HEADER DNA BINDING PROTEIN 17-DEC-17 6FAS TITLE CRYSTAL STRUCTURE OF VAL1 B3 DOMAIN IN COMPLEX WITH COGNATE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE 2,PROTEIN COMPND 5 VP1/ABI3-LIKE 1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ONE CYSTEINE FORMS AN ADDUCT WITH 2-MERCAPTOETHANOL. COMPND 8 THE RESULTANT ADDUCT IS CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*AP*GP*CP*CP*AP*TP*GP*CP*AP*CP*CP*G)-3'); COMPND 11 CHAIN: C, E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*GP*GP*TP*GP*CP*AP*TP*GP*GP*CP*T)-3'); COMPND 15 CHAIN: D, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: VAL1, HSI2, AT2G30470, T6B20.17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLATE31; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS B3 DNA BINDING DOMAIN, VAL1 TRANSCRIPTIONAL REGULATOR, EPIGENOME KEYWDS 2 READER, COMPLEX, SPECIFIC DNA RECOGNITION, SPH/RY SEQUENCE, DNA KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.SASNAUSKAS REVDAT 3 16-MAY-18 6FAS 1 JRNL REVDAT 2 25-APR-18 6FAS 1 JRNL REVDAT 1 18-APR-18 6FAS 0 JRNL AUTH G.SASNAUSKAS,K.KAUNECKAITE,V.SIKSNYS JRNL TITL STRUCTURAL BASIS OF DNA TARGET RECOGNITION BY THE B3 DOMAIN JRNL TITL 2 OF ARABIDOPSIS EPIGENOME READER VAL1. JRNL REF NUCLEIC ACIDS RES. V. 46 4316 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29660015 JRNL DOI 10.1093/NAR/GKY256 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.860 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 66958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 6729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2997 - 5.8989 0.99 1999 268 0.1700 0.1896 REMARK 3 2 5.8989 - 4.6840 0.99 2067 212 0.1398 0.1654 REMARK 3 3 4.6840 - 4.0924 0.99 2048 226 0.1370 0.1641 REMARK 3 4 4.0924 - 3.7185 0.98 2028 224 0.1504 0.1881 REMARK 3 5 3.7185 - 3.4521 0.97 2009 198 0.1494 0.2108 REMARK 3 6 3.4521 - 3.2486 0.95 1977 230 0.1736 0.2122 REMARK 3 7 3.2486 - 3.0859 0.97 1943 224 0.1761 0.2299 REMARK 3 8 3.0859 - 2.9516 0.99 2060 249 0.1955 0.2445 REMARK 3 9 2.9516 - 2.8380 0.98 2006 228 0.1809 0.2252 REMARK 3 10 2.8380 - 2.7401 0.96 1994 236 0.1872 0.2672 REMARK 3 11 2.7401 - 2.6545 0.98 1999 221 0.1948 0.2499 REMARK 3 12 2.6545 - 2.5786 0.98 2064 221 0.1895 0.2443 REMARK 3 13 2.5786 - 2.5107 0.98 1956 224 0.1940 0.2779 REMARK 3 14 2.5107 - 2.4495 0.98 2107 209 0.1867 0.2716 REMARK 3 15 2.4495 - 2.3938 0.97 1970 242 0.1779 0.2465 REMARK 3 16 2.3938 - 2.3428 0.97 1987 249 0.1770 0.2303 REMARK 3 17 2.3428 - 2.2960 0.98 2106 199 0.1839 0.2911 REMARK 3 18 2.2960 - 2.2527 0.97 1959 205 0.1818 0.2454 REMARK 3 19 2.2527 - 2.2124 0.97 1978 221 0.1759 0.2426 REMARK 3 20 2.2124 - 2.1749 0.97 2019 224 0.1715 0.2626 REMARK 3 21 2.1749 - 2.1398 0.96 2001 239 0.1890 0.2623 REMARK 3 22 2.1398 - 2.1069 0.97 1919 253 0.1948 0.2631 REMARK 3 23 2.1069 - 2.0759 0.97 2028 257 0.1924 0.2506 REMARK 3 24 2.0759 - 2.0467 0.97 1989 223 0.2057 0.2788 REMARK 3 25 2.0467 - 2.0190 0.96 1966 217 0.2116 0.2901 REMARK 3 26 2.0190 - 1.9928 0.97 2004 214 0.2094 0.2406 REMARK 3 27 1.9928 - 1.9679 0.96 2012 222 0.2249 0.2753 REMARK 3 28 1.9679 - 1.9442 0.97 2043 209 0.2388 0.2837 REMARK 3 29 1.9442 - 1.9216 0.96 1992 168 0.2544 0.3367 REMARK 3 30 1.9216 - 1.9000 0.97 1999 217 0.2383 0.3098 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2845 REMARK 3 ANGLE : 1.322 4049 REMARK 3 CHIRALITY : 0.070 447 REMARK 3 PLANARITY : 0.008 356 REMARK 3 DIHEDRAL : 23.810 1535 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66958 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.02940 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: STRUCTURAL MODELS OF VAL1-B3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM ACETATE 0.085 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE PH 5.6 25.5% W/V POLYETHYLENE GLYCOL REMARK 280 4,000 15% V/V GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.28850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 397 REMARK 465 GLY A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 GLY A 405 REMARK 465 ASN B 397 REMARK 465 GLY B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 GLY B 405 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 MET B 287 CG SD CE REMARK 470 ARG B 306 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 110 O HOH D 101 1.97 REMARK 500 OE2 GLU B 341 O HOH B 501 2.10 REMARK 500 O HOH E 108 O HOH F 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 6 O3' DT C 6 C3' -0.068 REMARK 500 DC D 1 O3' DC D 1 C3' -0.038 REMARK 500 DG E 2 O3' DG E 2 C3' -0.041 REMARK 500 DT E 6 O3' DT E 6 C3' -0.059 REMARK 500 DG F 3 O3' DG F 3 C3' -0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 2 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT D 12 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG E 2 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC E 10 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG F 3 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DT F 12 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 294 -61.73 -105.40 REMARK 500 ASN A 352 -124.91 49.15 REMARK 500 SER A 354 -153.70 -116.08 REMARK 500 LEU B 294 -62.47 -102.32 REMARK 500 ASN B 352 -129.36 52.33 REMARK 500 SER B 354 -154.83 -121.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 6FAS A 288 397 UNP Q8W4L5 VAL1_ARATH 288 397 DBREF 6FAS B 288 397 UNP Q8W4L5 VAL1_ARATH 288 397 DBREF 6FAS C 1 12 PDB 6FAS 6FAS 1 12 DBREF 6FAS D 1 12 PDB 6FAS 6FAS 1 12 DBREF 6FAS E 1 12 PDB 6FAS 6FAS 1 12 DBREF 6FAS F 1 12 PDB 6FAS 6FAS 1 12 SEQADV 6FAS MET A 287 UNP Q8W4L5 INITIATING METHIONINE SEQADV 6FAS GLY A 398 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS A 399 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS A 400 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS A 401 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS A 402 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS A 403 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS A 404 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS GLY A 405 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS MET B 287 UNP Q8W4L5 INITIATING METHIONINE SEQADV 6FAS GLY B 398 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS B 399 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS B 400 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS B 401 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS B 402 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS B 403 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS HIS B 404 UNP Q8W4L5 EXPRESSION TAG SEQADV 6FAS GLY B 405 UNP Q8W4L5 EXPRESSION TAG SEQRES 1 A 119 MET ASN LEU ASN ILE VAL PRO LEU PHE GLU LYS THR LEU SEQRES 2 A 119 SER ALA SER ASP ALA GLY ARG ILE GLY ARG LEU VAL LEU SEQRES 3 A 119 PRO LYS ALA CME ALA GLU ALA TYR PHE PRO PRO ILE SER SEQRES 4 A 119 GLN SER GLU GLY ILE PRO LEU LYS ILE GLN ASP VAL ARG SEQRES 5 A 119 GLY ARG GLU TRP THR PHE GLN PHE ARG TYR TRP PRO ASN SEQRES 6 A 119 ASN ASN SER ARG MET TYR VAL LEU GLU GLY VAL THR PRO SEQRES 7 A 119 CYS ILE GLN SER MET MET LEU GLN ALA GLY ASP THR VAL SEQRES 8 A 119 THR PHE SER ARG VAL ASP PRO GLY GLY LYS LEU ILE MET SEQRES 9 A 119 GLY SER ARG LYS ALA ALA ASN GLY HIS HIS HIS HIS HIS SEQRES 10 A 119 HIS GLY SEQRES 1 B 119 MET ASN LEU ASN ILE VAL PRO LEU PHE GLU LYS THR LEU SEQRES 2 B 119 SER ALA SER ASP ALA GLY ARG ILE GLY ARG LEU VAL LEU SEQRES 3 B 119 PRO LYS ALA CME ALA GLU ALA TYR PHE PRO PRO ILE SER SEQRES 4 B 119 GLN SER GLU GLY ILE PRO LEU LYS ILE GLN ASP VAL ARG SEQRES 5 B 119 GLY ARG GLU TRP THR PHE GLN PHE ARG TYR TRP PRO ASN SEQRES 6 B 119 ASN ASN SER ARG MET TYR VAL LEU GLU GLY VAL THR PRO SEQRES 7 B 119 CYS ILE GLN SER MET MET LEU GLN ALA GLY ASP THR VAL SEQRES 8 B 119 THR PHE SER ARG VAL ASP PRO GLY GLY LYS LEU ILE MET SEQRES 9 B 119 GLY SER ARG LYS ALA ALA ASN GLY HIS HIS HIS HIS HIS SEQRES 10 B 119 HIS GLY SEQRES 1 C 12 DA DG DC DC DA DT DG DC DA DC DC DG SEQRES 1 D 12 DC DG DG DT DG DC DA DT DG DG DC DT SEQRES 1 E 12 DA DG DC DC DA DT DG DC DA DC DC DG SEQRES 1 F 12 DC DG DG DT DG DC DA DT DG DG DC DT MODRES 6FAS CME A 316 CYS MODIFIED RESIDUE MODRES 6FAS CME B 316 CYS MODIFIED RESIDUE HET CME A 316 10 HET CME B 316 10 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 7 HOH *193(H2 O) HELIX 1 AA1 SER A 300 GLY A 305 1 6 HELIX 2 AA2 PRO A 313 PHE A 321 1 9 HELIX 3 AA3 VAL A 362 MET A 369 1 8 HELIX 4 AA4 SER B 300 GLY B 305 1 6 HELIX 5 AA5 PRO B 313 PHE B 321 1 9 HELIX 6 AA6 VAL B 362 MET B 369 1 8 SHEET 1 AA1 7 ASN A 290 THR A 298 0 SHEET 2 AA1 7 THR A 376 ASP A 383 -1 O ARG A 381 N VAL A 292 SHEET 3 AA1 7 LYS A 387 ARG A 393 -1 O GLY A 391 N THR A 378 SHEET 4 AA1 7 ILE A 330 ASP A 336 1 N GLN A 335 O MET A 390 SHEET 5 AA1 7 GLU A 341 ASN A 351 -1 O PHE A 344 N LEU A 332 SHEET 6 AA1 7 SER A 354 GLU A 360 -1 O SER A 354 N ASN A 351 SHEET 7 AA1 7 ARG A 309 LEU A 312 -1 N LEU A 312 O TYR A 357 SHEET 1 AA2 7 ASN B 290 THR B 298 0 SHEET 2 AA2 7 THR B 376 ASP B 383 -1 O ASP B 383 N ASN B 290 SHEET 3 AA2 7 LYS B 387 ARG B 393 -1 O ILE B 389 N SER B 380 SHEET 4 AA2 7 ILE B 330 ASP B 336 1 N GLN B 335 O MET B 390 SHEET 5 AA2 7 GLU B 341 ASN B 351 -1 O PHE B 344 N LEU B 332 SHEET 6 AA2 7 SER B 354 GLU B 360 -1 O GLU B 360 N GLN B 345 SHEET 7 AA2 7 ARG B 309 LEU B 312 -1 N LEU B 312 O TYR B 357 LINK C ALA A 315 N CME A 316 1555 1555 1.34 LINK C CME A 316 N ALA A 317 1555 1555 1.33 LINK C ALA B 315 N CME B 316 1555 1555 1.33 LINK C CME B 316 N ALA B 317 1555 1555 1.33 CISPEP 1 ASP A 383 PRO A 384 0 -4.96 CISPEP 2 ASP B 383 PRO B 384 0 -6.45 CRYST1 40.091 86.577 65.160 90.00 94.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024943 0.000000 0.001805 0.00000 SCALE2 0.000000 0.011550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015387 0.00000