HEADER HYDROLASE 15-DEC-17 6FAA TITLE CRYSTAL STRUCTURE OF THE DEAH-BOX HELICASE PRP2 IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MRNA SPLICING FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 270-921; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 759272; SOURCE 4 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 5 GENE: CTHT_0063660; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PASG-IBA25 KEYWDS SPLICING, ATPASE, HELICASE, G-PATCH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHMITT,F.HAMANN,P.NEUMANN,R.FICNER REVDAT 2 17-JAN-24 6FAA 1 REMARK REVDAT 1 11-JUL-18 6FAA 0 JRNL AUTH A.SCHMITT,F.HAMANN,P.NEUMANN,R.FICNER JRNL TITL CRYSTAL STRUCTURE OF THE SPLICEOSOMAL DEAH-BOX ATPASE PRP2. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 643 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29968674 JRNL DOI 10.1107/S2059798318006356 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 48349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0151 - 5.0635 0.96 2807 148 0.1684 0.1640 REMARK 3 2 5.0635 - 4.0198 0.98 2741 145 0.1327 0.1717 REMARK 3 3 4.0198 - 3.5119 0.98 2716 142 0.1541 0.1925 REMARK 3 4 3.5119 - 3.1909 0.99 2722 144 0.1773 0.2102 REMARK 3 5 3.1909 - 2.9622 0.99 2711 142 0.1927 0.2366 REMARK 3 6 2.9622 - 2.7876 0.99 2685 142 0.1975 0.2466 REMARK 3 7 2.7876 - 2.6480 0.99 2711 143 0.1994 0.2488 REMARK 3 8 2.6480 - 2.5327 1.00 2709 142 0.2036 0.2451 REMARK 3 9 2.5327 - 2.4352 1.00 2708 143 0.2019 0.2411 REMARK 3 10 2.4352 - 2.3512 0.99 2693 141 0.2031 0.2707 REMARK 3 11 2.3512 - 2.2777 1.00 2642 139 0.2075 0.2516 REMARK 3 12 2.2777 - 2.2126 0.99 2718 144 0.2146 0.2607 REMARK 3 13 2.2126 - 2.1543 1.00 2690 141 0.2284 0.2622 REMARK 3 14 2.1543 - 2.1018 1.00 2654 140 0.2365 0.3026 REMARK 3 15 2.1018 - 2.0540 0.99 2695 143 0.2497 0.2879 REMARK 3 16 2.0540 - 2.0103 0.99 2631 138 0.2718 0.3146 REMARK 3 17 2.0103 - 1.9701 0.99 2696 143 0.2983 0.3282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5207 REMARK 3 ANGLE : 1.051 7073 REMARK 3 CHIRALITY : 0.053 807 REMARK 3 PLANARITY : 0.010 915 REMARK 3 DIHEDRAL : 27.320 5447 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7085 14.5909 -53.9615 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.2275 REMARK 3 T33: 0.1739 T12: 0.0221 REMARK 3 T13: 0.0380 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.1061 L22: 0.4324 REMARK 3 L33: 0.9831 L12: 0.0172 REMARK 3 L13: 0.3350 L23: 0.2370 REMARK 3 S TENSOR REMARK 3 S11: 0.1494 S12: 0.2740 S13: -0.0980 REMARK 3 S21: -0.2921 S22: 0.0184 S23: -0.0971 REMARK 3 S31: -0.0277 S32: 0.0507 S33: 0.1509 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 337 THROUGH 450 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7374 23.1516 -39.6936 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.1627 REMARK 3 T33: 0.1769 T12: -0.0114 REMARK 3 T13: 0.0362 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.6395 L22: 1.0268 REMARK 3 L33: 0.7984 L12: -0.2321 REMARK 3 L13: 0.1578 L23: 0.5139 REMARK 3 S TENSOR REMARK 3 S11: 0.0374 S12: -0.0458 S13: 0.0800 REMARK 3 S21: -0.0356 S22: 0.0816 S23: -0.1049 REMARK 3 S31: -0.1346 S32: 0.0956 S33: 0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 451 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8074 12.1767 -48.5205 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.2422 REMARK 3 T33: 0.2090 T12: 0.0369 REMARK 3 T13: -0.0255 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.8614 L22: 0.4497 REMARK 3 L33: 0.3558 L12: 0.0738 REMARK 3 L13: 0.1333 L23: 0.3682 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: 0.1601 S13: 0.0241 REMARK 3 S21: -0.2414 S22: -0.0086 S23: 0.2338 REMARK 3 S31: -0.0014 S32: -0.0971 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 489 THROUGH 589 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2829 -4.9347 -32.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.1438 REMARK 3 T33: 0.2401 T12: 0.0073 REMARK 3 T13: 0.0343 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.5356 L22: 0.9634 REMARK 3 L33: 0.5474 L12: 0.4238 REMARK 3 L13: 0.3004 L23: -0.0599 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.1109 S13: -0.2116 REMARK 3 S21: 0.0845 S22: -0.0585 S23: -0.2502 REMARK 3 S31: 0.1228 S32: 0.0749 S33: -0.0037 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 590 THROUGH 631 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2893 10.0463 -35.7602 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: 0.1801 REMARK 3 T33: 0.2316 T12: 0.0085 REMARK 3 T13: -0.0039 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.6559 L22: 0.4586 REMARK 3 L33: 0.2084 L12: 0.2381 REMARK 3 L13: 0.0153 L23: -0.2599 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.0602 S13: 0.0697 REMARK 3 S21: -0.0560 S22: -0.0699 S23: 0.1312 REMARK 3 S31: -0.1026 S32: -0.0955 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 632 THROUGH 721 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2025 26.0398 -29.1461 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.1722 REMARK 3 T33: 0.1916 T12: 0.0364 REMARK 3 T13: 0.0161 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.2511 L22: 0.4582 REMARK 3 L33: 0.3781 L12: -0.0979 REMARK 3 L13: -0.0737 L23: 0.0698 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -0.0269 S13: 0.0191 REMARK 3 S21: 0.0439 S22: -0.0181 S23: 0.0826 REMARK 3 S31: -0.1048 S32: -0.0540 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 722 THROUGH 858 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0603 11.6435 -9.2102 REMARK 3 T TENSOR REMARK 3 T11: 0.2928 T22: 0.2565 REMARK 3 T33: 0.1808 T12: 0.0521 REMARK 3 T13: -0.0263 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.6705 L22: 1.2923 REMARK 3 L33: 0.7635 L12: 0.3782 REMARK 3 L13: 0.0414 L23: 0.1124 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.1598 S13: -0.0900 REMARK 3 S21: 0.3229 S22: 0.0927 S23: -0.1333 REMARK 3 S31: 0.1412 S32: 0.0781 S33: 0.0032 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 859 THROUGH 921 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6283 16.3071 -8.3297 REMARK 3 T TENSOR REMARK 3 T11: 0.3133 T22: 0.3496 REMARK 3 T33: 0.2897 T12: 0.0022 REMARK 3 T13: 0.0770 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.4493 L22: 0.4820 REMARK 3 L33: 0.4871 L12: 0.0958 REMARK 3 L13: 0.0139 L23: 0.1809 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: -0.1958 S13: -0.0217 REMARK 3 S21: 0.2684 S22: -0.0458 S23: 0.3325 REMARK 3 S31: 0.0615 S32: -0.3770 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9202 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48358 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.84600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XAU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20 M NACL, 15% (W/V) PEG8000, 0.1 M REMARK 280 TRIS/HCL PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.13000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.92000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.92000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.13000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 267 REMARK 465 PRO A 268 REMARK 465 MET A 269 REMARK 465 THR A 270 REMARK 465 PRO A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 ARG A 274 REMARK 465 LEU A 275 REMARK 465 LEU A 276 REMARK 465 LYS A 277 REMARK 465 GLN A 278 REMARK 465 LYS A 279 REMARK 465 ILE A 280 REMARK 465 GLU A 281 REMARK 465 GLU A 282 REMARK 465 GLY A 602 REMARK 465 THR A 603 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 605 NZ LYS A 691 2.01 REMARK 500 O HOH A 1244 O HOH A 1340 2.17 REMARK 500 O HOH A 1203 O HOH A 1323 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 831 NH1 ARG A 860 1655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 600 C - N - CD ANGL. DEV. = -46.4 DEGREES REMARK 500 ARG A 860 NE - CZ - NH1 ANGL. DEV. = -7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 373 -110.23 -96.64 REMARK 500 PHE A 381 -0.27 74.19 REMARK 500 PHE A 462 49.32 -92.86 REMARK 500 LEU A 513 -168.29 -106.72 REMARK 500 ARG A 628 -73.74 -141.49 REMARK 500 LEU A 637 46.86 -82.29 REMARK 500 ARG A 657 20.76 -144.25 REMARK 500 ASP A 775 11.77 59.69 REMARK 500 LEU A 827 -148.00 -107.79 REMARK 500 ASP A 828 43.63 -106.99 REMARK 500 THR A 900 -110.14 -117.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 327 OG1 REMARK 620 2 ADP A1001 O3B 90.0 REMARK 620 3 HOH A1138 O 173.3 93.2 REMARK 620 4 HOH A1158 O 99.4 86.8 86.6 REMARK 620 5 HOH A1216 O 81.1 98.0 92.6 175.2 REMARK 620 6 HOH A1247 O 93.0 173.8 84.4 87.4 87.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 1007 DBREF 6FAA A 270 921 UNP G0SEG4 G0SEG4_CHATD 270 921 SEQADV 6FAA GLY A 267 UNP G0SEG4 EXPRESSION TAG SEQADV 6FAA PRO A 268 UNP G0SEG4 EXPRESSION TAG SEQADV 6FAA MET A 269 UNP G0SEG4 EXPRESSION TAG SEQRES 1 A 655 GLY PRO MET THR PRO GLU GLN ARG LEU LEU LYS GLN LYS SEQRES 2 A 655 ILE GLU GLU ALA GLU ARG ALA GLN ARG THR ILE GLN GLU SEQRES 3 A 655 VAL ARG LYS SER LEU PRO VAL TYR ALA TYR ARG ASP ALA SEQRES 4 A 655 PHE LEU ASP ALA VAL LYS GLU TYR GLN VAL LEU ILE LEU SEQRES 5 A 655 VAL GLY GLU THR GLY SER GLY LYS THR THR GLN ILE PRO SEQRES 6 A 655 GLN TYR LEU HIS GLU ALA GLY TYR THR LYS GLY ASN ARG SEQRES 7 A 655 LYS ILE ALA CYS THR GLN PRO ARG ARG VAL ALA ALA MET SEQRES 8 A 655 SER VAL ALA ALA ARG VAL ALA ASP GLU MET GLY VAL ARG SEQRES 9 A 655 LEU GLY HIS GLU VAL GLY TYR SER ILE ARG PHE GLU ASP SEQRES 10 A 655 CYS THR SER GLU LYS THR ILE LEU LYS TYR MET THR ASP SEQRES 11 A 655 GLY MET LEU LEU ARG GLU MET VAL THR SER PRO ASP LEU SEQRES 12 A 655 ALA ASP TYR SER CYS ILE MET ILE ASP GLU ALA HIS GLU SEQRES 13 A 655 ARG THR VAL HIS THR ASP ILE LEU LEU ALA LEU ILE LYS SEQRES 14 A 655 ASP LEU THR ARG ALA ARG PRO GLU LEU ARG LEU ILE ILE SEQRES 15 A 655 SER SER ALA THR LEU ASN ALA GLU LYS PHE SER ALA TYR SEQRES 16 A 655 PHE ASP ASP ALA PRO ILE PHE ASN VAL PRO GLY ARG VAL SEQRES 17 A 655 HIS PRO VAL GLU VAL TYR TYR THR SER ALA PRO GLU SER SEQRES 18 A 655 ASN TYR LEU GLU ALA ALA LEU VAL THR VAL PHE GLN ILE SEQRES 19 A 655 HIS ALA THR GLN PRO GLU GLY ASP ILE LEU VAL PHE LEU SEQRES 20 A 655 THR GLY GLN GLU GLU ILE GLU ARG ALA CYS GLU ARG VAL SEQRES 21 A 655 GLU GLU ILE ARG ARG LYS LEU GLY LYS ARG VAL PRO GLU SEQRES 22 A 655 ILE ILE ALA LEU PRO ILE TYR SER ASN MET PRO SER GLU SEQRES 23 A 655 MET GLN ALA LYS ILE PHE GLU PRO THR PRO PRO GLY ALA SEQRES 24 A 655 ARG LYS VAL VAL PHE SER THR ASN ILE ALA GLU THR SER SEQRES 25 A 655 LEU THR ILE ASP GLY ILE VAL TYR VAL ILE ASP SER GLY SEQRES 26 A 655 TYR VAL LYS GLU ASN THR PHE SER PRO VAL GLY THR THR SEQRES 27 A 655 GLY GLN SER THR LEU ALA VAL VAL PRO CYS SER ARG ALA SEQRES 28 A 655 ALA ALA ASN GLN ARG MET GLY ARG ALA GLY ARG VAL LYS SEQRES 29 A 655 PRO GLY LYS CYS PHE ARG LEU TYR THR LYS TYR ALA TYR SEQRES 30 A 655 LEU SER GLU MET ASP GLU SER PRO THR PRO GLU ILE GLN SEQRES 31 A 655 ARG THR SER LEU SER SER VAL VAL LEU GLN LEU LYS ALA SEQRES 32 A 655 LEU GLY ILE ASP ASP LEU LEU GLY PHE ASP PHE LEU ASP SEQRES 33 A 655 PRO PRO PRO THR GLU LEU LEU ILE LYS SER LEU ASN MET SEQRES 34 A 655 LEU TYR ALA LEU GLY ALA LEU ASN SER ALA GLY GLN LEU SEQRES 35 A 655 THR ARG VAL GLY ARG GLN MET GLY GLU PHE PRO THR GLU SEQRES 36 A 655 PRO MET LEU ALA LYS ALA LEU ILE ALA ALA THR GLN GLU SEQRES 37 A 655 GLY CYS VAL SER GLU VAL LEU THR ILE VAL SER MET LEU SEQRES 38 A 655 GLY GLU VAL GLY THR LEU PHE PHE ARG PRO LYS ASP LYS SEQRES 39 A 655 LYS VAL HIS ALA ASP SER ALA ARG ALA ARG PHE THR VAL SEQRES 40 A 655 ARG ASP GLY GLY ASP HIS LEU THR LEU LEU ASN ILE TYR SEQRES 41 A 655 ASN GLN TRP VAL GLU ALA GLU TYR SER PRO ILE TRP ALA SEQRES 42 A 655 ARG GLU ASN PHE LEU ALA GLN ARG SER LEU THR ARG ALA SEQRES 43 A 655 ARG ASP VAL ARG ASP GLN LEU ALA LYS LEU CYS ASP ARG SEQRES 44 A 655 ILE LEU ASP GLY SER GLU ALA SER CYS GLY GLY VAL ASN SEQRES 45 A 655 ASN PRO THR PRO ILE LEU ARG ALA LEU THR ALA ALA PHE SEQRES 46 A 655 PHE LEU ASN ALA ALA ARG LEU ASN ARG ALA GLY ASP GLY SEQRES 47 A 655 TYR ARG THR LEU LYS ASN ASN ILE THR VAL TYR VAL HIS SEQRES 48 A 655 PRO SER SER VAL VAL ARG GLY MET ASP PRO PRO PRO LYS SEQRES 49 A 655 VAL ILE ILE TYR HIS GLU LEU VAL VAL THR SER LYS GLU SEQRES 50 A 655 TYR VAL ARG SER VAL ILE PRO VAL GLU PRO ARG TRP LEU SEQRES 51 A 655 SER GLU PHE GLY ALA HET ADP A1001 27 HET MG A1002 1 HET GOL A1003 6 HET GOL A1004 6 HET GOL A1005 6 HET GOL A1006 6 HET EOH A1007 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM EOH ETHANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 GOL 4(C3 H8 O3) FORMUL 8 EOH C2 H6 O FORMUL 9 HOH *445(H2 O) HELIX 1 AA1 ALA A 283 SER A 296 1 14 HELIX 2 AA2 LEU A 297 ALA A 301 5 5 HELIX 3 AA3 TYR A 302 TYR A 313 1 12 HELIX 4 AA4 GLY A 325 ALA A 337 1 13 HELIX 5 AA5 ARG A 352 GLY A 368 1 17 HELIX 6 AA6 ASP A 396 SER A 406 1 11 HELIX 7 AA7 GLU A 419 ARG A 423 5 5 HELIX 8 AA8 THR A 424 ARG A 441 1 18 HELIX 9 AA9 ALA A 455 PHE A 462 1 8 HELIX 10 AB1 ASN A 488 GLN A 504 1 17 HELIX 11 AB2 GLY A 515 LEU A 533 1 19 HELIX 12 AB3 PRO A 550 PHE A 558 1 9 HELIX 13 AB4 ASN A 573 SER A 578 1 6 HELIX 14 AB5 SER A 615 ARG A 625 1 11 HELIX 15 AB6 LYS A 640 GLU A 646 1 7 HELIX 16 AB7 PRO A 653 ARG A 657 5 5 HELIX 17 AB8 LEU A 660 LEU A 670 1 11 HELIX 18 AB9 PRO A 685 LEU A 699 1 15 HELIX 19 AC1 THR A 709 PHE A 718 1 10 HELIX 20 AC2 GLU A 721 GLY A 735 1 15 HELIX 21 AC3 CYS A 736 GLY A 748 1 13 HELIX 22 AC4 PRO A 757 ASP A 759 5 3 HELIX 23 AC5 LYS A 760 PHE A 771 1 12 HELIX 24 AC6 GLY A 776 ALA A 792 1 17 HELIX 25 AC7 SER A 795 ASN A 802 1 8 HELIX 26 AC8 ALA A 805 LEU A 827 1 23 HELIX 27 AC9 ASN A 839 PHE A 852 1 14 HELIX 28 AD1 SER A 880 MET A 885 5 6 HELIX 29 AD2 GLU A 912 GLY A 920 1 9 SHEET 1 AA1 8 GLU A 382 CYS A 384 0 SHEET 2 AA1 8 VAL A 375 ILE A 379 -1 N ILE A 379 O GLU A 382 SHEET 3 AA1 8 LEU A 391 THR A 395 1 O LEU A 391 N GLY A 376 SHEET 4 AA1 8 LYS A 345 GLN A 350 1 N ILE A 346 O LYS A 392 SHEET 5 AA1 8 TYR A 412 ILE A 417 1 O MET A 416 N ALA A 347 SHEET 6 AA1 8 ARG A 445 SER A 450 1 O ARG A 445 N ILE A 415 SHEET 7 AA1 8 VAL A 315 GLY A 320 1 N LEU A 318 O ILE A 448 SHEET 8 AA1 8 ILE A 467 VAL A 470 1 O PHE A 468 N ILE A 317 SHEET 1 AA2 6 VAL A 477 THR A 482 0 SHEET 2 AA2 6 GLY A 632 THR A 639 1 O CYS A 634 N GLU A 478 SHEET 3 AA2 6 ILE A 584 ASP A 589 1 N VAL A 587 O PHE A 635 SHEET 4 AA2 6 ASP A 508 PHE A 512 1 N PHE A 512 O ILE A 588 SHEET 5 AA2 6 ARG A 566 SER A 571 1 O VAL A 569 N VAL A 511 SHEET 6 AA2 6 ILE A 540 ILE A 545 1 N ILE A 541 O VAL A 568 SHEET 1 AA3 9 TYR A 592 THR A 597 0 SHEET 2 AA3 9 THR A 608 PRO A 613 -1 O VAL A 612 N VAL A 593 SHEET 3 AA3 9 LEU A 897 VAL A 899 1 O VAL A 899 N VAL A 611 SHEET 4 AA3 9 GLU A 903 VAL A 905 -1 O TYR A 904 N VAL A 898 SHEET 5 AA3 9 THR A 873 VAL A 876 1 N TYR A 875 O GLU A 903 SHEET 6 AA3 9 TYR A 865 THR A 867 -1 N TYR A 865 O VAL A 874 SHEET 7 AA3 9 ALA A 855 LEU A 858 -1 N ARG A 857 O ARG A 866 SHEET 8 AA3 9 VAL A 891 TYR A 894 -1 O ILE A 892 N ALA A 856 SHEET 9 AA3 9 VAL A 908 PRO A 910 -1 O ILE A 909 N ILE A 893 LINK OG1 THR A 327 MG MG A1002 1555 1555 2.01 LINK O3B ADP A1001 MG MG A1002 1555 1555 2.12 LINK MG MG A1002 O HOH A1138 1555 1555 2.24 LINK MG MG A1002 O HOH A1158 1555 1555 2.12 LINK MG MG A1002 O HOH A1216 1555 1555 2.14 LINK MG MG A1002 O HOH A1247 1555 1555 2.14 CISPEP 1 ASP A 886 PRO A 887 0 7.51 SITE 1 AC1 21 THR A 322 GLY A 323 SER A 324 GLY A 325 SITE 2 AC1 21 LYS A 326 THR A 327 THR A 328 ARG A 362 SITE 3 AC1 21 THR A 580 ASP A 582 ARG A 628 MG A1002 SITE 4 AC1 21 EOH A1007 HOH A1101 HOH A1129 HOH A1134 SITE 5 AC1 21 HOH A1138 HOH A1148 HOH A1158 HOH A1176 SITE 6 AC1 21 HOH A1262 SITE 1 AC2 6 THR A 327 ADP A1001 HOH A1138 HOH A1158 SITE 2 AC2 6 HOH A1216 HOH A1247 SITE 1 AC3 9 THR A 514 GLY A 515 GLN A 516 TYR A 546 SITE 2 AC3 9 SER A 547 LYS A 594 HOH A1113 HOH A1180 SITE 3 AC3 9 HOH A1291 SITE 1 AC4 6 SER A 487 ASN A 488 TYR A 489 GLU A 518 SITE 2 AC4 6 ARG A 521 HOH A1204 SITE 1 AC5 5 ASP A 308 ALA A 460 ASP A 463 ASP A 464 SITE 2 AC5 5 HOH A1383 SITE 1 AC6 5 ARG A 380 THR A 720 GLU A 721 LEU A 724 SITE 2 AC6 5 HOH A1123 SITE 1 AC7 8 THR A 328 VAL A 359 ARG A 362 PHE A 558 SITE 2 AC7 8 LEU A 579 THR A 580 ADP A1001 HOH A1176 CRYST1 50.260 114.210 117.840 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008486 0.00000