HEADER IMMUNE SYSTEM 11-DEC-17 6F7T TITLE CRYSTAL STRUCTURE OF AN FAB FRAGMENT IN COMPLEX WITH A PEPTIDE FROM TITLE 2 BACILLUS SUBTILIS RNASE Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB RY79-90, LIGHT CHAIN; COMPND 3 CHAIN: A, L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: FAB RY79-90, HEAVY CHAIN; COMPND 6 CHAIN: B, H; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: RIBONUCLEASE Y; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 79-90; COMPND 11 SYNONYM: RNASE Y; COMPND 12 EC: 3.1.-.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 10 ORGANISM_TAXID: 1423 KEYWDS FAB-PEPTIDE COMPLEX, LAMBDA X LIGHT CHAIN, RNASE Y, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.GOLINELLI-PIMPANEAU,P.HARDOUIN REVDAT 4 17-JAN-24 6F7T 1 REMARK REVDAT 3 19-DEC-18 6F7T 1 JRNL REVDAT 2 28-NOV-18 6F7T 1 JRNL REVDAT 1 31-OCT-18 6F7T 0 JRNL AUTH P.HARDOUIN,C.VELOURS,C.BOU-NADER,N.ASSRIR,S.LAALAMI, JRNL AUTH 2 H.PUTZER,D.DURAND,B.GOLINELLI-PIMPANEAU JRNL TITL DISSOCIATION OF THE DIMER OF THE INTRINSICALLY DISORDERED JRNL TITL 2 DOMAIN OF RNASE Y UPON ANTIBODY BINDING. JRNL REF BIOPHYS. J. V. 115 2102 2018 JRNL REFN ESSN 1542-0086 JRNL PMID 30447990 JRNL DOI 10.1016/J.BPJ.2018.10.016 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1464 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2825 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2292 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2684 REMARK 3 BIN R VALUE (WORKING SET) : 0.2261 REMARK 3 BIN FREE R VALUE : 0.2881 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6741 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.84450 REMARK 3 B22 (A**2) : -4.32450 REMARK 3 B33 (A**2) : 7.16900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 2.905 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.321 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.249 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.321 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6929 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9441 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2303 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1153 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6929 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 942 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7606 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.26 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.20 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.19 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* L|* C|*} REMARK 3 ORIGIN FOR THE GROUP (A): -17.3109 -2.8843 -43.5537 REMARK 3 T TENSOR REMARK 3 T11: -0.2269 T22: -0.0001 REMARK 3 T33: -0.2262 T12: 0.0420 REMARK 3 T13: 0.0067 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.3591 L22: 0.6595 REMARK 3 L33: 0.7753 L12: 0.0260 REMARK 3 L13: 0.2126 L23: -0.1229 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: 0.0340 S13: -0.0800 REMARK 3 S21: -0.0017 S22: -0.0137 S23: -0.0349 REMARK 3 S31: 0.0189 S32: -0.2937 S33: -0.0674 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* H|* D|*} REMARK 3 ORIGIN FOR THE GROUP (A): -32.5924 -1.4173 -45.3270 REMARK 3 T TENSOR REMARK 3 T11: -0.1876 T22: 0.0844 REMARK 3 T33: -0.0647 T12: 0.0459 REMARK 3 T13: -0.0197 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.3339 L22: 0.6565 REMARK 3 L33: 0.1749 L12: 0.1488 REMARK 3 L13: 0.4248 L23: -0.4166 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.1295 S13: -0.0688 REMARK 3 S21: -0.0753 S22: 0.0552 S23: 0.2175 REMARK 3 S31: 0.0064 S32: -0.3305 S33: -0.0763 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 0.7.14 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29393 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.63 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QHR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2; 0.1M TRIS; 16% (W/V) PEG REMARK 280 4000, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.34000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.34000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG L 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 430 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 97.78 -64.37 REMARK 500 HIS A 28 -2.75 71.78 REMARK 500 SER A 67 -98.47 -116.50 REMARK 500 ILE A 94 -95.39 -105.39 REMARK 500 LYS A 95 76.97 -115.01 REMARK 500 ALA A 151 -86.98 -103.01 REMARK 500 ASN A 152 55.53 -98.28 REMARK 500 ASP A 183 -26.67 72.32 REMARK 500 SER A 190 161.14 81.31 REMARK 500 PRO B 41 -31.31 -37.44 REMARK 500 LYS B 43 -8.05 81.46 REMARK 500 VAL B 127 178.76 -59.52 REMARK 500 THR B 132 4.25 -57.02 REMARK 500 PRO B 147 -156.48 -75.29 REMARK 500 GLU B 148 55.60 -102.58 REMARK 500 SER B 158 155.41 82.86 REMARK 500 LEU B 159 -144.75 55.74 REMARK 500 SER B 160 53.16 -93.07 REMARK 500 SER B 172 -122.08 54.42 REMARK 500 PRO B 189 36.31 -87.71 REMARK 500 ARG C 3 -176.41 -177.20 REMARK 500 ASN C 11 59.25 -102.85 REMARK 500 ASN D 11 60.57 -103.37 REMARK 500 LYS H 43 -10.11 84.41 REMARK 500 LYS H 43 -12.01 85.72 REMARK 500 VAL H 127 -179.02 -62.79 REMARK 500 THR H 132 -6.05 47.82 REMARK 500 PRO H 147 -155.40 -74.77 REMARK 500 GLU H 148 56.18 -102.28 REMARK 500 TRP H 154 -76.51 -86.02 REMARK 500 SER H 156 -41.47 73.79 REMARK 500 LEU H 159 -140.32 61.05 REMARK 500 SER H 160 52.63 -92.60 REMARK 500 SER H 172 -124.94 55.59 REMARK 500 PRO H 189 36.56 -87.90 REMARK 500 LEU L 2 96.54 -63.03 REMARK 500 HIS L 28 -3.04 72.71 REMARK 500 ILE L 94 -94.68 -104.92 REMARK 500 LYS L 95 77.25 -115.25 REMARK 500 ALA L 151 -87.45 -103.54 REMARK 500 ASN L 152 55.34 -97.88 REMARK 500 ASP L 183 -26.74 72.37 REMARK 500 SER L 190 165.38 163.58 REMARK 500 ALA L 209 -151.52 -132.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 6F7T A 1 210 PDB 6F7T 6F7T 1 210 DBREF 6F7T B 1 212 PDB 6F7T 6F7T 1 212 DBREF 6F7T C 1 12 UNP O31774 RNY_BACSU 79 90 DBREF 6F7T D 1 12 UNP O31774 RNY_BACSU 79 90 DBREF 6F7T H 1 212 PDB 6F7T 6F7T 1 212 DBREF 6F7T L 1 210 PDB 6F7T 6F7T 1 210 SEQRES 1 A 218 GLN LEU VAL LEU THR GLN SER SER SER ALA SER PHE SER SEQRES 2 A 218 LEU GLY ALA SER ALA LYS LEU THR CYS THR LEU SER ARG SEQRES 3 A 218 GLN HIS SER THR TYR THR ILE GLU TRP TYR GLN GLN GLN SEQRES 4 A 218 PRO LEU LYS PRO PRO LYS TYR VAL MET GLU LEU LYS LYS SEQRES 5 A 218 ASP GLY SER HIS SER THR GLY ASP GLY ILE PRO ASP ARG SEQRES 6 A 218 PHE SER GLY SER SER SER GLY ALA ASP ARG TYR LEU SER SEQRES 7 A 218 ILE SER ASN ILE GLN GLU GLU ASP GLU ALA ILE TYR ILE SEQRES 8 A 218 CYS GLY VAL GLY ASP THR ILE LYS GLU GLN PHE VAL TYR SEQRES 9 A 218 VAL PHE GLY GLY GLY THR LYS VAL THR VAL LEU GLY GLN SEQRES 10 A 218 PRO LYS SER THR PRO THR LEU THR VAL PHE PRO PRO SER SEQRES 11 A 218 SER GLU GLU LEU LYS GLU ASN LYS ALA THR LEU VAL CYS SEQRES 12 A 218 LEU ILE SER ASN PHE SER PRO SER GLY VAL THR VAL ALA SEQRES 13 A 218 TRP LYS ALA ASN GLY THR PRO ILE THR GLN GLY VAL ASP SEQRES 14 A 218 THR SER ASN PRO THR LYS GLU GLY ASN LYS PHE MET ALA SEQRES 15 A 218 SER SER PHE LEU HIS LEU THR SER ASP GLN TRP ARG SER SEQRES 16 A 218 HIS ASN SER PHE THR CYS GLN VAL THR HIS GLU GLY ASP SEQRES 17 A 218 THR VAL GLU LYS SER LEU SER PRO ALA GLU SEQRES 1 B 211 GLN VAL GLN LEU GLN GLU SER GLY PRO GLU LEU LYS LYS SEQRES 2 B 211 PRO GLY GLU THR VAL LYS ILE SER CYS LYS VAL SER GLY SEQRES 3 B 211 TYR PRO PHE THR ASN TYR GLY MET ASN TRP VAL LYS GLN SEQRES 4 B 211 ALA PRO ARG LYS VAL LEU LYS TRP MET GLY TRP ILE ASP SEQRES 5 B 211 THR TYR THR GLY ASP PRO THR TYR ALA ASP ASP PHE LYS SEQRES 6 B 211 GLY ARG PHE ALA PHE SER LEU ASP THR SER ALA SER THR SEQRES 7 B 211 ALA TYR LEU GLN ILE ASN ASN LEU LYS ASN GLU ASP THR SEQRES 8 B 211 ALA THR TYR PHE CYS ALA ARG GLY THR TYR TRP GLY GLN SEQRES 9 B 211 GLY THR LEU VAL THR VAL SER ALA ALA LYS THR THR ALA SEQRES 10 B 211 PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR SEQRES 11 B 211 THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 12 B 211 TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SEQRES 13 B 211 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 14 B 211 GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 15 B 211 THR SER SER THR TRP PRO SER GLN SER ILE THR CYS ASN SEQRES 16 B 211 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 17 B 211 ILE GLU PRO SEQRES 1 C 12 GLU ARG ARG ASN GLU LEU GLN LYS GLN GLU ASN ARG SEQRES 1 D 12 GLU ARG ARG ASN GLU LEU GLN LYS GLN GLU ASN ARG SEQRES 1 H 211 GLN VAL GLN LEU GLN GLU SER GLY PRO GLU LEU LYS LYS SEQRES 2 H 211 PRO GLY GLU THR VAL LYS ILE SER CYS LYS VAL SER GLY SEQRES 3 H 211 TYR PRO PHE THR ASN TYR GLY MET ASN TRP VAL LYS GLN SEQRES 4 H 211 ALA PRO ARG LYS VAL LEU LYS TRP MET GLY TRP ILE ASP SEQRES 5 H 211 THR TYR THR GLY ASP PRO THR TYR ALA ASP ASP PHE LYS SEQRES 6 H 211 GLY ARG PHE ALA PHE SER LEU ASP THR SER ALA SER THR SEQRES 7 H 211 ALA TYR LEU GLN ILE ASN ASN LEU LYS ASN GLU ASP THR SEQRES 8 H 211 ALA THR TYR PHE CYS ALA ARG GLY THR TYR TRP GLY GLN SEQRES 9 H 211 GLY THR LEU VAL THR VAL SER ALA ALA LYS THR THR ALA SEQRES 10 H 211 PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR SEQRES 11 H 211 THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 12 H 211 TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SEQRES 13 H 211 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 14 H 211 GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 15 H 211 THR SER SER THR TRP PRO SER GLN SER ILE THR CYS ASN SEQRES 16 H 211 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 17 H 211 ILE GLU PRO SEQRES 1 L 218 GLN LEU VAL LEU THR GLN SER SER SER ALA SER PHE SER SEQRES 2 L 218 LEU GLY ALA SER ALA LYS LEU THR CYS THR LEU SER ARG SEQRES 3 L 218 GLN HIS SER THR TYR THR ILE GLU TRP TYR GLN GLN GLN SEQRES 4 L 218 PRO LEU LYS PRO PRO LYS TYR VAL MET GLU LEU LYS LYS SEQRES 5 L 218 ASP GLY SER HIS SER THR GLY ASP GLY ILE PRO ASP ARG SEQRES 6 L 218 PHE SER GLY SER SER SER GLY ALA ASP ARG TYR LEU SER SEQRES 7 L 218 ILE SER ASN ILE GLN GLU GLU ASP GLU ALA ILE TYR ILE SEQRES 8 L 218 CYS GLY VAL GLY ASP THR ILE LYS GLU GLN PHE VAL TYR SEQRES 9 L 218 VAL PHE GLY GLY GLY THR LYS VAL THR VAL LEU GLY GLN SEQRES 10 L 218 PRO LYS SER THR PRO THR LEU THR VAL PHE PRO PRO SER SEQRES 11 L 218 SER GLU GLU LEU LYS GLU ASN LYS ALA THR LEU VAL CYS SEQRES 12 L 218 LEU ILE SER ASN PHE SER PRO SER GLY VAL THR VAL ALA SEQRES 13 L 218 TRP LYS ALA ASN GLY THR PRO ILE THR GLN GLY VAL ASP SEQRES 14 L 218 THR SER ASN PRO THR LYS GLU GLY ASN LYS PHE MET ALA SEQRES 15 L 218 SER SER PHE LEU HIS LEU THR SER ASP GLN TRP ARG SER SEQRES 16 L 218 HIS ASN SER PHE THR CYS GLN VAL THR HIS GLU GLY ASP SEQRES 17 L 218 THR VAL GLU LYS SER LEU SER PRO ALA GLU HET MG L 301 1 HETNAM MG MAGNESIUM ION FORMUL 7 MG MG 2+ FORMUL 8 HOH *258(H2 O) HELIX 1 AA1 GLN A 79 GLU A 83 5 5 HELIX 2 AA2 SER A 122 LYS A 127 1 6 HELIX 3 AA3 PRO B 28 TYR B 32 5 5 HELIX 4 AA4 ASP B 61 LYS B 64 5 4 HELIX 5 AA5 LYS B 83 THR B 87 5 5 HELIX 6 AA6 PRO H 28 TYR H 32 5 5 HELIX 7 AA7 ASP H 61 LYS H 64 5 4 HELIX 8 AA8 LYS H 83 THR H 87 5 5 HELIX 9 AA9 GLN L 79 GLU L 83 5 5 HELIX 10 AB1 SER L 122 LYS L 127 1 6 SHEET 1 AA1 4 LEU A 4 THR A 5 0 SHEET 2 AA1 4 ALA A 19 LEU A 25 -1 O THR A 24 N THR A 5 SHEET 3 AA1 4 ASP A 70 ILE A 75 -1 O ARG A 71 N CYS A 23 SHEET 4 AA1 4 PHE A 62 SER A 66 -1 N SER A 63 O SER A 74 SHEET 1 AA2 6 SER A 10 SER A 14 0 SHEET 2 AA2 6 THR A 102 LEU A 107 1 O LEU A 107 N PHE A 13 SHEET 3 AA2 6 ALA A 84 THR A 93 -1 N ALA A 84 O VAL A 104 SHEET 4 AA2 6 ILE A 33 GLN A 38 -1 N GLN A 38 O ILE A 85 SHEET 5 AA2 6 LYS A 45 LEU A 50 -1 O VAL A 47 N TRP A 35 SHEET 6 AA2 6 HIS A 54B THR A 54D-1 O SER A 54C N GLU A 49 SHEET 1 AA3 4 SER A 10 SER A 14 0 SHEET 2 AA3 4 THR A 102 LEU A 107 1 O LEU A 107 N PHE A 13 SHEET 3 AA3 4 ALA A 84 THR A 93 -1 N ALA A 84 O VAL A 104 SHEET 4 AA3 4 PHE A 95C PHE A 98 -1 O VAL A 97 N VAL A 90 SHEET 1 AA4 4 THR A 115 PHE A 119 0 SHEET 2 AA4 4 LYS A 130 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 AA4 4 LYS A 171 THR A 181 -1 O LEU A 180 N ALA A 131 SHEET 4 AA4 4 VAL A 160 THR A 162 -1 N ASP A 161 O PHE A 177 SHEET 1 AA5 4 THR A 115 PHE A 119 0 SHEET 2 AA5 4 LYS A 130 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 AA5 4 LYS A 171 THR A 181 -1 O LEU A 180 N ALA A 131 SHEET 4 AA5 4 THR A 166 GLU A 168 -1 N THR A 166 O MET A 173 SHEET 1 AA6 4 PRO A 155 ILE A 156 0 SHEET 2 AA6 4 THR A 146 LYS A 150 -1 N TRP A 149 O ILE A 156 SHEET 3 AA6 4 PHE A 191 HIS A 197 -1 O GLN A 194 N ALA A 148 SHEET 4 AA6 4 ASP A 200 LEU A 206 -1 O VAL A 202 N VAL A 195 SHEET 1 AA7 4 GLN B 3 GLU B 6 0 SHEET 2 AA7 4 VAL B 18 SER B 25 -1 O LYS B 23 N GLN B 5 SHEET 3 AA7 4 THR B 77 ILE B 82 -1 O LEU B 80 N ILE B 20 SHEET 4 AA7 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 AA8 6 GLU B 10 LYS B 12 0 SHEET 2 AA8 6 THR B 107 VAL B 111 1 O LEU B 108 N GLU B 10 SHEET 3 AA8 6 ALA B 88 ALA B 93 -1 N ALA B 88 O VAL B 109 SHEET 4 AA8 6 MET B 34 GLN B 39 -1 N ASN B 35 O ALA B 93 SHEET 5 AA8 6 LEU B 45 ILE B 51 -1 O MET B 48 N TRP B 36 SHEET 6 AA8 6 PRO B 57 TYR B 59 -1 O THR B 58 N TRP B 50 SHEET 1 AA9 4 SER B 120 LEU B 124 0 SHEET 2 AA9 4 SER B 135 TYR B 145 -1 O GLY B 139 N LEU B 124 SHEET 3 AA9 4 LEU B 174 THR B 184 -1 O VAL B 181 N LEU B 138 SHEET 4 AA9 4 HIS B 164 GLN B 171 -1 N PHE B 166 O SER B 178 SHEET 1 AB1 3 THR B 151 TRP B 154 0 SHEET 2 AB1 3 THR B 194 HIS B 199 -1 O ASN B 196 N THR B 153 SHEET 3 AB1 3 THR B 204 LYS B 209 -1 O VAL B 206 N VAL B 197 SHEET 1 AB2 4 GLN H 3 GLU H 6 0 SHEET 2 AB2 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AB2 4 THR H 77 ILE H 82 -1 O LEU H 80 N ILE H 20 SHEET 4 AB2 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AB3 6 GLU H 10 LYS H 12 0 SHEET 2 AB3 6 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 AB3 6 ALA H 88 ALA H 93 -1 N ALA H 88 O VAL H 109 SHEET 4 AB3 6 MET H 34 GLN H 39 -1 N ASN H 35 O ALA H 93 SHEET 5 AB3 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AB3 6 PRO H 57 TYR H 59 -1 O THR H 58 N TRP H 50 SHEET 1 AB4 4 SER H 120 LEU H 124 0 SHEET 2 AB4 4 SER H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB4 4 LEU H 174 THR H 184 -1 O VAL H 181 N LEU H 138 SHEET 4 AB4 4 HIS H 164 GLN H 171 -1 N PHE H 166 O SER H 178 SHEET 1 AB5 3 THR H 151 THR H 153 0 SHEET 2 AB5 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 AB5 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 AB6 4 LEU L 4 THR L 5 0 SHEET 2 AB6 4 ALA L 19 LEU L 25 -1 O THR L 24 N THR L 5 SHEET 3 AB6 4 ASP L 70 ILE L 75 -1 O ARG L 71 N CYS L 23 SHEET 4 AB6 4 PHE L 62 SER L 67 -1 N SER L 63 O SER L 74 SHEET 1 AB7 6 SER L 10 SER L 14 0 SHEET 2 AB7 6 THR L 102 LEU L 107 1 O LEU L 107 N PHE L 13 SHEET 3 AB7 6 ALA L 84 THR L 93 -1 N ALA L 84 O VAL L 104 SHEET 4 AB7 6 ILE L 33 GLN L 38 -1 N GLN L 38 O ILE L 85 SHEET 5 AB7 6 LYS L 45 LEU L 50 -1 O VAL L 47 N TRP L 35 SHEET 6 AB7 6 HIS L 54B THR L 54D-1 O SER L 54C N GLU L 49 SHEET 1 AB8 4 SER L 10 SER L 14 0 SHEET 2 AB8 4 THR L 102 LEU L 107 1 O LEU L 107 N PHE L 13 SHEET 3 AB8 4 ALA L 84 THR L 93 -1 N ALA L 84 O VAL L 104 SHEET 4 AB8 4 PHE L 95C PHE L 98 -1 O VAL L 97 N VAL L 90 SHEET 1 AB9 4 THR L 115 PHE L 119 0 SHEET 2 AB9 4 LYS L 130 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AB9 4 LYS L 171 THR L 181 -1 O LEU L 180 N ALA L 131 SHEET 4 AB9 4 VAL L 160 THR L 162 -1 N ASP L 161 O PHE L 177 SHEET 1 AC1 4 THR L 115 PHE L 119 0 SHEET 2 AC1 4 LYS L 130 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AC1 4 LYS L 171 THR L 181 -1 O LEU L 180 N ALA L 131 SHEET 4 AC1 4 THR L 166 GLU L 168 -1 N THR L 166 O MET L 173 SHEET 1 AC2 4 PRO L 155 ILE L 156 0 SHEET 2 AC2 4 THR L 146 LYS L 150 -1 N TRP L 149 O ILE L 156 SHEET 3 AC2 4 PHE L 191 HIS L 197 -1 O GLN L 194 N ALA L 148 SHEET 4 AC2 4 ASP L 200 LEU L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS A 135 CYS A 193 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.04 SSBOND 4 CYS B 140 CYS B 195 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 6 CYS H 140 CYS H 195 1555 1555 2.04 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 8 CYS L 135 CYS L 193 1555 1555 2.04 CISPEP 1 SER A 141 PRO A 142 0 -1.00 CISPEP 2 PHE B 146 PRO B 147 0 -0.76 CISPEP 3 TRP B 188 PRO B 189 0 2.41 CISPEP 4 PHE H 146 PRO H 147 0 -1.40 CISPEP 5 TRP H 188 PRO H 189 0 2.51 CISPEP 6 SER L 141 PRO L 142 0 -2.14 CRYST1 98.680 130.450 72.050 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013879 0.00000