HEADER HYDROLASE 14-DEC-17 6F9J TITLE CRYSTAL STRUCTURE OF BARLEY BETA-AMYLASE COMPLEXED WITH 4-O-ALPHA-D- TITLE 2 MANNOPYRANOSYL-(1-DEOXYNOJIRIMYCIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-AMYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.2; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE; SOURCE 3 ORGANISM_COMMON: BARLEY; SOURCE 4 ORGANISM_TAXID: 4513 KEYWDS EDIBLE GRAIN, ENDOSPERM, ENZYME INHIBITORS, MODELS, MOLECULAR, KEYWDS 2 MOLECULAR CONFORMATION, STARCH, STRUCTURE-ACTIVITY RELATIONSHIP, KEYWDS 3 BETA-AMYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MONCAYO,L.L.RODRIGUES,C.E.M.STEVENSON,C.RUZANSKI,M.REJZEK, AUTHOR 2 D.M.LAWSON,J.ANGULO,R.A.FIELD REVDAT 3 17-JAN-24 6F9J 1 HETSYN REVDAT 2 29-JUL-20 6F9J 1 COMPND REMARK HETNAM SITE REVDAT 1 30-JAN-19 6F9J 0 JRNL AUTH M.A.MONCAYO,L.L.RODRIGUES,C.E.M.STEVENSON,C.RUZANSKI, JRNL AUTH 2 M.REJZEK,D.M.LAWSON,J.ANGULO,R.A.FIELD JRNL TITL SYNTHESIS, BIOLOGICAL AND STRUCTURAL ANALYSIS OF PROSPECTIVE JRNL TITL 2 GLYCOSYL-IMINOSUGAR PRODRUGS: IMPACT ON GERMINATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 48428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2601 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3035 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.04000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : 2.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4085 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3640 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5559 ; 1.425 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8453 ; 0.979 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 502 ; 5.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;37.546 ;23.854 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;13.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 575 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4643 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 884 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3456 17.9077 28.2711 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.0783 REMARK 3 T33: 0.1401 T12: -0.0557 REMARK 3 T13: 0.1178 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.5566 L22: 1.8051 REMARK 3 L33: 0.7638 L12: 0.3441 REMARK 3 L13: -0.3743 L23: 0.6618 REMARK 3 S TENSOR REMARK 3 S11: 0.1290 S12: -0.1513 S13: -0.0418 REMARK 3 S21: 0.2608 S22: -0.3209 S23: 0.1811 REMARK 3 S31: 0.0644 S32: -0.0322 S33: 0.1919 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8298 28.5880 16.2167 REMARK 3 T TENSOR REMARK 3 T11: 0.1402 T22: 0.0376 REMARK 3 T33: 0.1662 T12: 0.0186 REMARK 3 T13: 0.0272 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.1495 L22: 0.2750 REMARK 3 L33: 1.1921 L12: 0.1474 REMARK 3 L13: 0.1928 L23: -0.1452 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.0525 S13: 0.0488 REMARK 3 S21: 0.0112 S22: -0.0318 S23: 0.0524 REMARK 3 S31: -0.0349 S32: -0.1085 S33: 0.0578 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9189 27.7962 6.6559 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.0339 REMARK 3 T33: 0.1571 T12: -0.0019 REMARK 3 T13: 0.0072 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.5537 L22: 0.2215 REMARK 3 L33: 0.6940 L12: -0.0752 REMARK 3 L13: 0.5772 L23: 0.0606 REMARK 3 S TENSOR REMARK 3 S11: -0.0594 S12: 0.0198 S13: 0.0355 REMARK 3 S21: 0.0249 S22: -0.0113 S23: 0.0384 REMARK 3 S31: -0.0440 S32: 0.0184 S33: 0.0707 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9332 12.3593 -11.5936 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0579 REMARK 3 T33: 0.1877 T12: -0.0260 REMARK 3 T13: -0.0131 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 0.4872 L22: 1.0936 REMARK 3 L33: 0.3379 L12: -0.4086 REMARK 3 L13: -0.0189 L23: -0.4678 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: 0.0803 S13: -0.0714 REMARK 3 S21: -0.1109 S22: 0.0109 S23: 0.1455 REMARK 3 S31: -0.0050 S32: -0.0251 S33: -0.0762 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2282 19.5882 2.8676 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.0436 REMARK 3 T33: 0.1703 T12: -0.0088 REMARK 3 T13: 0.0099 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.6844 L22: 0.2892 REMARK 3 L33: 1.4468 L12: 0.3274 REMARK 3 L13: 0.7402 L23: 0.6451 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.0059 S13: -0.1247 REMARK 3 S21: -0.0240 S22: 0.0351 S23: -0.0045 REMARK 3 S31: -0.0743 S32: 0.0725 S33: 0.0075 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 290 A 442 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3375 4.2739 13.5822 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.0127 REMARK 3 T33: 0.2616 T12: -0.0100 REMARK 3 T13: 0.0347 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.1589 L22: 0.3146 REMARK 3 L33: 0.5237 L12: 0.1158 REMARK 3 L13: 0.0200 L23: 0.2295 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0010 S13: -0.1534 REMARK 3 S21: 0.0754 S22: -0.0284 S23: 0.0165 REMARK 3 S31: 0.0276 S32: -0.0011 S33: 0.0158 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 443 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6594 11.2894 31.7760 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.0801 REMARK 3 T33: 0.0995 T12: -0.0180 REMARK 3 T13: 0.0102 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: 7.0497 L22: 7.5064 REMARK 3 L33: 6.3362 L12: 6.3549 REMARK 3 L13: -6.3909 L23: -6.7406 REMARK 3 S TENSOR REMARK 3 S11: 0.3015 S12: -0.0549 S13: 0.0387 REMARK 3 S21: 0.3552 S22: -0.2544 S23: 0.0252 REMARK 3 S31: -0.3159 S32: 0.1496 S33: -0.0471 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 454 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): 29.5662 5.0185 8.5012 REMARK 3 T TENSOR REMARK 3 T11: 0.0824 T22: 0.0259 REMARK 3 T33: 0.2065 T12: 0.0190 REMARK 3 T13: 0.0014 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.8162 L22: 0.4804 REMARK 3 L33: 0.8889 L12: 0.3071 REMARK 3 L13: -0.3124 L23: 0.4121 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: -0.0042 S13: -0.2175 REMARK 3 S21: 0.0114 S22: 0.0785 S23: -0.1479 REMARK 3 S31: 0.0794 S32: 0.1207 S33: -0.0067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6F9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 73.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 1.04100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2XFR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% POLYACRYLATE, 100 MM TRIS PH 8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.60000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 960 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 490 REMARK 465 THR A 491 REMARK 465 GLY A 492 REMARK 465 GLY A 493 REMARK 465 MET A 494 REMARK 465 GLY A 495 REMARK 465 GLY A 496 REMARK 465 GLN A 497 REMARK 465 ALA A 498 REMARK 465 GLU A 499 REMARK 465 GLY A 500 REMARK 465 PRO A 501 REMARK 465 THR A 502 REMARK 465 CYS A 503 REMARK 465 GLY A 504 REMARK 465 MET A 505 REMARK 465 GLY A 506 REMARK 465 GLY A 507 REMARK 465 GLN A 508 REMARK 465 VAL A 509 REMARK 465 LYS A 510 REMARK 465 GLY A 511 REMARK 465 PRO A 512 REMARK 465 THR A 513 REMARK 465 GLY A 514 REMARK 465 GLY A 515 REMARK 465 MET A 516 REMARK 465 GLY A 517 REMARK 465 GLY A 518 REMARK 465 GLN A 519 REMARK 465 ALA A 520 REMARK 465 GLU A 521 REMARK 465 ASP A 522 REMARK 465 PRO A 523 REMARK 465 THR A 524 REMARK 465 SER A 525 REMARK 465 GLY A 526 REMARK 465 MET A 527 REMARK 465 GLY A 528 REMARK 465 GLY A 529 REMARK 465 GLU A 530 REMARK 465 LEU A 531 REMARK 465 PRO A 532 REMARK 465 ALA A 533 REMARK 465 THR A 534 REMARK 465 MET A 535 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 241 CD OE1 OE2 REMARK 470 ARG A 242 CD NE CZ NH1 NH2 REMARK 470 LYS A 256 CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 328 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 334 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 143 78.45 -112.29 REMARK 500 ALA A 182 19.67 55.47 REMARK 500 PRO A 199 53.88 -112.18 REMARK 500 ILE A 205 58.16 -113.29 REMARK 500 THR A 340 -166.00 -129.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 6F9J A 1 535 UNP A8CFR3 A8CFR3_HORVU 1 535 SEQADV 6F9J GLU A 165 UNP A8CFR3 ASP 165 VARIANT SEQRES 1 A 535 MET GLU VAL ASN VAL LYS GLY ASN TYR VAL GLN VAL TYR SEQRES 2 A 535 VAL MET LEU PRO LEU ASP ALA VAL SER VAL ASN ASN ARG SEQRES 3 A 535 PHE GLU LYS GLY ASP GLU LEU ARG ALA GLN LEU ARG LYS SEQRES 4 A 535 LEU VAL GLU ALA GLY VAL ASP GLY VAL MET VAL ASP VAL SEQRES 5 A 535 TRP TRP GLY LEU VAL GLU GLY LYS GLY PRO LYS ALA TYR SEQRES 6 A 535 ASP TRP SER ALA TYR LYS GLN LEU PHE GLU LEU VAL GLN SEQRES 7 A 535 LYS ALA GLY LEU LYS LEU GLN ALA ILE MET SER PHE HIS SEQRES 8 A 535 GLN CYS GLY GLY ASN VAL GLY ASP ALA VAL ASN ILE PRO SEQRES 9 A 535 ILE PRO GLN TRP VAL ARG ASP VAL GLY THR ARG ASP PRO SEQRES 10 A 535 ASP ILE PHE TYR THR ASP GLY HIS GLY THR ARG ASN ILE SEQRES 11 A 535 GLU TYR LEU THR LEU GLY VAL ASP ASN GLN PRO LEU PHE SEQRES 12 A 535 HIS GLY ARG SER ALA VAL GLN MET TYR ALA ASP TYR MET SEQRES 13 A 535 THR SER PHE ARG GLU ASN MET LYS GLU PHE LEU ASP ALA SEQRES 14 A 535 GLY VAL ILE VAL ASP ILE GLU VAL GLY LEU GLY PRO ALA SEQRES 15 A 535 GLY GLU MET ARG TYR PRO SER TYR PRO GLN SER HIS GLY SEQRES 16 A 535 TRP SER PHE PRO GLY ILE GLY GLU PHE ILE CYS TYR ASP SEQRES 17 A 535 LYS TYR LEU GLN ALA ASP PHE LYS ALA ALA ALA ALA ALA SEQRES 18 A 535 VAL GLY HIS PRO GLU TRP GLU PHE PRO ASN ASP VAL GLY SEQRES 19 A 535 GLN TYR ASN ASP THR PRO GLU ARG THR GLN PHE PHE ARG SEQRES 20 A 535 ASP ASN GLY THR TYR LEU SER GLU LYS GLY ARG PHE PHE SEQRES 21 A 535 LEU ALA TRP TYR SER ASN ASN LEU ILE LYS HIS GLY ASP SEQRES 22 A 535 ARG ILE LEU ASP GLU ALA ASN LYS VAL PHE LEU GLY TYR SEQRES 23 A 535 LYS VAL GLN LEU ALA ILE LYS ILE SER GLY ILE HIS TRP SEQRES 24 A 535 TRP TYR LYS VAL PRO SER HIS ALA ALA GLU LEU THR ALA SEQRES 25 A 535 GLY TYR TYR ASN LEU HIS ASP ARG ASP GLY TYR ARG THR SEQRES 26 A 535 ILE ALA ARG MET LEU LYS ARG HIS ARG ALA SER ILE ASN SEQRES 27 A 535 PHE THR CYS ALA GLU MET ARG ASP SER GLU GLN SER SER SEQRES 28 A 535 GLN ALA MET SER ALA PRO GLU GLU LEU VAL GLN GLN VAL SEQRES 29 A 535 LEU SER ALA GLY TRP ARG GLU GLY LEU ASN VAL ALA CYS SEQRES 30 A 535 GLU ASN ALA LEU PRO ARG TYR ASP PRO THR ALA TYR ASN SEQRES 31 A 535 THR ILE LEU ARG ASN ALA ARG PRO HIS GLY ILE ASN GLN SEQRES 32 A 535 SER GLY PRO PRO GLU HIS LYS LEU PHE GLY PHE THR TYR SEQRES 33 A 535 LEU ARG LEU SER ASN GLN LEU VAL GLU GLY GLN ASN TYR SEQRES 34 A 535 VAL ASN PHE LYS THR PHE VAL ASP ARG MET HIS ALA ASN SEQRES 35 A 535 LEU PRO ARG ASP PRO TYR VAL ASP PRO MET ALA PRO LEU SEQRES 36 A 535 PRO ARG SER GLY PRO GLU ILE SER ILE GLU MET ILE LEU SEQRES 37 A 535 GLN ALA ALA GLN PRO LYS LEU GLN PRO PHE PRO PHE GLN SEQRES 38 A 535 GLU HIS THR ASP LEU PRO VAL GLY PRO THR GLY GLY MET SEQRES 39 A 535 GLY GLY GLN ALA GLU GLY PRO THR CYS GLY MET GLY GLY SEQRES 40 A 535 GLN VAL LYS GLY PRO THR GLY GLY MET GLY GLY GLN ALA SEQRES 41 A 535 GLU ASP PRO THR SER GLY MET GLY GLY GLU LEU PRO ALA SEQRES 42 A 535 THR MET HET NOJ A 601 11 HET MAN A 602 11 HET CL A 603 1 HETNAM NOJ 1-DEOXYNOJIRIMYCIN HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NOJ MORANOLINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NOJ C6 H13 N O4 FORMUL 3 MAN C6 H12 O6 FORMUL 4 CL CL 1- FORMUL 5 HOH *309(H2 O) HELIX 1 AA1 VAL A 5 TYR A 9 5 5 HELIX 2 AA2 LYS A 29 ALA A 43 1 15 HELIX 3 AA3 TRP A 54 GLU A 58 1 5 HELIX 4 AA4 TRP A 67 ALA A 80 1 14 HELIX 5 AA5 PRO A 106 ASP A 116 1 11 HELIX 6 AA6 LEU A 135 ASP A 138 5 4 HELIX 7 AA7 SER A 147 MET A 163 1 17 HELIX 8 AA8 MET A 163 ALA A 169 1 7 HELIX 9 AA9 GLY A 180 GLU A 184 5 5 HELIX 10 AB1 PRO A 191 GLY A 195 5 5 HELIX 11 AB2 ASP A 208 VAL A 222 1 15 HELIX 12 AB3 THR A 239 THR A 243 5 5 HELIX 13 AB4 GLY A 250 LEU A 253 5 4 HELIX 14 AB5 SER A 254 LEU A 284 1 31 HELIX 15 AB6 HIS A 306 GLY A 313 1 8 HELIX 16 AB7 TYR A 323 ARG A 332 1 10 HELIX 17 AB8 ARG A 345 GLN A 349 5 5 HELIX 18 AB9 ALA A 356 GLU A 371 1 16 HELIX 19 AC1 ASP A 385 ARG A 397 1 13 HELIX 20 AC2 GLU A 425 HIS A 440 1 16 HELIX 21 AC3 SER A 463 GLN A 469 1 7 HELIX 22 AC4 ALA A 470 GLN A 472 5 3 SHEET 1 AA1 9 GLN A 11 MET A 15 0 SHEET 2 AA1 9 GLY A 47 TRP A 53 1 O MET A 49 N VAL A 14 SHEET 3 AA1 9 LYS A 83 SER A 89 1 O ILE A 87 N VAL A 50 SHEET 4 AA1 9 ILE A 172 VAL A 177 1 O GLU A 176 N MET A 88 SHEET 5 AA1 9 GLN A 289 LYS A 293 1 O ALA A 291 N VAL A 177 SHEET 6 AA1 9 SER A 336 PHE A 339 1 O SER A 336 N LEU A 290 SHEET 7 AA1 9 VAL A 375 GLU A 378 1 O ALA A 376 N ILE A 337 SHEET 8 AA1 9 GLY A 413 TYR A 416 1 O THR A 415 N CYS A 377 SHEET 9 AA1 9 GLN A 11 MET A 15 1 N TYR A 13 O PHE A 414 SHEET 1 AA2 2 PHE A 120 THR A 122 0 SHEET 2 AA2 2 ARG A 128 LEU A 133 -1 O ASN A 129 N TYR A 121 LINK O4 NOJ A 601 C1 MAN A 602 1555 1555 1.44 CISPEP 1 PHE A 198 PRO A 199 0 3.30 CISPEP 2 LEU A 417 ARG A 418 0 -11.13 CISPEP 3 GLN A 472 PRO A 473 0 -8.72 CRYST1 73.200 99.320 64.530 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013661 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015497 0.00000