data_6F8E # _entry.id 6F8E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6F8E pdb_00006f8e 10.2210/pdb6f8e/pdb WWPDB D_1200007841 ? ? BMRB 34216 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'PH domain from TgAPH' _pdbx_database_related.db_id 34216 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6F8E _pdbx_database_status.recvd_initial_deposition_date 2017-12-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Darvill, N.' 1 ? 'Liu, B.' 2 ? 'Matthews, S.' 3 ? 'Soldati-Favre, D.' 4 ? 'Rouse, S.' 5 ? 'Benjamin, S.' 6 ? 'Blake, T.' 7 ? 'Dubois, D.J.' 8 ? 'Hammoudi, P.M.' 9 ? 'Pino, P.' 10 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 1878-4186 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 1059 _citation.page_last 1071.e6 _citation.title 'Structural Basis of Phosphatidic Acid Sensing by APH in Apicomplexan Parasites.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2018.05.001 _citation.pdbx_database_id_PubMed 29910186 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Darvill, N.' 1 ? primary 'Dubois, D.J.' 2 ? primary 'Rouse, S.L.' 3 ? primary 'Hammoudi, P.M.' 4 ? primary 'Blake, T.' 5 ? primary 'Benjamin, S.' 6 ? primary 'Liu, B.' 7 ? primary 'Soldati-Favre, D.' 8 ? primary 'Matthews, S.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Pleckstrin homology domain' _entity.formula_weight 13759.891 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SASDIRMKKVMQYRRALTKVVKLKTHLFSETVKVTCSKDGEEVQWFKGKSTAGAQDRKKPSGGFPVDKITSVKSQADNTK VLVITVNNPQPTTYNFTFKSPGERESWQEQIQSLMKFMSMK ; _entity_poly.pdbx_seq_one_letter_code_can ;SASDIRMKKVMQYRRALTKVVKLKTHLFSETVKVTCSKDGEEVQWFKGKSTAGAQDRKKPSGGFPVDKITSVKSQADNTK VLVITVNNPQPTTYNFTFKSPGERESWQEQIQSLMKFMSMK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 SER n 1 4 ASP n 1 5 ILE n 1 6 ARG n 1 7 MET n 1 8 LYS n 1 9 LYS n 1 10 VAL n 1 11 MET n 1 12 GLN n 1 13 TYR n 1 14 ARG n 1 15 ARG n 1 16 ALA n 1 17 LEU n 1 18 THR n 1 19 LYS n 1 20 VAL n 1 21 VAL n 1 22 LYS n 1 23 LEU n 1 24 LYS n 1 25 THR n 1 26 HIS n 1 27 LEU n 1 28 PHE n 1 29 SER n 1 30 GLU n 1 31 THR n 1 32 VAL n 1 33 LYS n 1 34 VAL n 1 35 THR n 1 36 CYS n 1 37 SER n 1 38 LYS n 1 39 ASP n 1 40 GLY n 1 41 GLU n 1 42 GLU n 1 43 VAL n 1 44 GLN n 1 45 TRP n 1 46 PHE n 1 47 LYS n 1 48 GLY n 1 49 LYS n 1 50 SER n 1 51 THR n 1 52 ALA n 1 53 GLY n 1 54 ALA n 1 55 GLN n 1 56 ASP n 1 57 ARG n 1 58 LYS n 1 59 LYS n 1 60 PRO n 1 61 SER n 1 62 GLY n 1 63 GLY n 1 64 PHE n 1 65 PRO n 1 66 VAL n 1 67 ASP n 1 68 LYS n 1 69 ILE n 1 70 THR n 1 71 SER n 1 72 VAL n 1 73 LYS n 1 74 SER n 1 75 GLN n 1 76 ALA n 1 77 ASP n 1 78 ASN n 1 79 THR n 1 80 LYS n 1 81 VAL n 1 82 LEU n 1 83 VAL n 1 84 ILE n 1 85 THR n 1 86 VAL n 1 87 ASN n 1 88 ASN n 1 89 PRO n 1 90 GLN n 1 91 PRO n 1 92 THR n 1 93 THR n 1 94 TYR n 1 95 ASN n 1 96 PHE n 1 97 THR n 1 98 PHE n 1 99 LYS n 1 100 SER n 1 101 PRO n 1 102 GLY n 1 103 GLU n 1 104 ARG n 1 105 GLU n 1 106 SER n 1 107 TRP n 1 108 GLN n 1 109 GLU n 1 110 GLN n 1 111 ILE n 1 112 GLN n 1 113 SER n 1 114 LEU n 1 115 MET n 1 116 LYS n 1 117 PHE n 1 118 MET n 1 119 SER n 1 120 MET n 1 121 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 121 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TGME49_249970 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 50611 / Me49' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Toxoplasma gondii (strain ATCC 50611 / Me49)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 508771 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A125YY72_TOXGM _struct_ref.pdbx_db_accession A0A125YY72 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SASDIRMKKVMQYRRALTKVVKLKTHLFSETVKVTCSKDGEEVQWFKGKSTAGAQDRKKPSGGFPVDKITSVKSQADNTK VLVITVNNPQPTTYNFTFKSPGERESWQEQIQSLMKFMSMK ; _struct_ref.pdbx_align_begin 109 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6F8E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 121 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A125YY72 _struct_ref_seq.db_align_beg 109 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 229 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 11 _struct_ref_seq.pdbx_auth_seq_align_end 131 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '3D CBCA(CO)NH' 1 isotropic 3 1 1 '3D HNCACB' 1 isotropic 4 1 1 '3D HNCO' 1 isotropic 5 1 1 '3D HN(CO)CA' 1 isotropic 6 1 1 '3D HBHA(CO)NH' 1 isotropic 7 1 1 '3D C(CO)NH' 1 isotropic 8 1 1 '3D H(CCO)NH' 1 isotropic 9 1 1 '3D 1H-15N NOESY' 1 isotropic 10 1 1 '3D 1H-13C NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength '150 NaCl' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 3D_NMR_conditions _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '730 uM [U-100% 15N]; [U-100% 13C] C-terminal PH domain from TgAPH, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 15N_13C_TgAPH _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6F8E _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6F8E _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6F8E _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria medoid # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS ? 'Brunger A. T. et.al.' 2 'structure calculation' ARIA ? ;Linge, O'Donoghue and Nilges ; 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 'peak picking' NMRView ? 'Johnson, One Moon Scientific' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6F8E _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6F8E _struct.title 'PH domain from TgAPH' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6F8E _struct_keywords.text 'PH domain, phosphatidic acid binding, membrane association, LIPID BINDING PROTEIN' _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 1 ? THR A 18 ? SER A 11 THR A 28 1 ? 18 HELX_P HELX_P2 AA2 GLY A 102 ? MET A 120 ? GLY A 112 MET A 130 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 63 ? PRO A 65 ? GLY A 73 PRO A 75 AA1 2 GLU A 42 ? LYS A 47 ? GLU A 52 LYS A 57 AA1 3 SER A 29 ? CYS A 36 ? SER A 39 CYS A 46 AA1 4 LYS A 19 ? LYS A 24 ? LYS A 29 LYS A 34 AA1 5 PHE A 96 ? THR A 97 ? PHE A 106 THR A 107 AA2 1 ILE A 69 ? SER A 74 ? ILE A 79 SER A 84 AA2 2 LEU A 82 ? VAL A 86 ? LEU A 92 VAL A 96 AA2 3 THR A 92 ? TYR A 94 ? THR A 102 TYR A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O PHE A 64 ? O PHE A 74 N VAL A 43 ? N VAL A 53 AA1 2 3 O PHE A 46 ? O PHE A 56 N LYS A 33 ? N LYS A 43 AA1 3 4 O VAL A 32 ? O VAL A 42 N VAL A 21 ? N VAL A 31 AA1 4 5 N LYS A 22 ? N LYS A 32 O THR A 97 ? O THR A 107 AA2 1 2 N SER A 71 ? N SER A 81 O THR A 85 ? O THR A 95 AA2 2 3 N ILE A 84 ? N ILE A 94 O TYR A 94 ? O TYR A 104 # _atom_sites.entry_id 6F8E _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 11 11 SER SER A . n A 1 2 ALA 2 12 12 ALA ALA A . n A 1 3 SER 3 13 13 SER SER A . n A 1 4 ASP 4 14 14 ASP ASP A . n A 1 5 ILE 5 15 15 ILE ILE A . n A 1 6 ARG 6 16 16 ARG ARG A . n A 1 7 MET 7 17 17 MET MET A . n A 1 8 LYS 8 18 18 LYS LYS A . n A 1 9 LYS 9 19 19 LYS LYS A . n A 1 10 VAL 10 20 20 VAL VAL A . n A 1 11 MET 11 21 21 MET MET A . n A 1 12 GLN 12 22 22 GLN GLN A . n A 1 13 TYR 13 23 23 TYR TYR A . n A 1 14 ARG 14 24 24 ARG ARG A . n A 1 15 ARG 15 25 25 ARG ARG A . n A 1 16 ALA 16 26 26 ALA ALA A . n A 1 17 LEU 17 27 27 LEU LEU A . n A 1 18 THR 18 28 28 THR THR A . n A 1 19 LYS 19 29 29 LYS LYS A . n A 1 20 VAL 20 30 30 VAL VAL A . n A 1 21 VAL 21 31 31 VAL VAL A . n A 1 22 LYS 22 32 32 LYS LYS A . n A 1 23 LEU 23 33 33 LEU LEU A . n A 1 24 LYS 24 34 34 LYS LYS A . n A 1 25 THR 25 35 35 THR THR A . n A 1 26 HIS 26 36 36 HIS HIS A . n A 1 27 LEU 27 37 37 LEU LEU A . n A 1 28 PHE 28 38 38 PHE PHE A . n A 1 29 SER 29 39 39 SER SER A . n A 1 30 GLU 30 40 40 GLU GLU A . n A 1 31 THR 31 41 41 THR THR A . n A 1 32 VAL 32 42 42 VAL VAL A . n A 1 33 LYS 33 43 43 LYS LYS A . n A 1 34 VAL 34 44 44 VAL VAL A . n A 1 35 THR 35 45 45 THR THR A . n A 1 36 CYS 36 46 46 CYS CYS A . n A 1 37 SER 37 47 47 SER SER A . n A 1 38 LYS 38 48 48 LYS LYS A . n A 1 39 ASP 39 49 49 ASP ASP A . n A 1 40 GLY 40 50 50 GLY GLY A . n A 1 41 GLU 41 51 51 GLU GLU A . n A 1 42 GLU 42 52 52 GLU GLU A . n A 1 43 VAL 43 53 53 VAL VAL A . n A 1 44 GLN 44 54 54 GLN GLN A . n A 1 45 TRP 45 55 55 TRP TRP A . n A 1 46 PHE 46 56 56 PHE PHE A . n A 1 47 LYS 47 57 57 LYS LYS A . n A 1 48 GLY 48 58 58 GLY GLY A . n A 1 49 LYS 49 59 59 LYS LYS A . n A 1 50 SER 50 60 60 SER SER A . n A 1 51 THR 51 61 61 THR THR A . n A 1 52 ALA 52 62 62 ALA ALA A . n A 1 53 GLY 53 63 63 GLY GLY A . n A 1 54 ALA 54 64 64 ALA ALA A . n A 1 55 GLN 55 65 65 GLN GLN A . n A 1 56 ASP 56 66 66 ASP ASP A . n A 1 57 ARG 57 67 67 ARG ARG A . n A 1 58 LYS 58 68 68 LYS LYS A . n A 1 59 LYS 59 69 69 LYS LYS A . n A 1 60 PRO 60 70 70 PRO PRO A . n A 1 61 SER 61 71 71 SER SER A . n A 1 62 GLY 62 72 72 GLY GLY A . n A 1 63 GLY 63 73 73 GLY GLY A . n A 1 64 PHE 64 74 74 PHE PHE A . n A 1 65 PRO 65 75 75 PRO PRO A . n A 1 66 VAL 66 76 76 VAL VAL A . n A 1 67 ASP 67 77 77 ASP ASP A . n A 1 68 LYS 68 78 78 LYS LYS A . n A 1 69 ILE 69 79 79 ILE ILE A . n A 1 70 THR 70 80 80 THR THR A . n A 1 71 SER 71 81 81 SER SER A . n A 1 72 VAL 72 82 82 VAL VAL A . n A 1 73 LYS 73 83 83 LYS LYS A . n A 1 74 SER 74 84 84 SER SER A . n A 1 75 GLN 75 85 85 GLN GLN A . n A 1 76 ALA 76 86 86 ALA ALA A . n A 1 77 ASP 77 87 87 ASP ASP A . n A 1 78 ASN 78 88 88 ASN ASN A . n A 1 79 THR 79 89 89 THR THR A . n A 1 80 LYS 80 90 90 LYS LYS A . n A 1 81 VAL 81 91 91 VAL VAL A . n A 1 82 LEU 82 92 92 LEU LEU A . n A 1 83 VAL 83 93 93 VAL VAL A . n A 1 84 ILE 84 94 94 ILE ILE A . n A 1 85 THR 85 95 95 THR THR A . n A 1 86 VAL 86 96 96 VAL VAL A . n A 1 87 ASN 87 97 97 ASN ASN A . n A 1 88 ASN 88 98 98 ASN ASN A . n A 1 89 PRO 89 99 99 PRO PRO A . n A 1 90 GLN 90 100 100 GLN GLN A . n A 1 91 PRO 91 101 101 PRO PRO A . n A 1 92 THR 92 102 102 THR THR A . n A 1 93 THR 93 103 103 THR THR A . n A 1 94 TYR 94 104 104 TYR TYR A . n A 1 95 ASN 95 105 105 ASN ASN A . n A 1 96 PHE 96 106 106 PHE PHE A . n A 1 97 THR 97 107 107 THR THR A . n A 1 98 PHE 98 108 108 PHE PHE A . n A 1 99 LYS 99 109 109 LYS LYS A . n A 1 100 SER 100 110 110 SER SER A . n A 1 101 PRO 101 111 111 PRO PRO A . n A 1 102 GLY 102 112 112 GLY GLY A . n A 1 103 GLU 103 113 113 GLU GLU A . n A 1 104 ARG 104 114 114 ARG ARG A . n A 1 105 GLU 105 115 115 GLU GLU A . n A 1 106 SER 106 116 116 SER SER A . n A 1 107 TRP 107 117 117 TRP TRP A . n A 1 108 GLN 108 118 118 GLN GLN A . n A 1 109 GLU 109 119 119 GLU GLU A . n A 1 110 GLN 110 120 120 GLN GLN A . n A 1 111 ILE 111 121 121 ILE ILE A . n A 1 112 GLN 112 122 122 GLN GLN A . n A 1 113 SER 113 123 123 SER SER A . n A 1 114 LEU 114 124 124 LEU LEU A . n A 1 115 MET 115 125 125 MET MET A . n A 1 116 LYS 116 126 126 LYS LYS A . n A 1 117 PHE 117 127 127 PHE PHE A . n A 1 118 MET 118 128 128 MET MET A . n A 1 119 SER 119 129 129 SER SER A . n A 1 120 MET 120 130 130 MET MET A . n A 1 121 LYS 121 131 131 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-30 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'C-terminal PH domain from TgAPH' _pdbx_nmr_exptl_sample.concentration 730 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units uM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 15N]; [U-100% 13C]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ1 A LYS 48 ? ? OD2 A ASP 66 ? ? 1.59 2 1 HZ2 A LYS 29 ? ? OE2 A GLU 113 ? ? 1.60 3 4 O A VAL 31 ? ? H A VAL 42 ? ? 1.57 4 4 O A ARG 24 ? ? HG1 A THR 28 ? ? 1.59 5 5 OD1 A ASP 77 ? ? HG A SER 129 ? ? 1.59 6 8 HZ1 A LYS 29 ? ? OE2 A GLU 113 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 35 ? ? -169.87 -168.26 2 1 PHE A 38 ? ? 177.72 -178.84 3 1 THR A 45 ? ? -175.14 -172.01 4 1 SER A 47 ? ? -66.40 -179.20 5 1 ALA A 62 ? ? -52.38 107.15 6 1 GLN A 65 ? ? 71.26 -16.11 7 1 ASN A 88 ? ? 33.28 40.66 8 1 ASN A 98 ? ? 95.21 -64.76 9 1 PRO A 111 ? ? -68.81 3.72 10 2 THR A 35 ? ? -168.98 -168.15 11 2 PHE A 38 ? ? 175.15 -171.04 12 2 THR A 45 ? ? -177.01 -172.55 13 2 LYS A 59 ? ? -144.02 50.52 14 2 GLN A 65 ? ? 70.30 -42.96 15 2 ASN A 88 ? ? 33.03 44.53 16 2 ASN A 98 ? ? 165.34 -56.42 17 2 PRO A 99 ? ? -58.90 173.93 18 2 PRO A 111 ? ? -62.49 4.84 19 2 MET A 130 ? ? -69.18 93.38 20 3 THR A 35 ? ? -169.19 -165.84 21 3 PHE A 38 ? ? -179.24 -174.88 22 3 THR A 45 ? ? -174.05 -179.88 23 3 GLN A 65 ? ? 71.71 -49.06 24 3 ASN A 98 ? ? 94.18 -65.74 25 3 PRO A 99 ? ? -58.73 171.65 26 3 PRO A 111 ? ? -67.20 5.94 27 3 SER A 129 ? ? -91.02 32.20 28 4 PHE A 38 ? ? 178.64 178.19 29 4 THR A 45 ? ? 177.21 -171.43 30 4 ALA A 64 ? ? -98.02 58.75 31 4 GLN A 65 ? ? 72.62 -31.24 32 4 GLN A 85 ? ? -61.72 -174.39 33 4 ASN A 88 ? ? 32.75 43.52 34 4 ASN A 98 ? ? 168.22 -54.46 35 5 THR A 35 ? ? -168.77 -166.89 36 5 PHE A 38 ? ? 174.81 -178.49 37 5 THR A 45 ? ? -176.36 -172.02 38 5 LYS A 59 ? ? -82.05 -72.59 39 5 GLN A 65 ? ? 71.44 -39.26 40 5 ARG A 67 ? ? 68.31 60.98 41 5 GLN A 85 ? ? -60.29 -176.02 42 5 ASN A 88 ? ? 37.21 51.69 43 5 ASN A 98 ? ? 163.06 -55.31 44 5 PRO A 99 ? ? -59.07 171.00 45 6 THR A 35 ? ? -169.29 -165.81 46 6 PHE A 38 ? ? -179.83 -173.23 47 6 THR A 45 ? ? -176.53 -169.72 48 6 GLN A 65 ? ? 71.90 -43.63 49 6 LYS A 68 ? ? -100.85 53.39 50 6 LYS A 69 ? ? -152.72 74.97 51 6 GLN A 85 ? ? -58.86 177.35 52 6 ASN A 88 ? ? 37.50 55.37 53 6 ASN A 98 ? ? 100.71 -58.34 54 6 PRO A 99 ? ? -58.69 170.85 55 7 THR A 35 ? ? -169.45 -166.59 56 7 PHE A 38 ? ? 178.62 -175.99 57 7 THR A 45 ? ? -174.17 -172.22 58 7 LYS A 59 ? ? -142.72 -54.51 59 7 SER A 60 ? ? -164.52 103.95 60 7 GLN A 65 ? ? 72.11 -40.98 61 7 ASN A 88 ? ? 37.97 53.52 62 7 THR A 89 ? ? -47.77 -71.05 63 7 ASN A 98 ? ? 164.87 -52.62 64 8 THR A 35 ? ? -169.04 -169.43 65 8 PHE A 38 ? ? 170.54 -169.69 66 8 THR A 45 ? ? -179.53 -173.04 67 8 LYS A 59 ? ? -95.69 55.23 68 8 ALA A 62 ? ? -81.45 49.57 69 8 GLN A 65 ? ? 71.44 -51.53 70 8 ARG A 67 ? ? 57.46 77.81 71 8 GLN A 85 ? ? -56.97 179.58 72 8 ASN A 88 ? ? 30.15 42.38 73 8 ASN A 98 ? ? 102.33 -59.80 74 8 PRO A 99 ? ? -58.50 172.37 75 8 MET A 130 ? ? -69.45 97.96 76 9 THR A 35 ? ? -169.14 -168.29 77 9 PHE A 38 ? ? 177.88 -175.42 78 9 THR A 45 ? ? -171.38 -171.02 79 9 GLN A 65 ? ? 71.20 -30.55 80 9 GLN A 85 ? ? -61.71 -173.82 81 9 ASN A 88 ? ? 34.65 39.37 82 9 ASN A 98 ? ? 165.10 -55.23 83 10 PHE A 38 ? ? -178.46 -175.38 84 10 THR A 45 ? ? -178.97 -169.39 85 10 GLN A 65 ? ? 73.06 -38.08 86 10 ARG A 67 ? ? 69.73 65.21 87 10 ASN A 88 ? ? 30.41 41.59 88 10 ASN A 98 ? ? 100.59 -61.28 # _pdbx_audit_support.funding_organization 'Wellcome Trust' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 105394/Z/14/Z _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'Purifies as a single monomer under reducing conditions' #