HEADER TRANSCRIPTION 16-DEC-17 6FAP TITLE CRYSTAL STRUCTURE OF HUMAN BAZ2A PHD ZINC FINGER IN COMPLEX WITH FR23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRANSCRIPTION TERMINATION FACTOR I-INTERACTING PROTEIN 5, COMPND 5 TIP5,HWALP3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAZ2A, KIAA0314, TIP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.AMATO,X.LUCAS,A.BORTOLUZZI,D.WRIGHT,A.CIULLI REVDAT 4 17-JAN-24 6FAP 1 REMARK REVDAT 3 02-MAY-18 6FAP 1 JRNL REVDAT 2 28-MAR-18 6FAP 1 JRNL REVDAT 1 21-MAR-18 6FAP 0 JRNL AUTH A.AMATO,X.LUCAS,A.BORTOLUZZI,D.WRIGHT,A.CIULLI JRNL TITL TARGETING LIGANDABLE POCKETS ON PLANT HOMEODOMAIN (PHD) ZINC JRNL TITL 2 FINGER DOMAINS BY A FRAGMENT-BASED APPROACH. JRNL REF ACS CHEM. BIOL. V. 13 915 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29529862 JRNL DOI 10.1021/ACSCHEMBIO.7B01093 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 7407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 401 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 524 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.87000 REMARK 3 B22 (A**2) : 1.87000 REMARK 3 B33 (A**2) : -3.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.881 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.772 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1700 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1495 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2286 ; 0.746 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3428 ; 0.641 ; 3.022 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 205 ; 7.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;34.504 ;23.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;12.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.313 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1843 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 343 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 832 ; 1.191 ; 4.763 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 831 ; 1.190 ; 4.762 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1033 ; 2.011 ; 7.135 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1034 ; 2.011 ; 7.135 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 868 ; 1.689 ; 4.995 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 869 ; 1.688 ; 4.999 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1254 ; 2.294 ; 7.428 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1714 ; 3.612 ;54.372 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1714 ; 3.612 ;54.365 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1676 A 1728 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7588 32.9035 19.7191 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.0929 REMARK 3 T33: 0.0868 T12: 0.0173 REMARK 3 T13: 0.0378 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 6.0335 L22: 5.7783 REMARK 3 L33: 7.1187 L12: -2.7088 REMARK 3 L13: 4.1859 L23: -1.8861 REMARK 3 S TENSOR REMARK 3 S11: 0.2607 S12: 0.5026 S13: -0.3228 REMARK 3 S21: -0.5265 S22: -0.2730 S23: -0.0920 REMARK 3 S31: 0.4133 S32: 0.5003 S33: 0.0122 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1676 B 1726 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3650 24.6614 45.5144 REMARK 3 T TENSOR REMARK 3 T11: 0.0324 T22: 0.0848 REMARK 3 T33: 0.0866 T12: 0.0095 REMARK 3 T13: 0.0236 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 6.1368 L22: 7.9321 REMARK 3 L33: 6.7779 L12: 0.8227 REMARK 3 L13: -1.8746 L23: 1.2744 REMARK 3 S TENSOR REMARK 3 S11: -0.1631 S12: -0.2673 S13: -0.1468 REMARK 3 S21: -0.0778 S22: 0.0396 S23: -0.5416 REMARK 3 S31: 0.1693 S32: 0.6087 S33: 0.1235 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1676 C 1727 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3922 38.6758 34.5627 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0388 REMARK 3 T33: 0.0675 T12: 0.0158 REMARK 3 T13: -0.0128 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 4.5224 L22: 6.9887 REMARK 3 L33: 5.6059 L12: 0.0882 REMARK 3 L13: -1.8248 L23: -1.3977 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.0838 S13: 0.1042 REMARK 3 S21: 0.1783 S22: -0.1918 S23: -0.1443 REMARK 3 S31: 0.0813 S32: 0.2376 S33: 0.1876 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1676 D 1728 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7478 23.5418 30.2127 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.0544 REMARK 3 T33: 0.1007 T12: 0.0105 REMARK 3 T13: 0.0741 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 5.9561 L22: 5.6756 REMARK 3 L33: 6.9309 L12: 3.8444 REMARK 3 L13: -2.1876 L23: -3.5419 REMARK 3 S TENSOR REMARK 3 S11: -0.2622 S12: 0.3969 S13: -0.3532 REMARK 3 S21: -0.5330 S22: 0.0333 S23: -0.2762 REMARK 3 S31: 0.4458 S32: 0.2005 S33: 0.2288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4QF2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM/ POTASSIUM PHOSPHATE, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.81500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.39800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.39800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.72250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.39800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.39800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.90750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.39800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.39800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.72250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.39800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.39800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.90750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.81500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1671 REMARK 465 MET A 1672 REMARK 465 SER A 1673 REMARK 465 VAL A 1674 REMARK 465 ASN A 1675 REMARK 465 HIS B 1671 REMARK 465 MET B 1672 REMARK 465 SER B 1673 REMARK 465 VAL B 1674 REMARK 465 ASN B 1675 REMARK 465 GLN B 1727 REMARK 465 VAL B 1728 REMARK 465 HIS C 1671 REMARK 465 MET C 1672 REMARK 465 SER C 1673 REMARK 465 VAL C 1674 REMARK 465 ASN C 1675 REMARK 465 VAL C 1728 REMARK 465 HIS D 1671 REMARK 465 MET D 1672 REMARK 465 SER D 1673 REMARK 465 VAL D 1674 REMARK 465 ASN D 1675 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1676 CG CD CE NZ REMARK 470 ARG A1683 NE CZ NH1 NH2 REMARK 470 LYS A1684 CD CE NZ REMARK 470 GLU A1689 CD OE1 OE2 REMARK 470 LYS B1676 CB CG CD CE NZ REMARK 470 ARG B1683 CG CD NE CZ NH1 NH2 REMARK 470 LYS C1709 CG CD CE NZ REMARK 470 GLN C1727 CG CD OE1 NE2 REMARK 470 GLU D1715 CG CD OE1 OE2 REMARK 470 ASP D1717 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A1697 -158.25 -149.34 REMARK 500 ASN D1687 60.61 60.11 REMARK 500 CYS D1697 -167.55 -163.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1679 SG REMARK 620 2 CYS A1682 SG 102.1 REMARK 620 3 HIS A1702 ND1 98.7 100.6 REMARK 620 4 CYS A1705 SG 119.2 112.7 120.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1694 SG REMARK 620 2 CYS A1697 SG 103.8 REMARK 620 3 CYS A1720 SG 115.6 110.3 REMARK 620 4 CYS A1723 SG 97.8 111.5 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1679 SG REMARK 620 2 CYS B1682 SG 104.0 REMARK 620 3 HIS B1702 ND1 104.4 100.7 REMARK 620 4 CYS B1705 SG 116.4 111.8 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1694 SG REMARK 620 2 CYS B1697 SG 107.0 REMARK 620 3 CYS B1720 SG 114.6 107.4 REMARK 620 4 CYS B1723 SG 104.8 110.4 112.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1679 SG REMARK 620 2 CYS C1682 SG 97.6 REMARK 620 3 HIS C1702 ND1 100.6 102.9 REMARK 620 4 CYS C1705 SG 119.2 112.2 120.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1694 SG REMARK 620 2 CYS C1697 SG 106.3 REMARK 620 3 CYS C1720 SG 116.2 103.8 REMARK 620 4 CYS C1723 SG 103.0 113.4 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D1679 SG REMARK 620 2 CYS D1682 SG 99.2 REMARK 620 3 HIS D1702 ND1 101.7 102.8 REMARK 620 4 CYS D1705 SG 117.2 113.9 119.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D1694 SG REMARK 620 2 CYS D1697 SG 106.4 REMARK 620 3 CYS D1720 SG 120.0 108.6 REMARK 620 4 CYS D1723 SG 97.3 108.7 114.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D3H B 1804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D3H C 1804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 1803 DBREF 6FAP A 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 6FAP B 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 6FAP C 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 6FAP D 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 SEQADV 6FAP HIS A 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FAP MET A 1672 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FAP HIS B 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FAP MET B 1672 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FAP HIS C 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FAP MET C 1672 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FAP HIS D 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FAP MET D 1672 UNP Q9UIF9 EXPRESSION TAG SEQRES 1 A 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 A 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 A 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 A 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 A 58 CYS LEU ALA GLN GLN VAL SEQRES 1 B 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 B 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 B 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 B 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 B 58 CYS LEU ALA GLN GLN VAL SEQRES 1 C 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 C 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 C 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 C 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 C 58 CYS LEU ALA GLN GLN VAL SEQRES 1 D 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 D 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 D 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 D 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 D 58 CYS LEU ALA GLN GLN VAL HET ZN A1801 1 HET ZN A1802 1 HET PO4 A1803 5 HET ZN B1801 1 HET ZN B1802 1 HET PO4 B1803 5 HET D3H B1804 12 HET ZN C1801 1 HET ZN C1802 1 HET GOL C1803 6 HET D3H C1804 12 HET ZN D1801 1 HET ZN D1802 1 HET PO4 D1803 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM D3H ~{N}-(4-AMINOPHENYL)-2-AZANYL-ETHANAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN 8(ZN 2+) FORMUL 7 PO4 3(O4 P 3-) FORMUL 11 D3H 2(C8 H11 N3 O) FORMUL 14 GOL C3 H8 O3 FORMUL 19 HOH *26(H2 O) HELIX 1 AA1 ASN A 1687 GLU A 1689 5 3 HELIX 2 AA2 CYS A 1720 ALA A 1725 1 6 HELIX 3 AA3 ASN B 1687 GLU B 1689 5 3 HELIX 4 AA4 CYS B 1720 ALA B 1725 1 6 HELIX 5 AA5 ASN C 1687 GLU C 1689 5 3 HELIX 6 AA6 CYS C 1720 GLN C 1727 1 8 HELIX 7 AA7 ASN D 1687 GLU D 1689 5 3 HELIX 8 AA8 CYS D 1720 ALA D 1725 1 6 SHEET 1 AA1 2 LEU A1691 LEU A1693 0 SHEET 2 AA1 2 GLY A1700 HIS A1702 -1 O CYS A1701 N LEU A1692 SHEET 1 AA2 2 LEU B1691 LEU B1693 0 SHEET 2 AA2 2 GLY B1700 HIS B1702 -1 O CYS B1701 N LEU B1692 SHEET 1 AA3 2 LEU C1691 LEU C1693 0 SHEET 2 AA3 2 GLY C1700 HIS C1702 -1 O CYS C1701 N LEU C1692 SHEET 1 AA4 2 LEU D1691 LEU D1693 0 SHEET 2 AA4 2 GLY D1700 HIS D1702 -1 O CYS D1701 N LEU D1692 LINK SG CYS A1679 ZN ZN A1801 1555 1555 2.33 LINK SG CYS A1682 ZN ZN A1801 1555 1555 2.34 LINK SG CYS A1694 ZN ZN A1802 1555 1555 2.33 LINK SG CYS A1697 ZN ZN A1802 1555 1555 2.33 LINK ND1 HIS A1702 ZN ZN A1801 1555 1555 2.01 LINK SG CYS A1705 ZN ZN A1801 1555 1555 2.34 LINK SG CYS A1720 ZN ZN A1802 1555 1555 2.34 LINK SG CYS A1723 ZN ZN A1802 1555 1555 2.34 LINK SG CYS B1679 ZN ZN B1801 1555 1555 2.34 LINK SG CYS B1682 ZN ZN B1801 1555 1555 2.33 LINK SG CYS B1694 ZN ZN B1802 1555 1555 2.34 LINK SG CYS B1697 ZN ZN B1802 1555 1555 2.34 LINK ND1 HIS B1702 ZN ZN B1801 1555 1555 2.06 LINK SG CYS B1705 ZN ZN B1801 1555 1555 2.34 LINK SG CYS B1720 ZN ZN B1802 1555 1555 2.34 LINK SG CYS B1723 ZN ZN B1802 1555 1555 2.34 LINK SG CYS C1679 ZN ZN C1801 1555 1555 2.34 LINK SG CYS C1682 ZN ZN C1801 1555 1555 2.33 LINK SG CYS C1694 ZN ZN C1802 1555 1555 2.34 LINK SG CYS C1697 ZN ZN C1802 1555 1555 2.34 LINK ND1 HIS C1702 ZN ZN C1801 1555 1555 2.01 LINK SG CYS C1705 ZN ZN C1801 1555 1555 2.33 LINK SG CYS C1720 ZN ZN C1802 1555 1555 2.34 LINK SG CYS C1723 ZN ZN C1802 1555 1555 2.34 LINK SG CYS D1679 ZN ZN D1801 1555 1555 2.34 LINK SG CYS D1682 ZN ZN D1801 1555 1555 2.33 LINK SG CYS D1694 ZN ZN D1802 1555 1555 2.33 LINK SG CYS D1697 ZN ZN D1802 1555 1555 2.33 LINK ND1 HIS D1702 ZN ZN D1801 1555 1555 2.04 LINK SG CYS D1705 ZN ZN D1801 1555 1555 2.33 LINK SG CYS D1720 ZN ZN D1802 1555 1555 2.34 LINK SG CYS D1723 ZN ZN D1802 1555 1555 2.33 CISPEP 1 ARG A 1707 PRO A 1708 0 11.87 CISPEP 2 ARG B 1707 PRO B 1708 0 19.46 CISPEP 3 ARG C 1707 PRO C 1708 0 10.35 CISPEP 4 ARG D 1707 PRO D 1708 0 8.68 SITE 1 AC1 4 CYS A1679 CYS A1682 HIS A1702 CYS A1705 SITE 1 AC2 4 CYS A1694 CYS A1697 CYS A1720 CYS A1723 SITE 1 AC3 3 ARG A1707 HOH A1904 HOH A1906 SITE 1 AC4 4 CYS B1679 CYS B1682 HIS B1702 CYS B1705 SITE 1 AC5 4 CYS B1694 CYS B1697 CYS B1720 CYS B1723 SITE 1 AC6 1 ARG B1707 SITE 1 AC7 4 GLU B1689 LEU B1692 LEU B1693 ASP B1695 SITE 1 AC8 4 CYS C1679 CYS C1682 HIS C1702 CYS C1705 SITE 1 AC9 4 CYS C1694 CYS C1697 CYS C1720 CYS C1723 SITE 1 AD1 1 ARG C1707 SITE 1 AD2 5 GLU C1689 LEU C1691 LEU C1693 ASP C1695 SITE 2 AD2 5 GLY C1716 SITE 1 AD3 4 CYS D1679 CYS D1682 HIS D1702 CYS D1705 SITE 1 AD4 4 CYS D1694 CYS D1697 CYS D1720 CYS D1723 SITE 1 AD5 2 ARG D1707 LYS D1709 CRYST1 72.796 72.796 99.630 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013737 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010037 0.00000