HEADER TRANSFERASE 13-DEC-17 6F93 TITLE HELICOBACTER PYLORI SERINE HYDROXYMETHYL TRANSFERASE IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SERINE METHYLASE; COMPND 5 EC: 2.1.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 5 ORGANISM_TAXID: 85962; SOURCE 6 STRAIN: ATCC 700392 / 26695; SOURCE 7 GENE: GLYA, HP_0183; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: SG 13009; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS SHMT, METHYLTRANSFERASE, H. PYLORI FOLATE-SENSITIVE FRAGILE SITES, KEYWDS 2 FOLATE CYCLE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SODOLESCU,C.DIAN,L.TERRADOT,L.BOUZHIR-SIMA,R.LESTINI,H.MYLLYKALLIO, AUTHOR 2 S.SKOULOUBRIS,U.LIEBL REVDAT 2 17-JAN-24 6F93 1 REMARK REVDAT 1 26-DEC-18 6F93 0 JRNL AUTH A.SODOLESCU,C.DIAN,L.TERRADOT,L.BOUZHIR-SIMA,R.LESTINI, JRNL AUTH 2 H.MYLLYKALLIO,S.SKOULOUBRIS,U.LIEBL JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHT INTO SERINE JRNL TITL 2 HYDROXYMETHYLTRANSFERASE FROM HELICOBACTER PYLORI. JRNL REF PLOS ONE V. 13 08850 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 30550583 JRNL DOI 10.1371/JOURNAL.PONE.0208850 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 20572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8510 - 5.3540 0.98 2923 175 0.1726 0.2010 REMARK 3 2 5.3540 - 4.2505 0.99 2842 144 0.1618 0.1794 REMARK 3 3 4.2505 - 3.7135 0.99 2772 151 0.1735 0.2039 REMARK 3 4 3.7135 - 3.3741 0.99 2769 137 0.1918 0.2572 REMARK 3 5 3.3741 - 3.1323 0.98 2770 144 0.2346 0.2978 REMARK 3 6 3.1323 - 2.9476 0.98 2745 140 0.2400 0.3397 REMARK 3 7 2.9476 - 2.8000 0.98 2710 150 0.2930 0.3601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6009 REMARK 3 ANGLE : 0.795 8132 REMARK 3 CHIRALITY : 0.047 921 REMARK 3 PLANARITY : 0.006 1060 REMARK 3 DIHEDRAL : 19.317 3596 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) OR REMARK 200 SI(311) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADXV REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.851 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11700 REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54600 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DKJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M SODIUM ACETATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.67450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.23800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.77400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.23800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.67450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.77400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 TYR A 3 REMARK 465 ALA A 53 REMARK 465 GLU A 54 REMARK 465 GLY A 55 REMARK 465 TYR A 56 REMARK 465 PRO A 57 REMARK 465 ASN A 58 REMARK 465 LYS A 59 REMARK 465 ARG A 60 REMARK 465 TYR A 61 REMARK 465 TYR A 62 REMARK 465 GLY A 63 REMARK 465 GLY A 64 REMARK 465 CYS A 65 REMARK 465 GLU A 66 REMARK 465 LEU A 124 REMARK 465 THR A 125 REMARK 465 HIS A 126 REMARK 465 GLY A 127 REMARK 465 ALA A 128 REMARK 465 LYS A 129 REMARK 465 VAL A 130 REMARK 465 HIS A 412 REMARK 465 GLN A 413 REMARK 465 PRO A 414 REMARK 465 ILE A 415 REMARK 465 PHE A 416 REMARK 465 ARG A 417 REMARK 465 SER A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 54 REMARK 465 GLY B 55 REMARK 465 TYR B 56 REMARK 465 PRO B 57 REMARK 465 ASN B 58 REMARK 465 LYS B 59 REMARK 465 ARG B 60 REMARK 465 TYR B 61 REMARK 465 TYR B 62 REMARK 465 GLY B 63 REMARK 465 GLY B 64 REMARK 465 CYS B 65 REMARK 465 GLU B 66 REMARK 465 VAL B 67 REMARK 465 CYS B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 HIS B 123 REMARK 465 LEU B 124 REMARK 465 THR B 125 REMARK 465 HIS B 126 REMARK 465 GLY B 127 REMARK 465 ALA B 128 REMARK 465 LYS B 129 REMARK 465 VAL B 130 REMARK 465 SER B 131 REMARK 465 LEU B 132 REMARK 465 THR B 133 REMARK 465 GLY B 134 REMARK 465 ARG B 417 REMARK 465 SER B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 VAL A 67 CG1 CG2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 SER A 131 OG REMARK 470 LYS A 157 CD CE NZ REMARK 470 LYS A 163 CD CE NZ REMARK 470 LYS A 182 CD CE NZ REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 PHE A 252 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 256 CG CD OE1 NE2 REMARK 470 GLN B 7 CG CD OE1 NE2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 TYR B 110 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 118 CG CD1 CD2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 HIS B 136 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 LYS B 182 CD CE NZ REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 ILE B 251 CG1 CG2 CD1 REMARK 470 PRO B 253 CG CD REMARK 470 THR B 255 OG1 CG2 REMARK 470 GLN B 256 CG CD OE1 NE2 REMARK 470 LYS B 372 CG CD CE NZ REMARK 470 GLU B 375 CD OE1 OE2 REMARK 470 LYS B 380 CD CE NZ REMARK 470 GLU B 399 CG CD OE1 OE2 REMARK 470 LYS B 402 CG CD CE NZ REMARK 470 HIS B 412 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 276 O HOH B 501 2.10 REMARK 500 NZ LYS A 272 O THR B 8 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 315 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 84 67.15 60.58 REMARK 500 HIS A 136 40.22 -161.44 REMARK 500 HIS A 225 -145.86 -92.29 REMARK 500 LYS A 226 -121.85 60.88 REMARK 500 PRO A 231 -179.82 -68.53 REMARK 500 PHE A 252 -94.82 29.34 REMARK 500 GLN A 256 136.50 -172.74 REMARK 500 ASN A 311 -158.99 -117.54 REMARK 500 ASP A 320 50.58 -115.80 REMARK 500 VAL A 339 -155.98 -120.54 REMARK 500 THR A 354 175.40 61.64 REMARK 500 ASP B 9 81.88 -157.05 REMARK 500 HIS B 136 4.92 -68.56 REMARK 500 ASN B 145 -169.65 -76.95 REMARK 500 HIS B 225 -145.94 -106.76 REMARK 500 LYS B 226 -119.71 53.54 REMARK 500 SER B 350 179.55 -59.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 310 ASN B 311 -145.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 6F93 A 1 416 UNP P56089 GLYA_HELPY 1 416 DBREF 6F93 B 1 416 UNP P56089 GLYA_HELPY 1 416 SEQADV 6F93 ARG A 417 UNP P56089 EXPRESSION TAG SEQADV 6F93 SER A 418 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS A 419 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS A 420 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS A 421 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS A 422 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS A 423 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS A 424 UNP P56089 EXPRESSION TAG SEQADV 6F93 ARG B 417 UNP P56089 EXPRESSION TAG SEQADV 6F93 SER B 418 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS B 419 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS B 420 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS B 421 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS B 422 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS B 423 UNP P56089 EXPRESSION TAG SEQADV 6F93 HIS B 424 UNP P56089 EXPRESSION TAG SEQRES 1 A 424 MET ALA TYR PHE LEU GLU GLN THR ASP SER GLU ILE PHE SEQRES 2 A 424 GLU LEU ILE PHE GLU GLU TYR LYS ARG GLN ASN GLU HIS SEQRES 3 A 424 LEU GLU MET ILE ALA SER GLU ASN TYR THR PHE ALA SER SEQRES 4 A 424 VAL MET GLU ALA MET GLY SER VAL LEU THR ASN LYS TYR SEQRES 5 A 424 ALA GLU GLY TYR PRO ASN LYS ARG TYR TYR GLY GLY CYS SEQRES 6 A 424 GLU VAL VAL ASP LYS ILE GLU SER LEU ALA ILE GLU ARG SEQRES 7 A 424 ALA LYS LYS LEU PHE ASN CYS GLN PHE ALA ASN VAL GLN SEQRES 8 A 424 ALA HIS SER GLY SER GLN ALA ASN ASN ALA VAL TYR HIS SEQRES 9 A 424 ALA LEU LEU LYS PRO TYR ASP LYS ILE LEU GLY MET ASP SEQRES 10 A 424 LEU SER CYS GLY GLY HIS LEU THR HIS GLY ALA LYS VAL SEQRES 11 A 424 SER LEU THR GLY LYS HIS TYR GLN SER PHE SER TYR GLY SEQRES 12 A 424 VAL ASN LEU ASP GLY TYR ILE ASP TYR GLU GLU ALA LEU SEQRES 13 A 424 LYS ILE ALA GLN SER VAL LYS PRO GLU ILE ILE VAL CYS SEQRES 14 A 424 GLY PHE SER ALA TYR PRO ARG GLU ILE ASP PHE LYS LYS SEQRES 15 A 424 PHE ARG GLU ILE ALA ASP GLU VAL GLY ALA LEU LEU LEU SEQRES 16 A 424 GLY ASP ILE ALA HIS VAL ALA GLY LEU VAL VAL THR GLY SEQRES 17 A 424 GLU HIS ALA HIS PRO PHE PRO HIS CYS HIS VAL VAL SER SEQRES 18 A 424 SER THR THR HIS LYS THR LEU ARG GLY PRO ARG GLY GLY SEQRES 19 A 424 ILE ILE LEU THR ASN ASP GLU GLU ILE ALA ALA LYS ILE SEQRES 20 A 424 ASP LYS ALA ILE PHE PRO GLY THR GLN GLY GLY PRO LEU SEQRES 21 A 424 MET HIS VAL ILE ALA ALA LYS ALA VAL GLY PHE LYS GLU SEQRES 22 A 424 ASN LEU LYS PRO GLU PHE LYS ALA TYR ALA GLN LEU VAL SEQRES 23 A 424 LYS SER ASN MET GLN VAL LEU ALA LYS ALA LEU LYS GLU SEQRES 24 A 424 LYS ASN HIS LYS LEU VAL SER GLY GLY THR SER ASN HIS SEQRES 25 A 424 LEU LEU LEU MET ASP PHE LEU ASP LYS PRO TYR SER GLY SEQRES 26 A 424 LYS ASP ALA ASP ILE ALA LEU GLY ASN ALA GLY ILE THR SEQRES 27 A 424 VAL ASN LYS ASN THR ILE PRO GLY GLU THR ARG SER PRO SEQRES 28 A 424 PHE VAL THR SER GLY ILE ARG ILE GLY SER ALA ALA LEU SEQRES 29 A 424 SER ALA ARG GLY MET GLY ALA LYS GLU PHE GLU ILE ILE SEQRES 30 A 424 GLY ASN LYS ILE SER ASP ILE LEU ASN ASP ILE ASN ASN SEQRES 31 A 424 VAL SER LEU GLN LEU HIS VAL LYS GLU GLU LEU LYS ALA SEQRES 32 A 424 MET VAL ASN GLN PHE PRO VAL TYR HIS GLN PRO ILE PHE SEQRES 33 A 424 ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 424 MET ALA TYR PHE LEU GLU GLN THR ASP SER GLU ILE PHE SEQRES 2 B 424 GLU LEU ILE PHE GLU GLU TYR LYS ARG GLN ASN GLU HIS SEQRES 3 B 424 LEU GLU MET ILE ALA SER GLU ASN TYR THR PHE ALA SER SEQRES 4 B 424 VAL MET GLU ALA MET GLY SER VAL LEU THR ASN LYS TYR SEQRES 5 B 424 ALA GLU GLY TYR PRO ASN LYS ARG TYR TYR GLY GLY CYS SEQRES 6 B 424 GLU VAL VAL ASP LYS ILE GLU SER LEU ALA ILE GLU ARG SEQRES 7 B 424 ALA LYS LYS LEU PHE ASN CYS GLN PHE ALA ASN VAL GLN SEQRES 8 B 424 ALA HIS SER GLY SER GLN ALA ASN ASN ALA VAL TYR HIS SEQRES 9 B 424 ALA LEU LEU LYS PRO TYR ASP LYS ILE LEU GLY MET ASP SEQRES 10 B 424 LEU SER CYS GLY GLY HIS LEU THR HIS GLY ALA LYS VAL SEQRES 11 B 424 SER LEU THR GLY LYS HIS TYR GLN SER PHE SER TYR GLY SEQRES 12 B 424 VAL ASN LEU ASP GLY TYR ILE ASP TYR GLU GLU ALA LEU SEQRES 13 B 424 LYS ILE ALA GLN SER VAL LYS PRO GLU ILE ILE VAL CYS SEQRES 14 B 424 GLY PHE SER ALA TYR PRO ARG GLU ILE ASP PHE LYS LYS SEQRES 15 B 424 PHE ARG GLU ILE ALA ASP GLU VAL GLY ALA LEU LEU LEU SEQRES 16 B 424 GLY ASP ILE ALA HIS VAL ALA GLY LEU VAL VAL THR GLY SEQRES 17 B 424 GLU HIS ALA HIS PRO PHE PRO HIS CYS HIS VAL VAL SER SEQRES 18 B 424 SER THR THR HIS LYS THR LEU ARG GLY PRO ARG GLY GLY SEQRES 19 B 424 ILE ILE LEU THR ASN ASP GLU GLU ILE ALA ALA LYS ILE SEQRES 20 B 424 ASP LYS ALA ILE PHE PRO GLY THR GLN GLY GLY PRO LEU SEQRES 21 B 424 MET HIS VAL ILE ALA ALA LYS ALA VAL GLY PHE LYS GLU SEQRES 22 B 424 ASN LEU LYS PRO GLU PHE LYS ALA TYR ALA GLN LEU VAL SEQRES 23 B 424 LYS SER ASN MET GLN VAL LEU ALA LYS ALA LEU LYS GLU SEQRES 24 B 424 LYS ASN HIS LYS LEU VAL SER GLY GLY THR SER ASN HIS SEQRES 25 B 424 LEU LEU LEU MET ASP PHE LEU ASP LYS PRO TYR SER GLY SEQRES 26 B 424 LYS ASP ALA ASP ILE ALA LEU GLY ASN ALA GLY ILE THR SEQRES 27 B 424 VAL ASN LYS ASN THR ILE PRO GLY GLU THR ARG SER PRO SEQRES 28 B 424 PHE VAL THR SER GLY ILE ARG ILE GLY SER ALA ALA LEU SEQRES 29 B 424 SER ALA ARG GLY MET GLY ALA LYS GLU PHE GLU ILE ILE SEQRES 30 B 424 GLY ASN LYS ILE SER ASP ILE LEU ASN ASP ILE ASN ASN SEQRES 31 B 424 VAL SER LEU GLN LEU HIS VAL LYS GLU GLU LEU LYS ALA SEQRES 32 B 424 MET VAL ASN GLN PHE PRO VAL TYR HIS GLN PRO ILE PHE SEQRES 33 B 424 ARG SER HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *16(H2 O) HELIX 1 AA1 PHE A 4 ASP A 9 1 6 HELIX 2 AA2 ASP A 9 GLU A 25 1 17 HELIX 3 AA3 PHE A 37 GLY A 45 1 9 HELIX 4 AA4 SER A 46 ASN A 50 5 5 HELIX 5 AA5 ASP A 69 ASN A 84 1 16 HELIX 6 AA6 SER A 94 LEU A 107 1 14 HELIX 7 AA7 ASP A 151 LYS A 163 1 13 HELIX 8 AA8 ASP A 179 GLY A 191 1 13 HELIX 9 AA9 VAL A 201 THR A 207 1 7 HELIX 10 AB1 HIS A 225 ARG A 229 5 5 HELIX 11 AB2 ASP A 240 PHE A 252 1 13 HELIX 12 AB3 LEU A 260 LYS A 276 1 17 HELIX 13 AB4 LYS A 276 LYS A 300 1 25 HELIX 14 AB5 SER A 306 GLY A 308 5 3 HELIX 15 AB6 SER A 324 ALA A 335 1 12 HELIX 16 AB7 SER A 361 ARG A 367 1 7 HELIX 17 AB8 GLY A 370 ASN A 386 1 17 HELIX 18 AB9 ASN A 390 ASN A 406 1 17 HELIX 19 AC1 PHE B 4 ASP B 9 1 6 HELIX 20 AC2 ASP B 9 ASN B 24 1 16 HELIX 21 AC3 PHE B 37 GLY B 45 1 9 HELIX 22 AC4 SER B 46 LYS B 51 5 6 HELIX 23 AC5 ASP B 69 ASN B 84 1 16 HELIX 24 AC6 SER B 94 LEU B 107 1 14 HELIX 25 AC7 ASP B 151 LYS B 163 1 13 HELIX 26 AC8 ASP B 179 GLY B 191 1 13 HELIX 27 AC9 VAL B 201 VAL B 206 1 6 HELIX 28 AD1 HIS B 225 ARG B 229 5 5 HELIX 29 AD2 ASP B 240 PHE B 252 1 13 HELIX 30 AD3 PRO B 253 GLN B 256 5 4 HELIX 31 AD4 LEU B 260 LYS B 276 1 17 HELIX 32 AD5 LYS B 276 LYS B 300 1 25 HELIX 33 AD6 SER B 306 GLY B 308 5 3 HELIX 34 AD7 SER B 324 ASN B 334 1 11 HELIX 35 AD8 SER B 361 ARG B 367 1 7 HELIX 36 AD9 GLY B 370 ASN B 386 1 17 HELIX 37 AE1 ASN B 390 ASN B 406 1 17 SHEET 1 AA1 2 LEU A 27 GLU A 28 0 SHEET 2 AA1 2 ILE A 337 THR A 338 1 O THR A 338 N LEU A 27 SHEET 1 AA2 8 PHE A 87 ASN A 89 0 SHEET 2 AA2 8 GLY A 234 THR A 238 -1 O ILE A 236 N ASN A 89 SHEET 3 AA2 8 VAL A 219 THR A 223 -1 N VAL A 220 O LEU A 237 SHEET 4 AA2 8 LEU A 193 ASP A 197 1 N GLY A 196 O VAL A 219 SHEET 5 AA2 8 ILE A 166 CYS A 169 1 N ILE A 167 O LEU A 195 SHEET 6 AA2 8 LYS A 112 MET A 116 1 N LEU A 114 O VAL A 168 SHEET 7 AA2 8 GLN A 138 TYR A 142 1 O PHE A 140 N ILE A 113 SHEET 8 AA2 8 LEU A 132 THR A 133 -1 N LEU A 132 O SER A 139 SHEET 1 AA3 4 LYS A 303 LEU A 304 0 SHEET 2 AA3 4 LEU A 313 ASP A 317 -1 O ASP A 317 N LYS A 303 SHEET 3 AA3 4 GLY A 356 GLY A 360 -1 O ILE A 359 N LEU A 314 SHEET 4 AA3 4 LYS A 341 ASN A 342 -1 N ASN A 342 O GLY A 356 SHEET 1 AA4 2 LEU B 27 GLU B 28 0 SHEET 2 AA4 2 ILE B 337 THR B 338 1 O THR B 338 N LEU B 27 SHEET 1 AA5 7 PHE B 87 ASN B 89 0 SHEET 2 AA5 7 GLY B 234 THR B 238 -1 O ILE B 236 N ASN B 89 SHEET 3 AA5 7 VAL B 219 THR B 223 -1 N VAL B 220 O LEU B 237 SHEET 4 AA5 7 LEU B 193 ASP B 197 1 N GLY B 196 O SER B 221 SHEET 5 AA5 7 ILE B 166 VAL B 168 1 N ILE B 167 O LEU B 193 SHEET 6 AA5 7 LYS B 112 MET B 116 1 N LEU B 114 O VAL B 168 SHEET 7 AA5 7 GLN B 138 TYR B 142 1 O PHE B 140 N ILE B 113 SHEET 1 AA6 4 LYS B 303 LEU B 304 0 SHEET 2 AA6 4 LEU B 313 ASP B 317 -1 O ASP B 317 N LYS B 303 SHEET 3 AA6 4 GLY B 356 GLY B 360 -1 O ILE B 359 N LEU B 314 SHEET 4 AA6 4 ASN B 340 ASN B 342 -1 N ASN B 342 O GLY B 356 CISPEP 1 PHE A 214 PRO A 215 0 2.64 CISPEP 2 PHE B 214 PRO B 215 0 2.27 CISPEP 3 GLY B 258 PRO B 259 0 -13.14 CRYST1 57.349 87.548 162.476 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017437 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006155 0.00000