HEADER DNA BINDING PROTEIN 18-DEC-17 6FB2 TITLE CRYSTAL STRUCTURE OF A TAILORED I-CREI HOMING ENDONUCLEASE PROTEIN TITLE 2 (3115 VARIANT) IN COMPLEX WITH ITS TARGET DNA (HAEMOGLOBIN BETA TITLE 3 SUBUNIT GENE) IN THE PRESENCE OF MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ENDONUCLEASE I-CREI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 23S RRNA INTRON PROTEIN; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA ENDONUCLEASE I-CREI; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: 23S RRNA INTRON PROTEIN; COMPND 11 EC: 3.1.-.-; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*TP*CP*AP*GP*AP*CP*TP*TP*CP*TP*CP*CP*AP*C)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(*TP*CP*TP*GP*AP*CP*TP*CP*CP*TP*GP*TP*GP*G)-3'); COMPND 19 CHAIN: F; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: DNA (5'-D(P*AP*GP*GP*AP*GP*TP*CP*AP*GP*A)-3'); COMPND 23 CHAIN: E; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 6; COMPND 26 MOLECULE: DNA (5'-D(P*AP*GP*AP*AP*GP*TP*CP*TP*GP*A)-3'); COMPND 27 CHAIN: G; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 4 ORGANISM_TAXID: 3055; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 9 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 10 ORGANISM_TAXID: 3055; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630; SOURCE 21 MOL_ID: 5; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 24 ORGANISM_TAXID: 32630; SOURCE 25 MOL_ID: 6; SOURCE 26 SYNTHETIC: YES; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630 KEYWDS CHLAMYDOMONAS REINHARDTII, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.MOLINA,J.PRIETO REVDAT 2 17-JAN-24 6FB2 1 LINK REVDAT 1 18-JUL-18 6FB2 0 JRNL AUTH J.PRIETO,P.REDONDO,B.LOPEZ-MENDEZ,M.D'ABRAMO,N.MERINO, JRNL AUTH 2 F.J.BLANCO,P.DUCHATEAU,G.MONTOYA,R.MOLINA JRNL TITL UNDERSTANDING THE INDIRECT DNA READ-OUT SPECIFICITY OF JRNL TITL 2 I-CREI MEGANUCLEASE. JRNL REF SCI REP V. 8 10286 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29980759 JRNL DOI 10.1038/S41598-018-28599-0 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 11150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9903 - 5.8954 0.99 1323 147 0.1716 0.2063 REMARK 3 2 5.8954 - 4.6813 0.99 1287 144 0.1674 0.1981 REMARK 3 3 4.6813 - 4.0902 0.98 1261 140 0.1646 0.2155 REMARK 3 4 4.0902 - 3.7164 0.98 1256 140 0.1898 0.2608 REMARK 3 5 3.7164 - 3.4502 0.96 1234 137 0.1955 0.2780 REMARK 3 6 3.4502 - 3.2469 0.95 1224 134 0.2129 0.2562 REMARK 3 7 3.2469 - 3.0843 0.96 1234 137 0.2530 0.3126 REMARK 3 8 3.0843 - 2.9501 0.96 1216 136 0.2759 0.3133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3630 REMARK 3 ANGLE : 0.803 5109 REMARK 3 CHIRALITY : 0.046 584 REMARK 3 PLANARITY : 0.003 476 REMARK 3 DIHEDRAL : 21.866 1421 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 40.0367 -9.3240 202.9918 REMARK 3 T TENSOR REMARK 3 T11: 0.2192 T22: 0.2165 REMARK 3 T33: 0.1986 T12: -0.0165 REMARK 3 T13: -0.0315 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.4345 L22: 2.7382 REMARK 3 L33: 2.5760 L12: -0.2488 REMARK 3 L13: -0.3542 L23: 0.7827 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: 0.0517 S13: -0.0196 REMARK 3 S21: 0.2632 S22: -0.2520 S23: 0.0500 REMARK 3 S31: -0.0421 S32: -0.2189 S33: 0.1680 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.89 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 44.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1G9Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CALCIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6-5.4, 33-40% (V/V) 1,2-PROPANEDIOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.68100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, F, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 42 O HOH A 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA E 515 P DA E 515 OP3 -0.129 REMARK 500 DA G 615 P DA G 615 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA D 503 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA D 505 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC D 506 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG F 604 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC F 606 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG E 516 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG E 519 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG G 616 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -68.00 -95.78 REMARK 500 GLU A 117 -72.08 -84.76 REMARK 500 LYS A 142 -61.31 -125.39 REMARK 500 THR A 144 -169.96 -115.51 REMARK 500 SER B 70 49.49 -151.90 REMARK 500 GLN B 111 31.73 -97.27 REMARK 500 LYS B 139 -62.16 -126.43 REMARK 500 LYS B 142 -57.99 -134.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 19 O REMARK 620 2 ASP B 20 OD2 87.7 REMARK 620 3 DG F 614 OP1 156.5 81.8 REMARK 620 4 HOH F 701 O 84.7 74.6 72.3 REMARK 620 5 DA E 515 OP3 100.7 171.5 90.6 106.7 REMARK 620 6 DA E 515 P 97.8 141.0 103.6 144.2 37.6 REMARK 620 7 DA E 515 OP2 100.1 103.1 102.7 174.7 74.8 37.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP B 20 OD1 84.5 REMARK 620 3 DC D 514 O3' 77.9 157.1 REMARK 620 4 DG F 614 O3' 166.4 92.6 107.9 REMARK 620 5 DA E 515 OP2 90.4 84.8 80.8 102.6 REMARK 620 6 DA G 615 OP1 83.1 95.8 96.5 84.0 173.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD2 REMARK 620 2 HOH A 303 O 71.6 REMARK 620 3 GLY B 19 O 71.1 71.2 REMARK 620 4 DC D 514 OP1 79.7 88.5 148.4 REMARK 620 5 DA G 615 P 131.5 152.2 99.5 109.0 REMARK 620 6 DA G 615 OP1 87.9 154.2 87.7 103.4 43.7 REMARK 620 7 DA G 615 OP2 157.9 124.9 125.6 85.8 39.7 79.3 REMARK 620 8 DA G 615 O5' 130.4 120.8 69.7 141.6 34.8 61.6 57.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 203 DBREF 6FB2 A 2 154 UNP P05725 DNE1_CHLRE 2 154 DBREF 6FB2 B 2 155 UNP P05725 DNE1_CHLRE 2 155 DBREF 6FB2 D 501 514 PDB 6FB2 6FB2 501 514 DBREF 6FB2 F 601 614 PDB 6FB2 6FB2 601 614 DBREF 6FB2 E 515 524 PDB 6FB2 6FB2 515 524 DBREF 6FB2 G 615 624 PDB 6FB2 6FB2 615 624 SEQADV 6FB2 SER A 19 UNP P05725 GLY 19 CONFLICT SEQADV 6FB2 VAL A 33 UNP P05725 TYR 33 CONFLICT SEQADV 6FB2 ARG A 38 UNP P05725 GLN 38 CONFLICT SEQADV 6FB2 GLN A 40 UNP P05725 SER 40 CONFLICT SEQADV 6FB2 ASP A 44 UNP P05725 GLN 44 CONFLICT SEQADV 6FB2 ALA A 68 UNP P05725 ARG 68 CONFLICT SEQADV 6FB2 SER A 70 UNP P05725 ARG 70 CONFLICT SEQADV 6FB2 LYS A 75 UNP P05725 ASP 75 CONFLICT SEQADV 6FB2 ARG A 77 UNP P05725 ILE 77 CONFLICT SEQADV 6FB2 GLY B 33 UNP P05725 TYR 33 CONFLICT SEQADV 6FB2 LYS B 38 UNP P05725 GLN 38 CONFLICT SEQADV 6FB2 LYS B 44 UNP P05725 GLN 44 CONFLICT SEQADV 6FB2 TYR B 68 UNP P05725 ARG 68 CONFLICT SEQADV 6FB2 SER B 70 UNP P05725 ARG 70 CONFLICT SEQADV 6FB2 ASN B 75 UNP P05725 ASP 75 CONFLICT SEQADV 6FB2 TYR B 77 UNP P05725 ILE 77 CONFLICT SEQADV 6FB2 VAL B 132 UNP P05725 ILE 132 CONFLICT SEQRES 1 A 153 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 A 153 GLY PHE VAL ASP SER ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 A 153 LYS PRO ASN GLN SER VAL LYS PHE LYS HIS ARG LEU GLN SEQRES 4 A 153 LEU THR PHE ASP VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 A 153 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 A 153 VAL ALA ASP SER GLY SER VAL SER LYS TYR ARG LEU SER SEQRES 7 A 153 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 A 153 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 A 153 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 A 153 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 A 153 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 A 153 SER GLU THR VAL ARG ALA VAL LEU ASP SER SEQRES 1 B 154 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 B 154 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 B 154 LYS PRO ASN GLN SER GLY LYS PHE LYS HIS LYS LEU SER SEQRES 4 B 154 LEU THR PHE LYS VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 B 154 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 B 154 VAL TYR ASP SER GLY SER VAL SER ASN TYR TYR LEU SER SEQRES 7 B 154 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 B 154 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 B 154 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 B 154 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 B 154 VAL ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 B 154 SER GLU THR VAL ARG ALA VAL LEU ASP SER LEU SEQRES 1 D 14 DT DC DA DG DA DC DT DT DC DT DC DC DA SEQRES 2 D 14 DC SEQRES 1 F 14 DT DC DT DG DA DC DT DC DC DT DG DT DG SEQRES 2 F 14 DG SEQRES 1 E 10 DA DG DG DA DG DT DC DA DG DA SEQRES 1 G 10 DA DG DA DA DG DT DC DT DG DA HET MN A 201 1 HET MN A 202 1 HET MN A 203 1 HETNAM MN MANGANESE (II) ION FORMUL 7 MN 3(MN 2+) FORMUL 10 HOH *11(H2 O) HELIX 1 AA1 ASN A 6 ASP A 20 1 15 HELIX 2 AA2 ARG A 51 GLY A 63 1 13 HELIX 3 AA3 GLU A 80 GLN A 92 1 13 HELIX 4 AA4 PRO A 93 LEU A 95 5 3 HELIX 5 AA5 LYS A 98 GLN A 111 1 14 HELIX 6 AA6 SER A 118 ASN A 136 1 19 HELIX 7 AA7 THR A 144 LEU A 152 1 9 HELIX 8 AA8 ASN B 6 ASP B 20 1 15 HELIX 9 AA9 ARG B 51 GLY B 63 1 13 HELIX 10 AB1 GLU B 80 GLN B 92 1 13 HELIX 11 AB2 PRO B 93 LEU B 95 5 3 HELIX 12 AB3 LYS B 98 GLN B 111 1 14 HELIX 13 AB4 LEU B 112 GLU B 117 5 6 HELIX 14 AB5 SER B 118 ASN B 136 1 19 HELIX 15 AB6 THR B 144 ASP B 153 1 10 SHEET 1 AA1 4 GLY A 21 PRO A 29 0 SHEET 2 AA1 4 HIS A 37 LYS A 48 -1 O ASP A 44 N SER A 22 SHEET 3 AA1 4 VAL A 73 LEU A 78 -1 O SER A 74 N GLN A 47 SHEET 4 AA1 4 TYR A 66 ASP A 69 -1 N TYR A 66 O ARG A 77 SHEET 1 AA2 4 GLY B 21 PRO B 29 0 SHEET 2 AA2 4 HIS B 37 LYS B 48 -1 O LYS B 38 N LYS B 28 SHEET 3 AA2 4 VAL B 73 LEU B 78 -1 O TYR B 76 N VAL B 45 SHEET 4 AA2 4 TYR B 66 ASP B 69 -1 N TYR B 66 O TYR B 77 LINK O SER A 19 MN MN A 202 1555 1555 2.02 LINK OD1 ASP A 20 MN MN A 201 1555 1555 2.01 LINK OD2 ASP A 20 MN MN A 203 1555 1555 2.38 LINK MN MN A 201 OD1 ASP B 20 1555 1555 2.04 LINK MN MN A 201 O3' DC D 514 1555 1555 2.52 LINK MN MN A 201 O3' DG F 614 1555 1555 1.98 LINK MN MN A 201 OP2 DA E 515 1555 1555 2.26 LINK MN MN A 201 OP1 DA G 615 1555 1555 2.33 LINK MN MN A 202 OD2 ASP B 20 1555 1555 2.10 LINK MN MN A 202 OP1 DG F 614 1555 1555 2.05 LINK MN MN A 202 O HOH F 701 1555 1555 2.15 LINK MN MN A 202 OP3 DA E 515 1555 1555 2.10 LINK MN MN A 202 P DA E 515 1555 1555 2.40 LINK MN MN A 202 OP2 DA E 515 1555 1555 1.78 LINK MN MN A 203 O HOH A 303 1555 1555 1.75 LINK MN MN A 203 O GLY B 19 1555 1555 2.45 LINK MN MN A 203 OP1 DC D 514 1555 1555 2.08 LINK MN MN A 203 P DA G 615 1555 1555 2.12 LINK MN MN A 203 OP1 DA G 615 1555 1555 1.72 LINK MN MN A 203 OP2 DA G 615 1555 1555 2.22 LINK MN MN A 203 O5' DA G 615 1555 1555 2.78 SITE 1 AC1 7 ASP A 20 MN A 202 ASP B 20 DC D 514 SITE 2 AC1 7 DA E 515 DG F 614 DA G 615 SITE 1 AC2 6 SER A 19 MN A 201 ASP B 20 DA E 515 SITE 2 AC2 6 DG F 614 HOH F 701 SITE 1 AC3 5 ASP A 20 HOH A 303 GLY B 19 DC D 514 SITE 2 AC3 5 DA G 615 CRYST1 44.889 67.362 90.867 90.00 96.80 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022277 0.000000 0.002657 0.00000 SCALE2 0.000000 0.014845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011083 0.00000