HEADER HYDROLASE 15-DEC-17 6FAC TITLE CRYSTAL STRUCTURE OF THE DEAH-BOX HELICASE PRP2 IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MRNA SPLICING FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 3- 610; COMPND 5 SYNONYM: PRP2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 759272; SOURCE 4 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 5 GENE: CTHT_0063660; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PASG-IBA25 KEYWDS SPLICING, ATPASE, HELICASE, G-PATCH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHMITT,F.HAMANN,P.NEUMANN,R.FICNER REVDAT 3 17-JAN-24 6FAC 1 LINK REVDAT 2 25-DEC-19 6FAC 1 REMARK REVDAT 1 11-JUL-18 6FAC 0 JRNL AUTH A.SCHMITT,F.HAMANN,P.NEUMANN,R.FICNER JRNL TITL CRYSTAL STRUCTURE OF THE SPLICEOSOMAL DEAH-BOX ATPASE PRP2. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 643 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29968674 JRNL DOI 10.1107/S2059798318006356 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 46832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4220 - 5.2687 0.99 2699 143 0.1732 0.1837 REMARK 3 2 5.2687 - 4.1828 0.99 2648 139 0.1601 0.1755 REMARK 3 3 4.1828 - 3.6543 1.00 2631 139 0.1745 0.2187 REMARK 3 4 3.6543 - 3.3203 0.99 2611 137 0.2055 0.2434 REMARK 3 5 3.3203 - 3.0824 1.00 2613 138 0.2432 0.2761 REMARK 3 6 3.0824 - 2.9007 1.00 2648 139 0.2486 0.2842 REMARK 3 7 2.9007 - 2.7554 1.00 2625 138 0.2577 0.3006 REMARK 3 8 2.7554 - 2.6355 0.99 2617 138 0.2607 0.2843 REMARK 3 9 2.6355 - 2.5340 1.00 2611 137 0.2650 0.2922 REMARK 3 10 2.5340 - 2.4466 1.00 2620 138 0.2722 0.3184 REMARK 3 11 2.4466 - 2.3701 1.00 2607 137 0.2883 0.3139 REMARK 3 12 2.3701 - 2.3024 1.00 2599 137 0.3001 0.3115 REMARK 3 13 2.3024 - 2.2417 1.00 2619 138 0.3189 0.3840 REMARK 3 14 2.2417 - 2.1871 0.99 2562 135 0.3283 0.3304 REMARK 3 15 2.1871 - 2.1373 0.99 2606 137 0.3426 0.3679 REMARK 3 16 2.1373 - 2.0918 1.00 2581 136 0.3439 0.3717 REMARK 3 17 2.0918 - 2.0500 0.99 2592 137 0.3553 0.3763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5266 REMARK 3 ANGLE : 1.476 7163 REMARK 3 CHIRALITY : 0.090 821 REMARK 3 PLANARITY : 0.014 924 REMARK 3 DIHEDRAL : 13.599 5559 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2201 -14.8495 6.1968 REMARK 3 T TENSOR REMARK 3 T11: 0.3639 T22: 0.3548 REMARK 3 T33: 0.2610 T12: 0.0810 REMARK 3 T13: 0.0687 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 0.8671 L22: 1.6017 REMARK 3 L33: 1.6917 L12: 0.0993 REMARK 3 L13: 0.8327 L23: -0.6266 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: 0.1717 S13: -0.0081 REMARK 3 S21: -0.5621 S22: 0.0598 S23: -0.0480 REMARK 3 S31: 0.5052 S32: 0.3361 S33: -0.0247 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0675 -21.5062 22.4794 REMARK 3 T TENSOR REMARK 3 T11: 0.3415 T22: 0.3465 REMARK 3 T33: 0.3412 T12: 0.1268 REMARK 3 T13: 0.0125 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.7889 L22: 0.6882 REMARK 3 L33: 1.6413 L12: -0.0083 REMARK 3 L13: 0.2970 L23: -0.6183 REMARK 3 S TENSOR REMARK 3 S11: 0.0698 S12: -0.0944 S13: -0.2030 REMARK 3 S21: -0.0007 S22: 0.0299 S23: -0.2926 REMARK 3 S31: 0.3304 S32: 0.3802 S33: 0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 452 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.9294 0.0939 25.1204 REMARK 3 T TENSOR REMARK 3 T11: 0.3954 T22: 0.5091 REMARK 3 T33: 0.5564 T12: -0.1311 REMARK 3 T13: -0.0251 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 1.2801 L22: 0.6792 REMARK 3 L33: 2.3973 L12: -0.2739 REMARK 3 L13: 0.7701 L23: 0.1202 REMARK 3 S TENSOR REMARK 3 S11: -0.1808 S12: 0.1080 S13: 0.4162 REMARK 3 S21: 0.3409 S22: 0.0261 S23: -0.2420 REMARK 3 S31: -0.5218 S32: 0.4614 S33: -0.0024 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 489 THROUGH 536 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3813 11.8385 17.6459 REMARK 3 T TENSOR REMARK 3 T11: 0.6264 T22: 0.3570 REMARK 3 T33: 0.5061 T12: 0.1628 REMARK 3 T13: -0.0935 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.1966 L22: 1.7437 REMARK 3 L33: 1.0326 L12: -0.2319 REMARK 3 L13: -0.2365 L23: 0.2461 REMARK 3 S TENSOR REMARK 3 S11: -0.1761 S12: 0.0514 S13: 0.2770 REMARK 3 S21: -0.0044 S22: 0.0929 S23: 0.4417 REMARK 3 S31: -0.4939 S32: -0.1760 S33: -0.0062 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 537 THROUGH 698 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6529 -4.4058 27.7508 REMARK 3 T TENSOR REMARK 3 T11: 0.3666 T22: 0.3988 REMARK 3 T33: 0.3462 T12: 0.0518 REMARK 3 T13: -0.0319 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 1.2827 L22: 2.9358 REMARK 3 L33: 1.6836 L12: -0.3479 REMARK 3 L13: 0.5241 L23: -0.3281 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: -0.1946 S13: 0.1477 REMARK 3 S21: 0.2546 S22: -0.0005 S23: -0.1602 REMARK 3 S31: -0.3259 S32: -0.0208 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 699 THROUGH 749 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7571 -27.8634 32.6271 REMARK 3 T TENSOR REMARK 3 T11: 0.4917 T22: 0.4380 REMARK 3 T33: 0.4158 T12: 0.0144 REMARK 3 T13: -0.0323 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 2.0072 L22: 1.2890 REMARK 3 L33: 1.1761 L12: 0.9372 REMARK 3 L13: -0.5391 L23: 0.6117 REMARK 3 S TENSOR REMARK 3 S11: 0.2400 S12: -0.3731 S13: -0.3104 REMARK 3 S21: -0.0431 S22: -0.1113 S23: 0.3467 REMARK 3 S31: 0.4943 S32: -0.3083 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 750 THROUGH 826 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8993 -12.6884 21.6098 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 0.6018 REMARK 3 T33: 0.7032 T12: 0.1708 REMARK 3 T13: -0.0280 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 3.4050 L22: 2.5034 REMARK 3 L33: 3.2732 L12: 0.6360 REMARK 3 L13: 0.2941 L23: 0.0984 REMARK 3 S TENSOR REMARK 3 S11: 0.4090 S12: 0.3796 S13: 0.7293 REMARK 3 S21: -0.5180 S22: -0.2893 S23: 0.5813 REMARK 3 S31: -0.1594 S32: -0.6781 S33: 0.1081 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 827 THROUGH 880 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9606 -17.4124 41.0470 REMARK 3 T TENSOR REMARK 3 T11: 0.4283 T22: 0.8541 REMARK 3 T33: 0.5245 T12: 0.0361 REMARK 3 T13: 0.1255 T23: -0.0981 REMARK 3 L TENSOR REMARK 3 L11: 2.3805 L22: 1.9011 REMARK 3 L33: 2.7522 L12: -0.3492 REMARK 3 L13: 1.1469 L23: -0.7691 REMARK 3 S TENSOR REMARK 3 S11: -0.0858 S12: -1.0581 S13: -0.1255 REMARK 3 S21: 0.7630 S22: 0.0223 S23: 0.5435 REMARK 3 S31: 0.4112 S32: -0.5936 S33: 0.0378 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 881 THROUGH 920 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4511 -13.2654 42.4920 REMARK 3 T TENSOR REMARK 3 T11: 0.4693 T22: 0.8636 REMARK 3 T33: 0.7212 T12: 0.1199 REMARK 3 T13: 0.1412 T23: -0.1610 REMARK 3 L TENSOR REMARK 3 L11: 0.9753 L22: 0.8211 REMARK 3 L33: 0.8143 L12: 0.0136 REMARK 3 L13: 0.3187 L23: -0.1118 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: -0.5362 S13: 0.0039 REMARK 3 S21: -0.0267 S22: -0.1618 S23: 0.4518 REMARK 3 S31: -0.1689 S32: -0.5457 S33: -0.1009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FAC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 46.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.080 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FAA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M MGCL2/CACL2, 0.1 M HEPES/MOPS REMARK 280 PH 7.5, 20% (W/V) ETYLENE GLYCOL, 10% (W/V) PEG 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.37000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.37000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 267 REMARK 465 ALA A 921 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 268 CG CD REMARK 470 MET A 269 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 514 OE2 GLU A 518 1.94 REMARK 500 O PRO A 683 O HOH A 1101 1.96 REMARK 500 N7 ADP A 1001 O HOH A 1102 2.15 REMARK 500 O HOH A 1190 O HOH A 1264 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 625 CZ ARG A 625 NH1 0.128 REMARK 500 GLU A 734 CB GLU A 734 CG -0.132 REMARK 500 ARG A 845 CB ARG A 845 CG -0.246 REMARK 500 ARG A 845 CG ARG A 845 CD -0.195 REMARK 500 ARG A 845 NE ARG A 845 CZ -0.100 REMARK 500 ARG A 845 CZ ARG A 845 NH2 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 512 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 525 CG - CD - NE ANGL. DEV. = -14.1 DEGREES REMARK 500 GLU A 528 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 GLU A 528 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 625 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG A 625 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 625 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 710 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 710 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 GLU A 734 CA - CB - CG ANGL. DEV. = 19.0 DEGREES REMARK 500 ARG A 845 CG - CD - NE ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 845 NE - CZ - NH1 ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 845 NE - CZ - NH2 ANGL. DEV. = -23.0 DEGREES REMARK 500 LEU A 916 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 373 -106.89 -96.77 REMARK 500 CYS A 384 68.80 -109.04 REMARK 500 PHE A 462 33.76 -91.83 REMARK 500 PRO A 505 -179.43 -64.39 REMARK 500 LEU A 513 -164.56 -105.13 REMARK 500 ASN A 573 5.75 -66.92 REMARK 500 THR A 577 -9.79 -142.18 REMARK 500 LEU A 637 35.42 -88.50 REMARK 500 SER A 645 -58.19 -125.02 REMARK 500 LEU A 827 -155.08 -104.29 REMARK 500 ASN A 854 30.61 -97.07 REMARK 500 SER A 901 -121.48 56.83 REMARK 500 SER A 907 89.58 64.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 512 0.06 SIDE CHAIN REMARK 500 ARG A 710 0.12 SIDE CHAIN REMARK 500 GLU A 749 0.08 SIDE CHAIN REMARK 500 ASP A 775 0.07 SIDE CHAIN REMARK 500 ARG A 845 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 327 OG1 REMARK 620 2 ADP A1001 O3B 79.9 REMARK 620 3 HOH A1104 O 85.0 87.6 REMARK 620 4 HOH A1138 O 81.4 95.2 165.3 REMARK 620 5 HOH A1154 O 164.6 95.4 109.6 84.5 REMARK 620 6 HOH A1179 O 94.0 168.6 82.2 93.3 92.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1006 DBREF 6FAC A 270 921 UNP G0SEG4 G0SEG4_CHATD 270 921 SEQADV 6FAC GLY A 267 UNP G0SEG4 EXPRESSION TAG SEQADV 6FAC PRO A 268 UNP G0SEG4 EXPRESSION TAG SEQADV 6FAC MET A 269 UNP G0SEG4 EXPRESSION TAG SEQRES 1 A 655 GLY PRO MET THR PRO GLU GLN ARG LEU LEU LYS GLN LYS SEQRES 2 A 655 ILE GLU GLU ALA GLU ARG ALA GLN ARG THR ILE GLN GLU SEQRES 3 A 655 VAL ARG LYS SER LEU PRO VAL TYR ALA TYR ARG ASP ALA SEQRES 4 A 655 PHE LEU ASP ALA VAL LYS GLU TYR GLN VAL LEU ILE LEU SEQRES 5 A 655 VAL GLY GLU THR GLY SER GLY LYS THR THR GLN ILE PRO SEQRES 6 A 655 GLN TYR LEU HIS GLU ALA GLY TYR THR LYS GLY ASN ARG SEQRES 7 A 655 LYS ILE ALA CYS THR GLN PRO ARG ARG VAL ALA ALA MET SEQRES 8 A 655 SER VAL ALA ALA ARG VAL ALA ASP GLU MET GLY VAL ARG SEQRES 9 A 655 LEU GLY HIS GLU VAL GLY TYR SER ILE ARG PHE GLU ASP SEQRES 10 A 655 CYS THR SER GLU LYS THR ILE LEU LYS TYR MET THR ASP SEQRES 11 A 655 GLY MET LEU LEU ARG GLU MET VAL THR SER PRO ASP LEU SEQRES 12 A 655 ALA ASP TYR SER CYS ILE MET ILE ASP GLU ALA HIS GLU SEQRES 13 A 655 ARG THR VAL HIS THR ASP ILE LEU LEU ALA LEU ILE LYS SEQRES 14 A 655 ASP LEU THR ARG ALA ARG PRO GLU LEU ARG LEU ILE ILE SEQRES 15 A 655 SER SER ALA THR LEU ASN ALA GLU LYS PHE SER ALA TYR SEQRES 16 A 655 PHE ASP ASP ALA PRO ILE PHE ASN VAL PRO GLY ARG VAL SEQRES 17 A 655 HIS PRO VAL GLU VAL TYR TYR THR SER ALA PRO GLU SER SEQRES 18 A 655 ASN TYR LEU GLU ALA ALA LEU VAL THR VAL PHE GLN ILE SEQRES 19 A 655 HIS ALA THR GLN PRO GLU GLY ASP ILE LEU VAL PHE LEU SEQRES 20 A 655 THR GLY GLN GLU GLU ILE GLU ARG ALA CYS GLU ARG VAL SEQRES 21 A 655 GLU GLU ILE ARG ARG LYS LEU GLY LYS ARG VAL PRO GLU SEQRES 22 A 655 ILE ILE ALA LEU PRO ILE TYR SER ASN MET PRO SER GLU SEQRES 23 A 655 MET GLN ALA LYS ILE PHE GLU PRO THR PRO PRO GLY ALA SEQRES 24 A 655 ARG LYS VAL VAL PHE SER THR ASN ILE ALA GLU THR SER SEQRES 25 A 655 LEU THR ILE ASP GLY ILE VAL TYR VAL ILE ASP SER GLY SEQRES 26 A 655 TYR VAL LYS GLU ASN THR PHE SER PRO VAL GLY THR THR SEQRES 27 A 655 GLY GLN SER THR LEU ALA VAL VAL PRO CYS SER ARG ALA SEQRES 28 A 655 ALA ALA ASN GLN ARG MET GLY ARG ALA GLY ARG VAL LYS SEQRES 29 A 655 PRO GLY LYS CYS PHE ARG LEU TYR THR LYS TYR ALA TYR SEQRES 30 A 655 LEU SER GLU MET ASP GLU SER PRO THR PRO GLU ILE GLN SEQRES 31 A 655 ARG THR SER LEU SER SER VAL VAL LEU GLN LEU LYS ALA SEQRES 32 A 655 LEU GLY ILE ASP ASP LEU LEU GLY PHE ASP PHE LEU ASP SEQRES 33 A 655 PRO PRO PRO THR GLU LEU LEU ILE LYS SER LEU ASN MET SEQRES 34 A 655 LEU TYR ALA LEU GLY ALA LEU ASN SER ALA GLY GLN LEU SEQRES 35 A 655 THR ARG VAL GLY ARG GLN MET GLY GLU PHE PRO THR GLU SEQRES 36 A 655 PRO MET LEU ALA LYS ALA LEU ILE ALA ALA THR GLN GLU SEQRES 37 A 655 GLY CYS VAL SER GLU VAL LEU THR ILE VAL SER MET LEU SEQRES 38 A 655 GLY GLU VAL GLY THR LEU PHE PHE ARG PRO LYS ASP LYS SEQRES 39 A 655 LYS VAL HIS ALA ASP SER ALA ARG ALA ARG PHE THR VAL SEQRES 40 A 655 ARG ASP GLY GLY ASP HIS LEU THR LEU LEU ASN ILE TYR SEQRES 41 A 655 ASN GLN TRP VAL GLU ALA GLU TYR SER PRO ILE TRP ALA SEQRES 42 A 655 ARG GLU ASN PHE LEU ALA GLN ARG SER LEU THR ARG ALA SEQRES 43 A 655 ARG ASP VAL ARG ASP GLN LEU ALA LYS LEU CYS ASP ARG SEQRES 44 A 655 ILE LEU ASP GLY SER GLU ALA SER CYS GLY GLY VAL ASN SEQRES 45 A 655 ASN PRO THR PRO ILE LEU ARG ALA LEU THR ALA ALA PHE SEQRES 46 A 655 PHE LEU ASN ALA ALA ARG LEU ASN ARG ALA GLY ASP GLY SEQRES 47 A 655 TYR ARG THR LEU LYS ASN ASN ILE THR VAL TYR VAL HIS SEQRES 48 A 655 PRO SER SER VAL VAL ARG GLY MET ASP PRO PRO PRO LYS SEQRES 49 A 655 VAL ILE ILE TYR HIS GLU LEU VAL VAL THR SER LYS GLU SEQRES 50 A 655 TYR VAL ARG SER VAL ILE PRO VAL GLU PRO ARG TRP LEU SEQRES 51 A 655 SER GLU PHE GLY ALA HET ADP A1001 27 HET MG A1002 1 HET CL A1003 1 HET CL A1004 1 HET CL A1005 1 HET CL A1006 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 CL 4(CL 1-) FORMUL 8 HOH *222(H2 O) HELIX 1 AA1 THR A 270 SER A 296 1 27 HELIX 2 AA2 VAL A 299 ALA A 301 5 3 HELIX 3 AA3 TYR A 302 TYR A 313 1 12 HELIX 4 AA4 GLY A 325 GLY A 338 1 14 HELIX 5 AA5 ARG A 352 MET A 367 1 16 HELIX 6 AA6 ASP A 396 SER A 406 1 11 HELIX 7 AA7 GLU A 419 ARG A 423 5 5 HELIX 8 AA8 THR A 424 ARG A 441 1 18 HELIX 9 AA9 ALA A 451 LEU A 453 5 3 HELIX 10 AB1 ASN A 454 PHE A 462 1 9 HELIX 11 AB2 ASN A 488 GLN A 504 1 17 HELIX 12 AB3 GLY A 515 GLY A 534 1 20 HELIX 13 AB4 LYS A 535 VAL A 537 5 3 HELIX 14 AB5 PRO A 550 GLU A 559 1 10 HELIX 15 AB6 ASN A 573 SER A 578 1 6 HELIX 16 AB7 SER A 615 ARG A 625 1 11 HELIX 17 AB8 THR A 639 SER A 645 1 7 HELIX 18 AB9 PRO A 653 ARG A 657 5 5 HELIX 19 AC1 LEU A 660 LEU A 670 1 11 HELIX 20 AC2 PRO A 685 LEU A 699 1 15 HELIX 21 AC3 THR A 709 GLU A 717 1 9 HELIX 22 AC4 GLU A 721 GLY A 735 1 15 HELIX 23 AC5 CYS A 736 GLY A 748 1 13 HELIX 24 AC6 LYS A 761 PHE A 771 1 11 HELIX 25 AC7 GLY A 776 ALA A 792 1 17 HELIX 26 AC8 SER A 795 ASN A 802 1 8 HELIX 27 AC9 ALA A 805 LEU A 827 1 23 HELIX 28 AD1 ASN A 839 PHE A 852 1 14 HELIX 29 AD2 SER A 880 MET A 885 5 6 HELIX 30 AD3 GLU A 912 GLY A 920 1 9 SHEET 1 AA1 8 GLU A 382 CYS A 384 0 SHEET 2 AA1 8 VAL A 375 ILE A 379 -1 N ILE A 379 O GLU A 382 SHEET 3 AA1 8 LEU A 391 THR A 395 1 O TYR A 393 N GLY A 376 SHEET 4 AA1 8 LYS A 345 GLN A 350 1 N ILE A 346 O LYS A 392 SHEET 5 AA1 8 TYR A 412 ILE A 417 1 O MET A 416 N ALA A 347 SHEET 6 AA1 8 ARG A 445 SER A 450 1 O ARG A 445 N ILE A 415 SHEET 7 AA1 8 VAL A 315 GLY A 320 1 N LEU A 316 O ILE A 448 SHEET 8 AA1 8 ILE A 467 VAL A 470 1 O VAL A 470 N VAL A 319 SHEET 1 AA2 6 VAL A 477 TYR A 480 0 SHEET 2 AA2 6 GLY A 632 ARG A 636 1 O ARG A 636 N TYR A 480 SHEET 3 AA2 6 ILE A 584 ASP A 589 1 N VAL A 587 O PHE A 635 SHEET 4 AA2 6 ASP A 508 PHE A 512 1 N PHE A 512 O ILE A 588 SHEET 5 AA2 6 ARG A 566 SER A 571 1 O VAL A 569 N VAL A 511 SHEET 6 AA2 6 ILE A 540 ILE A 545 1 N ILE A 541 O VAL A 568 SHEET 1 AA3 8 TYR A 592 SER A 599 0 SHEET 2 AA3 8 GLN A 606 PRO A 613 -1 O ALA A 610 N GLU A 595 SHEET 3 AA3 8 VAL A 891 VAL A 899 1 O VAL A 899 N LEU A 609 SHEET 4 AA3 8 GLU A 903 PRO A 910 -1 O ARG A 906 N GLU A 896 SHEET 5 AA3 8 THR A 873 VAL A 876 1 N TYR A 875 O VAL A 905 SHEET 6 AA3 8 TYR A 865 THR A 867 -1 N TYR A 865 O VAL A 874 SHEET 7 AA3 8 ALA A 855 LEU A 858 -1 N ARG A 857 O ARG A 866 SHEET 8 AA3 8 VAL A 891 VAL A 899 -1 O ILE A 892 N ALA A 856 LINK OG1 THR A 327 MG MG A1002 1555 1555 2.02 LINK O3B ADP A1001 MG MG A1002 1555 1555 2.14 LINK MG MG A1002 O HOH A1104 1555 1555 2.11 LINK MG MG A1002 O HOH A1138 1555 1555 2.23 LINK MG MG A1002 O HOH A1154 1555 1555 2.05 LINK MG MG A1002 O HOH A1179 1555 1555 2.32 SITE 1 AC1 16 THR A 322 GLY A 323 SER A 324 GLY A 325 SITE 2 AC1 16 LYS A 326 THR A 327 THR A 328 SER A 358 SITE 3 AC1 16 ARG A 362 PHE A 558 THR A 580 ASP A 582 SITE 4 AC1 16 MG A1002 HOH A1102 HOH A1104 HOH A1154 SITE 1 AC2 7 THR A 327 GLU A 419 ADP A1001 HOH A1104 SITE 2 AC2 7 HOH A1138 HOH A1154 HOH A1179 SITE 1 AC3 5 ARG A 352 ARG A 353 VAL A 354 SER A 547 SITE 2 AC3 5 ILE A 574 SITE 1 AC4 4 MET A 695 GLU A 721 PRO A 722 MET A 723 SITE 1 AC5 1 ALA A 337 CRYST1 122.740 67.320 95.620 90.00 106.46 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008147 0.000000 0.002408 0.00000 SCALE2 0.000000 0.014854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010905 0.00000