU 109 5 1 Y 1 B GLY 98 ? B GLY 1 6 1 Y 1 B SER 99 ? B SER 2 7 1 Y 1 B MET 100 ? B MET 3 8 1 Y 1 B GLU 205 ? B GLU 108 9 1 Y 1 B GLU 206 ? B GLU 109 # _pdbx_audit_support.funding_organization 'Wellcome Trust and Royal Society' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 104158/Z/14/Z _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # _pdbx_related_exp_data_set.ordinal 1 _pdbx_related_exp_data_set.data_reference 10.18430/m36f62 _pdbx_related_exp_data_set.data_set_type 'diffraction image data' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ;Head-to-head assembly occurs in the context of the wider molecule through cooperativity; confirmed through MALS and SAXS with point mutagenesis. ; #