HEADER FLAVOPROTEIN 12-DEC-17 6F7V TITLE CRYSTAL STRUCTURE OF LKCE E64Q MUTANT IN COMPLEX WITH LC-KA05 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LKCE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AMINE OXIDASE; COMPND 5 EC: 1.4.3.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ROCHEI SUBSP. VOLUBILIS; SOURCE 3 ORGANISM_TAXID: 885435; SOURCE 4 GENE: LKCE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AMINE OXYDASE, CYCLASE, POST-PKS ENZYME, TAYLORING ENZYME, KEYWDS 2 FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.DORIVAL,F.RISSER,C.JACOB,S.COLLIN,G.DRAGER,A.KIRSCHNING,C.PARIS, AUTHOR 2 B.CHAGOT,A.GRUEZ,K.J.WEISSMAN REVDAT 3 08-MAY-24 6F7V 1 COMPND HETNAM REVDAT 2 10-OCT-18 6F7V 1 JRNL REVDAT 1 19-SEP-18 6F7V 0 JRNL AUTH J.DORIVAL,F.RISSER,C.JACOB,S.COLLIN,G.DRAGER,C.PARIS, JRNL AUTH 2 B.CHAGOT,A.KIRSCHNING,A.GRUEZ,K.J.WEISSMAN JRNL TITL INSIGHTS INTO A DUAL FUNCTION AMIDE OXIDASE/MACROCYCLASE JRNL TITL 2 FROM LANKACIDIN BIOSYNTHESIS. JRNL REF NAT COMMUN V. 9 3998 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30266997 JRNL DOI 10.1038/S41467-018-06323-W REMARK 2 REMARK 2 RESOLUTION. 3.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1170 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1672 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 185 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.11000 REMARK 3 B22 (A**2) : 2.11000 REMARK 3 B33 (A**2) : -4.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.419 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.305 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.082 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7177 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6424 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9751 ; 1.605 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14888 ; 1.129 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 858 ; 6.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;38.079 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1116 ;15.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;16.973 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1039 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7992 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1530 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6F7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95371 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24814 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.030 REMARK 200 RESOLUTION RANGE LOW (A) : 48.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 29.70 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 27.90 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16 % PEG 8000, 160 MM CALCIUM ACETATE, REMARK 280 BIS TRIS 100 MM PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.69600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.41700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.41700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.34800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.41700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.41700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.04400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.41700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.41700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.34800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.41700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.41700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 118.04400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.69600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 660 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 134 REMARK 465 ASP A 135 REMARK 465 ASP A 136 REMARK 465 SER A 137 REMARK 465 TYR A 138 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLY B 134 REMARK 465 ASP B 135 REMARK 465 ASP B 136 REMARK 465 SER B 137 REMARK 465 TYR B 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 64 -44.24 -131.39 REMARK 500 PRO A 131 2.50 -59.38 REMARK 500 GLN A 140 57.19 -107.09 REMARK 500 ALA A 160 -64.10 -127.36 REMARK 500 ASP A 352 105.32 -46.29 REMARK 500 LEU A 378 -2.29 -57.39 REMARK 500 LEU A 413 33.97 -96.23 REMARK 500 GLN B 64 -45.13 -130.48 REMARK 500 PRO B 131 3.03 -61.38 REMARK 500 GLN B 140 60.51 -108.51 REMARK 500 ALA B 160 -64.13 -127.16 REMARK 500 ARG B 316 31.64 -98.02 REMARK 500 ASP B 352 105.39 -47.97 REMARK 500 LEU B 378 -1.44 -58.04 REMARK 500 LEU B 413 33.50 -96.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 666 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH A 667 DISTANCE = 9.18 ANGSTROMS REMARK 525 HOH B 669 DISTANCE = 7.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 114 OE2 REMARK 620 2 GLU A 114 OE2 0.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CWH A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CWH B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6F32 RELATED DB: PDB REMARK 900 6F32 IS THE STRUCTURE OF WILD TYPE LKCE WITH SUBSTRATE ANALOGUES DBREF 6F7V A 1 438 UNP G4V2H3 G4V2H3_STRRO 1 438 DBREF 6F7V B 1 438 UNP G4V2H3 G4V2H3_STRRO 1 438 SEQADV 6F7V GLY A -3 UNP G4V2H3 EXPRESSION TAG SEQADV 6F7V PRO A -2 UNP G4V2H3 EXPRESSION TAG SEQADV 6F7V GLY A -1 UNP G4V2H3 EXPRESSION TAG SEQADV 6F7V SER A 0 UNP G4V2H3 EXPRESSION TAG SEQADV 6F7V GLN A 64 UNP G4V2H3 GLU 64 ENGINEERED MUTATION SEQADV 6F7V GLY B -3 UNP G4V2H3 EXPRESSION TAG SEQADV 6F7V PRO B -2 UNP G4V2H3 EXPRESSION TAG SEQADV 6F7V GLY B -1 UNP G4V2H3 EXPRESSION TAG SEQADV 6F7V SER B 0 UNP G4V2H3 EXPRESSION TAG SEQADV 6F7V GLN B 64 UNP G4V2H3 GLU 64 ENGINEERED MUTATION SEQRES 1 A 442 GLY PRO GLY SER MET THR VAL VAL GLU ALA LYS SER ARG SEQRES 2 A 442 ILE ALA VAL VAL GLY GLY GLY GLY SER GLY SER VAL ALA SEQRES 3 A 442 ALA TRP LEU LEU ALA ARG ARG HIS ASP VAL THR LEU PHE SEQRES 4 A 442 GLU ALA ASP GLU TYR LEU GLY GLY HIS ALA TYR SER HIS SEQRES 5 A 442 PRO VAL GLU THR ASP GLN GLY THR LEU HIS VAL ASP MET SEQRES 6 A 442 GLY VAL GLN HIS PHE ASN GLU LYS LEU SER PRO ASN LEU SEQRES 7 A 442 PHE ARG LEU LEU THR ASP PHE GLY ILE GLY THR TYR VAL SEQRES 8 A 442 ALA PRO SER SER VAL HIS VAL ASP PHE PRO GLY GLU GLN SEQRES 9 A 442 GLN SER TRP ASN ASN LEU ASP PHE LEU GLY GLU LEU ARG SEQRES 10 A 442 GLU GLU LEU HIS GLU GLU PHE ASP ARG PHE HIS GLN GLU SEQRES 11 A 442 MET ASN GLN LEU PRO THR SER GLY ASP ASP SER TYR LYS SEQRES 12 A 442 GLN MET SER ILE GLY GLU TYR LEU ASP LYS HIS GLY TYR SEQRES 13 A 442 SER LYS SER PHE LYS TYR LYS ALA MET ASN PRO ILE LEU SEQRES 14 A 442 SER ILE TYR SER GLY CYS HIS ALA PRO SER LEU ASP TYR SEQRES 15 A 442 ASN LEU MET TYR VAL ALA LEU SER PHE SER MET ASN LEU SEQRES 16 A 442 LEU SER PHE PHE SER ALA GLY TYR TRP ARG LYS ALA GLN SEQRES 17 A 442 GLY GLY ILE HIS SER TYR LEU ALA ARG ILE GLU SER ASP SEQRES 18 A 442 LEU GLY GLU ARG VAL ARG LEU ASN THR PRO VAL GLU ALA SEQRES 19 A 442 VAL VAL PRO THR GLN SER GLY VAL THR VAL LEU ALA GLY SEQRES 20 A 442 GLY GLN GLU HIS HIS PHE ASP GLN VAL VAL PHE ALA THR SEQRES 21 A 442 HIS ALA ASP VAL THR LEU ARG LEU LEU ARG THR SER ASP SEQRES 22 A 442 GLN GLN TYR ARG ASP LEU LEU GLY ASP PHE ALA TYR VAL SEQRES 23 A 442 PRO VAL GLU SER VAL LEU HIS GLN ASP GLU SER TRP LEU SEQRES 24 A 442 SER PRO ALA GLY GLY GLY ALA TYR CYS GLN PHE ARG MET SEQRES 25 A 442 PRO GLU GLY PHE GLU LEU ALA ARG ALA GLU GLU GLN MET SEQRES 26 A 442 GLY SER LEU THR ARG ASN CYS ASN VAL LEU HIS PRO TYR SEQRES 27 A 442 ARG LYS VAL SER SER PRO ILE LEU ILE THR PHE ASP PRO SEQRES 28 A 442 GLN GLU ASP VAL ASP PRO GLU ARG VAL ILE VAL ARG ARG SEQRES 29 A 442 GLU TRP LYS LEU PRO GLN LEU ARG PRO VAL ASP VAL ARG SEQRES 30 A 442 ARG LYS LYS ARG LEU HIS GLU ILE GLN GLY LEU ASN GLY SEQRES 31 A 442 LEU TRP PHE CYS GLY THR ASP THR SER VAL THR GLY HIS SEQRES 32 A 442 GLU GLY ALA ILE VAL SER GLY MET VAL ILE ALA ASP ARG SEQRES 33 A 442 LEU GLY VAL PRO HIS PRO PHE PRO ASP ASP ALA PRO ALA SEQRES 34 A 442 ALA ALA GLN PHE ARG GLY ILE LYS GLU PHE MET GLY VAL SEQRES 1 B 442 GLY PRO GLY SER MET THR VAL VAL GLU ALA LYS SER ARG SEQRES 2 B 442 ILE ALA VAL VAL GLY GLY GLY GLY SER GLY SER VAL ALA SEQRES 3 B 442 ALA TRP LEU LEU ALA ARG ARG HIS ASP VAL THR LEU PHE SEQRES 4 B 442 GLU ALA ASP GLU TYR LEU GLY GLY HIS ALA TYR SER HIS SEQRES 5 B 442 PRO VAL GLU THR ASP GLN GLY THR LEU HIS VAL ASP MET SEQRES 6 B 442 GLY VAL GLN HIS PHE ASN GLU LYS LEU SER PRO ASN LEU SEQRES 7 B 442 PHE ARG LEU LEU THR ASP PHE GLY ILE GLY THR TYR VAL SEQRES 8 B 442 ALA PRO SER SER VAL HIS VAL ASP PHE PRO GLY GLU GLN SEQRES 9 B 442 GLN SER TRP ASN ASN LEU ASP PHE LEU GLY GLU LEU ARG SEQRES 10 B 442 GLU GLU LEU HIS GLU GLU PHE ASP ARG PHE HIS GLN GLU SEQRES 11 B 442 MET ASN GLN LEU PRO THR SER GLY ASP ASP SER TYR LYS SEQRES 12 B 442 GLN MET SER ILE GLY GLU TYR LEU ASP LYS HIS GLY TYR SEQRES 13 B 442 SER LYS SER PHE LYS TYR LYS ALA MET ASN PRO ILE LEU SEQRES 14 B 442 SER ILE TYR SER GLY CYS HIS ALA PRO SER LEU ASP TYR SEQRES 15 B 442 ASN LEU MET TYR VAL ALA LEU SER PHE SER MET ASN LEU SEQRES 16 B 442 LEU SER PHE PHE SER ALA GLY TYR TRP ARG LYS ALA GLN SEQRES 17 B 442 GLY GLY ILE HIS SER TYR LEU ALA ARG ILE GLU SER ASP SEQRES 18 B 442 LEU GLY GLU ARG VAL ARG LEU ASN THR PRO VAL GLU ALA SEQRES 19 B 442 VAL VAL PRO THR GLN SER GLY VAL THR VAL LEU ALA GLY SEQRES 20 B 442 GLY GLN GLU HIS HIS PHE ASP GLN VAL VAL PHE ALA THR SEQRES 21 B 442 HIS ALA ASP VAL THR LEU ARG LEU LEU ARG THR SER ASP SEQRES 22 B 442 GLN GLN TYR ARG ASP LEU LEU GLY ASP PHE ALA TYR VAL SEQRES 23 B 442 PRO VAL GLU SER VAL LEU HIS GLN ASP GLU SER TRP LEU SEQRES 24 B 442 SER PRO ALA GLY GLY GLY ALA TYR CYS GLN PHE ARG MET SEQRES 25 B 442 PRO GLU GLY PHE GLU LEU ALA ARG ALA GLU GLU GLN MET SEQRES 26 B 442 GLY SER LEU THR ARG ASN CYS ASN VAL LEU HIS PRO TYR SEQRES 27 B 442 ARG LYS VAL SER SER PRO ILE LEU ILE THR PHE ASP PRO SEQRES 28 B 442 GLN GLU ASP VAL ASP PRO GLU ARG VAL ILE VAL ARG ARG SEQRES 29 B 442 GLU TRP LYS LEU PRO GLN LEU ARG PRO VAL ASP VAL ARG SEQRES 30 B 442 ARG LYS LYS ARG LEU HIS GLU ILE GLN GLY LEU ASN GLY SEQRES 31 B 442 LEU TRP PHE CYS GLY THR ASP THR SER VAL THR GLY HIS SEQRES 32 B 442 GLU GLY ALA ILE VAL SER GLY MET VAL ILE ALA ASP ARG SEQRES 33 B 442 LEU GLY VAL PRO HIS PRO PHE PRO ASP ASP ALA PRO ALA SEQRES 34 B 442 ALA ALA GLN PHE ARG GLY ILE LYS GLU PHE MET GLY VAL HET FAD A 501 53 HET CA A 502 1 HET CWH A 503 36 HET FAD B 501 53 HET CWH B 502 36 HET GOL B 503 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CA CALCIUM ION HETNAM CWH [(2~{S},5~{R},8~{S},11~{S})-1-[(2~{R},3~{R},5~{R}, HETNAM 2 CWH 6~{S})-3,5-DIMETHYL-6-OXIDANYL-4-OXIDANYLIDENE-OXAN-2- HETNAM 3 CWH YL]-5,11-DIMETH YL-8-OXIDANYL-13-[[(2~{S})-2- HETNAM 4 CWH OXIDANYLPROPANOYL]AMINO]TRIDECAN-2-YL] ETHANOATE HETNAM GOL GLYCEROL HETSYN CWH LC-KA05 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 CA CA 2+ FORMUL 5 CWH 2(C27 H49 N O8) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *136(H2 O) HELIX 1 AA1 GLY A 16 ALA A 27 1 12 HELIX 2 AA2 SER A 71 PHE A 81 1 11 HELIX 3 AA3 GLY A 110 LEU A 130 1 21 HELIX 4 AA4 SER A 142 HIS A 150 1 9 HELIX 5 AA5 SER A 153 ALA A 160 1 8 HELIX 6 AA6 ALA A 160 GLY A 170 1 11 HELIX 7 AA7 PRO A 174 TYR A 178 5 5 HELIX 8 AA8 ASN A 179 MET A 189 1 11 HELIX 9 AA9 ILE A 207 GLY A 219 1 13 HELIX 10 AB1 HIS A 257 LEU A 265 1 9 HELIX 11 AB2 GLN A 270 GLY A 277 1 8 HELIX 12 AB3 ASP A 291 LEU A 295 5 5 HELIX 13 AB4 GLU A 313 ALA A 317 5 5 HELIX 14 AB5 ASN A 329 ARG A 335 5 7 HELIX 15 AB6 ARG A 368 LEU A 378 1 11 HELIX 16 AB7 HIS A 379 GLN A 382 5 4 HELIX 17 AB8 GLY A 383 ASN A 385 5 3 HELIX 18 AB9 GLY A 391 SER A 395 5 5 HELIX 19 AC1 THR A 397 LEU A 413 1 17 HELIX 20 AC2 ASP A 422 MET A 436 1 15 HELIX 21 AC3 GLY B 16 ALA B 27 1 12 HELIX 22 AC4 SER B 71 PHE B 81 1 11 HELIX 23 AC5 GLY B 110 LEU B 130 1 21 HELIX 24 AC6 SER B 142 HIS B 150 1 9 HELIX 25 AC7 SER B 153 ALA B 160 1 8 HELIX 26 AC8 ALA B 160 GLY B 170 1 11 HELIX 27 AC9 PRO B 174 TYR B 178 5 5 HELIX 28 AD1 ASN B 179 MET B 189 1 11 HELIX 29 AD2 ILE B 207 GLY B 219 1 13 HELIX 30 AD3 HIS B 257 LEU B 265 1 9 HELIX 31 AD4 GLN B 270 GLY B 277 1 8 HELIX 32 AD5 ASP B 291 LEU B 295 5 5 HELIX 33 AD6 GLU B 313 ALA B 317 5 5 HELIX 34 AD7 ASN B 329 ARG B 335 5 7 HELIX 35 AD8 ARG B 368 LEU B 378 1 11 HELIX 36 AD9 HIS B 379 GLN B 382 5 4 HELIX 37 AE1 GLY B 383 ASN B 385 5 3 HELIX 38 AE2 GLY B 391 SER B 395 5 5 HELIX 39 AE3 THR B 397 LEU B 413 1 17 HELIX 40 AE4 ASP B 422 MET B 436 1 15 SHEET 1 AA1 5 VAL A 222 ARG A 223 0 SHEET 2 AA1 5 ASP A 31 PHE A 35 1 N LEU A 34 O ARG A 223 SHEET 3 AA1 5 ARG A 9 VAL A 13 1 N VAL A 12 O THR A 33 SHEET 4 AA1 5 GLN A 251 PHE A 254 1 O VAL A 253 N ALA A 11 SHEET 5 AA1 5 LEU A 387 PHE A 389 1 O TRP A 388 N PHE A 254 SHEET 1 AA2 2 SER A 47 THR A 52 0 SHEET 2 AA2 2 GLY A 55 ASP A 60 -1 O GLY A 55 N THR A 52 SHEET 1 AA3 2 THR A 85 VAL A 87 0 SHEET 2 AA3 2 ARG A 201 ALA A 203 -1 O LYS A 202 N TYR A 86 SHEET 1 AA4 7 GLN A 101 ASN A 104 0 SHEET 2 AA4 7 VAL A 92 PHE A 96 -1 N VAL A 94 O TRP A 103 SHEET 3 AA4 7 CYS A 304 ARG A 307 1 O PHE A 306 N HIS A 93 SHEET 4 AA4 7 SER A 323 ASN A 327 -1 O THR A 325 N GLN A 305 SHEET 5 AA4 7 LEU A 342 PHE A 345 -1 O PHE A 345 N LEU A 324 SHEET 6 AA4 7 TYR A 281 HIS A 289 -1 N HIS A 289 O LEU A 342 SHEET 7 AA4 7 VAL A 356 PRO A 365 -1 O ARG A 360 N SER A 286 SHEET 1 AA5 3 VAL A 228 PRO A 233 0 SHEET 2 AA5 3 VAL A 238 ALA A 242 -1 O THR A 239 N VAL A 232 SHEET 3 AA5 3 GLU A 246 PHE A 249 -1 O PHE A 249 N VAL A 238 SHEET 1 AA6 5 VAL B 222 ARG B 223 0 SHEET 2 AA6 5 ASP B 31 PHE B 35 1 N LEU B 34 O ARG B 223 SHEET 3 AA6 5 ARG B 9 VAL B 13 1 N VAL B 12 O THR B 33 SHEET 4 AA6 5 GLN B 251 PHE B 254 1 O VAL B 253 N ALA B 11 SHEET 5 AA6 5 LEU B 387 PHE B 389 1 O TRP B 388 N PHE B 254 SHEET 1 AA7 2 SER B 47 THR B 52 0 SHEET 2 AA7 2 GLY B 55 ASP B 60 -1 O GLY B 55 N THR B 52 SHEET 1 AA8 2 THR B 85 VAL B 87 0 SHEET 2 AA8 2 ARG B 201 ALA B 203 -1 O LYS B 202 N TYR B 86 SHEET 1 AA9 7 GLN B 101 ASN B 104 0 SHEET 2 AA9 7 VAL B 92 PHE B 96 -1 N VAL B 94 O TRP B 103 SHEET 3 AA9 7 CYS B 304 ARG B 307 1 O PHE B 306 N HIS B 93 SHEET 4 AA9 7 SER B 323 ASN B 327 -1 O THR B 325 N GLN B 305 SHEET 5 AA9 7 LEU B 342 PHE B 345 -1 O PHE B 345 N LEU B 324 SHEET 6 AA9 7 TYR B 281 HIS B 289 -1 N HIS B 289 O LEU B 342 SHEET 7 AA9 7 VAL B 356 PRO B 365 -1 O ARG B 360 N SER B 286 SHEET 1 AB1 3 VAL B 228 PRO B 233 0 SHEET 2 AB1 3 VAL B 238 ALA B 242 -1 O THR B 239 N VAL B 232 SHEET 3 AB1 3 GLU B 246 PHE B 249 -1 O PHE B 249 N VAL B 238 LINK OE2 GLU A 114 CA CA A 502 1555 1555 3.09 LINK OE2 GLU A 114 CA CA A 502 1555 8775 3.09 SITE 1 AC1 28 GLY A 14 GLY A 16 GLY A 17 SER A 18 SITE 2 AC1 28 PHE A 35 GLU A 36 ALA A 37 GLY A 42 SITE 3 AC1 28 GLY A 43 HIS A 44 GLY A 62 VAL A 63 SITE 4 AC1 28 GLN A 64 HIS A 65 PRO A 227 VAL A 228 SITE 5 AC1 28 ALA A 255 THR A 256 HIS A 257 VAL A 260 SITE 6 AC1 28 TRP A 362 LEU A 364 GLY A 391 THR A 392 SITE 7 AC1 28 GLY A 398 HIS A 399 CWH A 503 HOH A 616 SITE 1 AC2 2 GLU A 111 GLU A 114 SITE 1 AC3 15 GLN A 64 LEU A 70 SER A 166 ILE A 167 SITE 2 AC3 15 TYR A 168 GLY A 170 ASN A 179 ARG A 326 SITE 3 AC3 15 VAL A 372 VAL A 396 THR A 397 GLY A 398 SITE 4 AC3 15 GLN A 428 FAD A 501 HOH A 652 SITE 1 AC4 24 GLY B 14 GLY B 16 GLY B 17 SER B 18 SITE 2 AC4 24 PHE B 35 GLU B 36 ALA B 37 GLY B 42 SITE 3 AC4 24 GLY B 43 HIS B 44 GLY B 62 VAL B 63 SITE 4 AC4 24 GLN B 64 HIS B 65 VAL B 228 THR B 256 SITE 5 AC4 24 HIS B 257 LEU B 364 GLY B 391 THR B 392 SITE 6 AC4 24 GLY B 398 HIS B 399 ALA B 402 CWH B 502 SITE 1 AC5 16 GLN B 64 LEU B 70 SER B 166 ILE B 167 SITE 2 AC5 16 TYR B 168 GLY B 170 ASN B 179 MET B 181 SITE 3 AC5 16 TYR B 182 ARG B 326 VAL B 396 THR B 397 SITE 4 AC5 16 GLY B 398 GLN B 428 FAD B 501 HOH B 656 SITE 1 AC6 3 GLU B 292 ASN B 329 SER B 338 CRYST1 124.834 124.834 157.392 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006354 0.00000