HEADER TRANSFERASE 12-DEC-17 6F89 TITLE STRUCTURE OF H234A/Y235A P.ABYSSI SUA5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONYLCARBAMOYL-AMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TC-AMP SYNTHASE,L-THREONYLCARBAMOYLADENYLATE SYNTHASE,T(6) COMPND 5 A37 THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN SUA5,TRNA COMPND 6 THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN SUA5; COMPND 7 EC: 2.7.7.87; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI (STRAIN GE5 / ORSAY); SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: SUA5, PYRAB15960, PAB1302; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOTIDYLTRANSFERASE, TRNA MODIFICATION, THREONYLCARBAMOYLATION, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PICHARD-KOSTUCH,W.ZHANG,D.LIGER,M.C.DAUGERON,J.LETOQUART,I.LI DE LA AUTHOR 2 SIERRA-GALLAY,P.FORTERRE,B.COLLINET,H.VAN TILBEURGH,T.BASTA REVDAT 3 17-JAN-24 6F89 1 REMARK REVDAT 2 27-JUN-18 6F89 1 JRNL REVDAT 1 25-APR-18 6F89 0 JRNL AUTH A.PICHARD-KOSTUCH,W.ZHANG,D.LIGER,M.C.DAUGERON,J.LETOQUART, JRNL AUTH 2 I.LI DE LA SIERRA-GALLAY,P.FORTERRE,B.COLLINET, JRNL AUTH 3 H.VAN TILBEURGH,T.BASTA JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF SUA5 PROTEIN REVEALS NOVEL JRNL TITL 2 FUNCTIONAL MOTIFS REQUIRED FOR THE BIOSYNTHESIS OF THE JRNL TITL 3 UNIVERSAL T6A TRNA MODIFICATION. JRNL REF RNA V. 24 926 2018 JRNL REFN ESSN 1469-9001 JRNL PMID 29650678 JRNL DOI 10.1261/RNA.066092.118 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 23729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1249 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1669 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : -1.43000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.716 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.286 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.426 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5322 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5355 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7190 ; 1.735 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12347 ; 1.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 666 ; 5.751 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;36.870 ;23.303 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 963 ;18.433 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;19.262 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 826 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5830 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1093 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6F89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5-8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.02 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24980 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 47.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2EQA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.72000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.72000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 236 REMARK 465 HIS A 346 REMARK 465 ASP B 223 REMARK 465 THR B 224 REMARK 465 ALA B 225 REMARK 465 LYS B 226 REMARK 465 ALA B 227 REMARK 465 PRO B 228 REMARK 465 GLY B 229 REMARK 465 MET B 230 REMARK 465 LYS B 231 REMARK 465 TYR B 232 REMARK 465 ARG B 233 REMARK 465 ALA B 234 REMARK 465 ALA B 235 REMARK 465 ALA B 236 REMARK 465 PRO B 237 REMARK 465 SER B 238 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O TYR A 335 O TYR A 335 2555 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 9 -82.91 -97.05 REMARK 500 THR A 35 -82.64 -94.33 REMARK 500 ASN A 42 109.12 -54.82 REMARK 500 ALA A 141 98.41 -160.85 REMARK 500 VAL A 207 -71.10 -93.52 REMARK 500 LYS A 220 134.36 -33.06 REMARK 500 ARG A 233 43.11 -160.51 REMARK 500 GLU A 318 66.20 -64.36 REMARK 500 THR B 35 -81.69 -95.44 REMARK 500 ALA B 141 93.84 -164.63 REMARK 500 PRO B 142 -177.33 -69.32 REMARK 500 VAL B 207 -77.66 -87.25 REMARK 500 ASP B 278 73.07 -100.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THR B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6F87 RELATED DB: PDB REMARK 900 CONTAINS THE WT SUA5 PROTEIN DBREF 6F89 A 1 340 UNP Q9UYB2 SUA5_PYRAB 1 340 DBREF 6F89 B 1 340 UNP Q9UYB2 SUA5_PYRAB 1 340 SEQADV 6F89 ALA A 234 UNP Q9UYB2 HIS 234 ENGINEERED MUTATION SEQADV 6F89 ALA A 235 UNP Q9UYB2 TYR 235 ENGINEERED MUTATION SEQADV 6F89 HIS A 341 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS A 342 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS A 343 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS A 344 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS A 345 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS A 346 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 ALA B 234 UNP Q9UYB2 HIS 234 ENGINEERED MUTATION SEQADV 6F89 ALA B 235 UNP Q9UYB2 TYR 235 ENGINEERED MUTATION SEQADV 6F89 HIS B 341 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS B 342 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS B 343 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS B 344 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS B 345 UNP Q9UYB2 EXPRESSION TAG SEQADV 6F89 HIS B 346 UNP Q9UYB2 EXPRESSION TAG SEQRES 1 A 346 MET THR ILE ILE ILE ASN VAL ARG GLU ARG ILE GLU GLU SEQRES 2 A 346 TRP LYS ILE ARG ILE ALA ALA GLY PHE ILE ARG GLU GLY SEQRES 3 A 346 LYS LEU VAL ALA PHE PRO THR GLU THR VAL TYR GLY LEU SEQRES 4 A 346 GLY ALA ASN ALA LEU ASP GLU ASN ALA VAL LYS ARG ILE SEQRES 5 A 346 PHE GLU ALA LYS GLY ARG PRO ALA ASP ASN PRO LEU ILE SEQRES 6 A 346 ILE HIS ILE ALA SER PHE GLU GLN LEU GLU VAL LEU ALA SEQRES 7 A 346 LYS GLU ILE PRO GLU GLU ALA GLU MET LEU ALA LYS ARG SEQRES 8 A 346 PHE TRP PRO GLY PRO LEU THR LEU VAL LEU PRO LYS SER SEQRES 9 A 346 GLU VAL VAL PRO ARG VAL ILE THR GLY GLY LEU ASP THR SEQRES 10 A 346 VAL ALA VAL ARG MET PRO ALA HIS GLU ILE ALA LEU LYS SEQRES 11 A 346 LEU ILE GLU LEU SER GLU ARG PRO ILE ALA ALA PRO SER SEQRES 12 A 346 ALA ASN ILE SER GLY LYS PRO SER PRO THR SER ALA HIS SEQRES 13 A 346 HIS VAL ALA GLU ASP PHE TYR GLY LYS ILE GLU CYS ILE SEQRES 14 A 346 ILE ASP GLY GLY GLU THR ARG ILE GLY VAL GLU SER THR SEQRES 15 A 346 VAL ILE ASP LEU THR GLU TRP PRO PRO VAL LEU LEU ARG SEQRES 16 A 346 PRO GLY GLY LEU PRO LEU GLU GLU ILE GLU LYS VAL ILE SEQRES 17 A 346 GLY GLU ILE ARG ILE HIS PRO ALA VAL TYR GLY LYS SER SEQRES 18 A 346 VAL ASP THR ALA LYS ALA PRO GLY MET LYS TYR ARG ALA SEQRES 19 A 346 ALA ALA PRO SER ALA GLU VAL ILE VAL VAL GLU GLY PRO SEQRES 20 A 346 ARG ASP LYS VAL ARG ARG LYS ILE GLU GLU LEU ILE ALA SEQRES 21 A 346 LYS PHE LYS GLU GLU GLY LYS LYS VAL GLY VAL ILE GLY SEQRES 22 A 346 SER GLY SER TYR ASP ALA ASP GLU VAL PHE TYR LEU GLY SEQRES 23 A 346 ASP THR VAL GLU GLU ILE ALA ARG ASN LEU PHE LYS ALA SEQRES 24 A 346 LEU ARG HIS MET ASP ARG THR GLY VAL ASP VAL ILE LEU SEQRES 25 A 346 ALA GLU GLY VAL GLU GLU LYS GLY LEU GLY LEU ALA VAL SEQRES 26 A 346 MET ASN ARG LEU ARG LYS ALA SER GLY TYR ARG ILE ILE SEQRES 27 A 346 LYS VAL HIS HIS HIS HIS HIS HIS SEQRES 1 B 346 MET THR ILE ILE ILE ASN VAL ARG GLU ARG ILE GLU GLU SEQRES 2 B 346 TRP LYS ILE ARG ILE ALA ALA GLY PHE ILE ARG GLU GLY SEQRES 3 B 346 LYS LEU VAL ALA PHE PRO THR GLU THR VAL TYR GLY LEU SEQRES 4 B 346 GLY ALA ASN ALA LEU ASP GLU ASN ALA VAL LYS ARG ILE SEQRES 5 B 346 PHE GLU ALA LYS GLY ARG PRO ALA ASP ASN PRO LEU ILE SEQRES 6 B 346 ILE HIS ILE ALA SER PHE GLU GLN LEU GLU VAL LEU ALA SEQRES 7 B 346 LYS GLU ILE PRO GLU GLU ALA GLU MET LEU ALA LYS ARG SEQRES 8 B 346 PHE TRP PRO GLY PRO LEU THR LEU VAL LEU PRO LYS SER SEQRES 9 B 346 GLU VAL VAL PRO ARG VAL ILE THR GLY GLY LEU ASP THR SEQRES 10 B 346 VAL ALA VAL ARG MET PRO ALA HIS GLU ILE ALA LEU LYS SEQRES 11 B 346 LEU ILE GLU LEU SER GLU ARG PRO ILE ALA ALA PRO SER SEQRES 12 B 346 ALA ASN ILE SER GLY LYS PRO SER PRO THR SER ALA HIS SEQRES 13 B 346 HIS VAL ALA GLU ASP PHE TYR GLY LYS ILE GLU CYS ILE SEQRES 14 B 346 ILE ASP GLY GLY GLU THR ARG ILE GLY VAL GLU SER THR SEQRES 15 B 346 VAL ILE ASP LEU THR GLU TRP PRO PRO VAL LEU LEU ARG SEQRES 16 B 346 PRO GLY GLY LEU PRO LEU GLU GLU ILE GLU LYS VAL ILE SEQRES 17 B 346 GLY GLU ILE ARG ILE HIS PRO ALA VAL TYR GLY LYS SER SEQRES 18 B 346 VAL ASP THR ALA LYS ALA PRO GLY MET LYS TYR ARG ALA SEQRES 19 B 346 ALA ALA PRO SER ALA GLU VAL ILE VAL VAL GLU GLY PRO SEQRES 20 B 346 ARG ASP LYS VAL ARG ARG LYS ILE GLU GLU LEU ILE ALA SEQRES 21 B 346 LYS PHE LYS GLU GLU GLY LYS LYS VAL GLY VAL ILE GLY SEQRES 22 B 346 SER GLY SER TYR ASP ALA ASP GLU VAL PHE TYR LEU GLY SEQRES 23 B 346 ASP THR VAL GLU GLU ILE ALA ARG ASN LEU PHE LYS ALA SEQRES 24 B 346 LEU ARG HIS MET ASP ARG THR GLY VAL ASP VAL ILE LEU SEQRES 25 B 346 ALA GLU GLY VAL GLU GLU LYS GLY LEU GLY LEU ALA VAL SEQRES 26 B 346 MET ASN ARG LEU ARG LYS ALA SER GLY TYR ARG ILE ILE SEQRES 27 B 346 LYS VAL HIS HIS HIS HIS HIS HIS HET BCT A 401 4 HET THR A 402 8 HET BCT B 401 4 HET THR B 402 8 HETNAM BCT BICARBONATE ION HETNAM THR THREONINE FORMUL 3 BCT 2(C H O3 1-) FORMUL 4 THR 2(C4 H9 N O3) FORMUL 7 HOH *135(H2 O) HELIX 1 AA1 GLU A 12 GLU A 25 1 14 HELIX 2 AA2 ASP A 45 GLY A 57 1 13 HELIX 3 AA3 SER A 70 ALA A 78 1 9 HELIX 4 AA4 PRO A 82 TRP A 93 1 12 HELIX 5 AA5 HIS A 125 GLU A 136 1 12 HELIX 6 AA6 SER A 154 TYR A 163 1 10 HELIX 7 AA7 PRO A 200 ILE A 208 1 9 HELIX 8 AA8 PRO A 215 GLY A 219 5 5 HELIX 9 AA9 PRO A 247 GLU A 265 1 19 HELIX 10 AB1 THR A 288 THR A 306 1 19 HELIX 11 AB2 LEU A 321 SER A 333 1 13 HELIX 12 AB3 GLU B 12 GLU B 25 1 14 HELIX 13 AB4 ASP B 45 GLY B 57 1 13 HELIX 14 AB5 SER B 70 ALA B 78 1 9 HELIX 15 AB6 PRO B 82 TRP B 93 1 12 HELIX 16 AB7 PRO B 108 GLY B 113 1 6 HELIX 17 AB8 HIS B 125 GLU B 136 1 12 HELIX 18 AB9 SER B 154 TYR B 163 1 10 HELIX 19 AC1 PRO B 200 ILE B 208 1 9 HELIX 20 AC2 PRO B 247 GLU B 265 1 19 HELIX 21 AC3 THR B 288 GLY B 307 1 20 HELIX 22 AC4 GLY B 320 ARG B 330 1 11 SHEET 1 AA111 ILE A 3 ASN A 6 0 SHEET 2 AA111 CYS A 168 ASP A 171 1 O ILE A 169 N ILE A 5 SHEET 3 AA111 VAL A 29 PHE A 31 1 N ALA A 30 O CYS A 168 SHEET 4 AA111 GLY A 38 ASN A 42 -1 O GLY A 40 N VAL A 29 SHEET 5 AA111 ILE A 139 ALA A 140 -1 O ALA A 140 N ALA A 41 SHEET 6 AA111 ILE A 65 HIS A 67 -1 N HIS A 67 O ILE A 139 SHEET 7 AA111 THR A 117 ARG A 121 1 O ALA A 119 N ILE A 66 SHEET 8 AA111 LEU A 97 PRO A 102 -1 N LEU A 99 O VAL A 120 SHEET 9 AA111 THR A 182 ASP A 185 1 O THR A 182 N THR A 98 SHEET 10 AA111 VAL A 192 ARG A 195 -1 O VAL A 192 N ASP A 185 SHEET 11 AA111 ARG A 212 ILE A 213 1 O ARG A 212 N LEU A 193 SHEET 1 AA2 5 GLU A 281 TYR A 284 0 SHEET 2 AA2 5 VAL A 269 GLY A 273 1 N VAL A 271 O PHE A 283 SHEET 3 AA2 5 VAL A 310 GLU A 314 1 O VAL A 310 N GLY A 270 SHEET 4 AA2 5 GLU A 240 GLU A 245 1 N GLU A 240 O ILE A 311 SHEET 5 AA2 5 ILE A 337 LYS A 339 1 O ILE A 338 N GLU A 245 SHEET 1 AA311 ILE B 3 ASN B 6 0 SHEET 2 AA311 CYS B 168 ASP B 171 1 O ILE B 169 N ILE B 5 SHEET 3 AA311 VAL B 29 PHE B 31 1 N ALA B 30 O CYS B 168 SHEET 4 AA311 GLY B 38 ASN B 42 -1 O GLY B 38 N PHE B 31 SHEET 5 AA311 ILE B 139 ALA B 140 -1 O ALA B 140 N ALA B 41 SHEET 6 AA311 ILE B 65 HIS B 67 -1 N HIS B 67 O ILE B 139 SHEET 7 AA311 THR B 117 ARG B 121 1 O ALA B 119 N ILE B 66 SHEET 8 AA311 LEU B 97 PRO B 102 -1 N LEU B 101 O VAL B 118 SHEET 9 AA311 THR B 182 ASP B 185 1 O THR B 182 N THR B 98 SHEET 10 AA311 VAL B 192 ARG B 195 -1 O VAL B 192 N ASP B 185 SHEET 11 AA311 ARG B 212 ILE B 213 1 O ARG B 212 N LEU B 193 SHEET 1 AA4 5 GLU B 281 TYR B 284 0 SHEET 2 AA4 5 VAL B 269 GLY B 273 1 N VAL B 271 O GLU B 281 SHEET 3 AA4 5 VAL B 310 GLU B 314 1 O VAL B 310 N GLY B 270 SHEET 4 AA4 5 GLU B 240 GLU B 245 1 N GLU B 240 O ILE B 311 SHEET 5 AA4 5 TYR B 335 LYS B 339 1 O ILE B 338 N VAL B 243 CISPEP 1 TRP A 93 PRO A 94 0 -7.41 CISPEP 2 TRP A 189 PRO A 190 0 -6.74 CISPEP 3 TRP B 93 PRO B 94 0 3.67 CISPEP 4 TRP B 189 PRO B 190 0 -0.18 SITE 1 AC1 6 PRO A 142 SER A 143 ARG A 195 PRO A 228 SITE 2 AC1 6 THR A 402 HOH A 503 SITE 1 AC2 10 THR A 35 GLY A 38 ILE A 65 HIS A 67 SITE 2 AC2 10 ARG A 121 ALA A 141 GLU A 180 SER A 181 SITE 3 AC2 10 ARG A 195 BCT A 401 SITE 1 AC3 3 SER B 143 ARG B 195 THR B 402 SITE 1 AC4 10 THR B 35 VAL B 36 GLY B 38 ILE B 65 SITE 2 AC4 10 HIS B 67 ARG B 121 ALA B 141 SER B 181 SITE 3 AC4 10 ARG B 195 BCT B 401 CRYST1 177.440 125.270 47.940 90.00 91.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005636 0.000000 0.000181 0.00000 SCALE2 0.000000 0.007983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020870 0.00000