HEADER DNA BINDING PROTEIN 18-DEC-17 6FB7 TITLE CRYSTAL STRUCTURE OF THE I-CREI HOMING ENDONUCLEASE D75N VARIANT IN TITLE 2 COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ENDONUCLEASE I-CREI; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 23S RRNA INTRON PROTEIN; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*TP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*AP*C)-3'); COMPND 9 CHAIN: D, F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*GP*AP*CP*GP*TP*TP*TP*TP*GP*A)-3'); COMPND 13 CHAIN: E, G; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 4 ORGANISM_TAXID: 3055; SOURCE 5 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 32630; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS CHLAMYDOMONAS REINHARDTII, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.MOLINA,J.PRIETO REVDAT 2 17-JAN-24 6FB7 1 LINK REVDAT 1 18-JUL-18 6FB7 0 JRNL AUTH J.PRIETO,P.REDONDO,B.LOPEZ-MENDEZ,M.D'ABRAMO,N.MERINO, JRNL AUTH 2 F.J.BLANCO,P.DUCHATEAU,G.MONTOYA,R.MOLINA JRNL TITL UNDERSTANDING THE INDIRECT DNA READ-OUT SPECIFICITY OF JRNL TITL 2 I-CREI MEGANUCLEASE. JRNL REF SCI REP V. 8 10286 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29980759 JRNL DOI 10.1038/S41598-018-28599-0 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.860 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 30910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0231 - 7.5256 1.00 1319 151 0.1515 0.1543 REMARK 3 2 7.5256 - 5.9767 1.00 1292 143 0.1484 0.2142 REMARK 3 3 5.9767 - 5.2222 1.00 1310 148 0.1409 0.1762 REMARK 3 4 5.2222 - 4.7451 1.00 1302 142 0.1303 0.1967 REMARK 3 5 4.7451 - 4.4053 1.00 1305 144 0.1266 0.1331 REMARK 3 6 4.4053 - 4.1457 1.00 1308 141 0.1264 0.1991 REMARK 3 7 4.1457 - 3.9382 1.00 1308 150 0.1441 0.1873 REMARK 3 8 3.9382 - 3.7668 1.00 1293 137 0.1510 0.1834 REMARK 3 9 3.7668 - 3.6218 0.58 776 82 0.1664 0.2295 REMARK 3 10 3.6218 - 3.4969 1.00 1287 140 0.1694 0.2055 REMARK 3 11 3.4969 - 3.3876 1.00 1337 151 0.1566 0.2176 REMARK 3 12 3.3876 - 3.2908 1.00 1276 145 0.1520 0.2316 REMARK 3 13 3.2908 - 3.2041 1.00 1296 149 0.1680 0.2184 REMARK 3 14 3.2041 - 3.1260 1.00 1324 148 0.1847 0.2884 REMARK 3 15 3.1260 - 3.0549 1.00 1267 148 0.2147 0.2525 REMARK 3 16 3.0549 - 2.9899 1.00 1312 144 0.2173 0.2451 REMARK 3 17 2.9899 - 2.9301 1.00 1325 152 0.2211 0.2461 REMARK 3 18 2.9301 - 2.8748 1.00 1265 134 0.2057 0.2912 REMARK 3 19 2.8748 - 2.8235 1.00 1335 150 0.2261 0.2961 REMARK 3 20 2.8235 - 2.7756 0.99 1294 142 0.2480 0.3361 REMARK 3 21 2.7756 - 2.7309 1.00 1289 146 0.2615 0.3465 REMARK 3 22 2.7309 - 2.6889 0.75 993 110 0.3243 0.4007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3630 REMARK 3 ANGLE : 0.992 5121 REMARK 3 CHIRALITY : 0.053 580 REMARK 3 PLANARITY : 0.004 476 REMARK 3 DIHEDRAL : 21.262 1418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.4782 192.7005 12.5499 REMARK 3 T TENSOR REMARK 3 T11: 0.2928 T22: 0.3267 REMARK 3 T33: 0.2415 T12: 0.0828 REMARK 3 T13: 0.0615 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 1.8625 L22: 1.9562 REMARK 3 L33: 2.0652 L12: -1.3057 REMARK 3 L13: 1.0541 L23: -0.9718 REMARK 3 S TENSOR REMARK 3 S11: -0.2495 S12: -0.1801 S13: -0.1225 REMARK 3 S21: 0.2191 S22: 0.2541 S23: 0.1785 REMARK 3 S31: -0.0469 S32: 0.0300 S33: 0.0136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FB7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.6 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.689 REMARK 200 RESOLUTION RANGE LOW (A) : 49.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1G9Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CALCIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6-5.4, 33-40% (V/V) 1,2-PROPANEDIOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.75200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.57650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.75200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 84.57650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 515 P DG E 515 OP3 -0.120 REMARK 500 DG G 615 P DG G 615 OP3 -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 507 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA E 516 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC F 607 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC F 614 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA G 616 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA G 624 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 111.43 -163.47 REMARK 500 LYS A 36 19.89 56.70 REMARK 500 ARG A 70 -82.55 -121.68 REMARK 500 LEU A 152 31.14 -75.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 19 O REMARK 620 2 HOH A 309 O 85.1 REMARK 620 3 ASP B 20 OD2 89.7 83.0 REMARK 620 4 DG E 515 OP3 91.9 106.3 170.7 REMARK 620 5 DG E 515 OP2 89.0 169.3 106.0 64.9 REMARK 620 6 DC F 614 OP1 166.0 81.3 85.3 95.1 104.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP B 20 OD1 80.5 REMARK 620 3 DC D 514 O3' 87.9 155.3 REMARK 620 4 DG E 515 OP2 83.3 85.6 71.4 REMARK 620 5 DC F 614 O3' 178.0 97.8 93.3 95.6 REMARK 620 6 DG G 615 OP1 88.3 104.7 96.6 165.5 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD2 REMARK 620 2 HOH A 302 O 94.9 REMARK 620 3 GLY B 19 O 82.9 99.9 REMARK 620 4 DC D 514 OP1 78.0 84.8 160.6 REMARK 620 5 DG G 615 P 115.5 149.6 85.8 99.7 REMARK 620 6 DG G 615 OP1 80.5 174.3 83.0 90.9 35.0 REMARK 620 7 DG G 615 OP2 148.4 115.8 98.1 96.7 34.0 68.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 203 DBREF 6FB7 A 2 153 UNP P05725 DNE1_CHLRE 2 153 DBREF 6FB7 B 2 153 UNP P05725 DNE1_CHLRE 2 153 DBREF 6FB7 D 501 514 PDB 6FB7 6FB7 501 514 DBREF 6FB7 E 515 524 PDB 6FB7 6FB7 515 524 DBREF 6FB7 F 601 614 PDB 6FB7 6FB7 601 614 DBREF 6FB7 G 615 624 PDB 6FB7 6FB7 615 624 SEQADV 6FB7 ASN A 75 UNP P05725 ASP 75 ENGINEERED MUTATION SEQADV 6FB7 ASN B 75 UNP P05725 ASP 75 ENGINEERED MUTATION SEQRES 1 A 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 A 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 A 152 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 A 152 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 A 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 A 152 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 A 152 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 A 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 A 152 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 A 152 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 A 152 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 A 152 SER GLU THR VAL ARG ALA VAL LEU ASP SEQRES 1 B 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 B 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 B 152 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 B 152 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 B 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 B 152 VAL ARG ASP ARG GLY SER VAL SER ASN TYR ILE LEU SER SEQRES 7 B 152 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 B 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 B 152 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 B 152 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 B 152 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 B 152 SER GLU THR VAL ARG ALA VAL LEU ASP SEQRES 1 D 14 DT DC DA DA DA DA DC DG DT DC DG DT DA SEQRES 2 D 14 DC SEQRES 1 E 10 DG DA DC DG DT DT DT DT DG DA SEQRES 1 F 14 DT DC DA DA DA DA DC DG DT DC DG DT DA SEQRES 2 F 14 DC SEQRES 1 G 10 DG DA DC DG DT DT DT DT DG DA HET MN A 201 1 HET MN A 202 1 HET MN A 203 1 HETNAM MN MANGANESE (II) ION FORMUL 7 MN 3(MN 2+) FORMUL 10 HOH *22(H2 O) HELIX 1 AA1 ASN A 6 ASP A 20 1 15 HELIX 2 AA2 ARG A 51 GLY A 63 1 13 HELIX 3 AA3 GLU A 80 GLN A 92 1 13 HELIX 4 AA4 PRO A 93 LEU A 95 5 3 HELIX 5 AA5 LYS A 98 GLN A 111 1 14 HELIX 6 AA6 GLN A 111 SER A 118 1 8 HELIX 7 AA7 SER A 118 ASN A 136 1 19 HELIX 8 AA8 THR A 144 LEU A 152 1 9 HELIX 9 AA9 ASN B 6 ASP B 20 1 15 HELIX 10 AB1 ARG B 51 GLY B 63 1 13 HELIX 11 AB2 GLU B 80 GLN B 92 1 13 HELIX 12 AB3 PRO B 93 LEU B 95 5 3 HELIX 13 AB4 LYS B 98 LEU B 112 1 15 HELIX 14 AB5 PRO B 113 GLU B 117 5 5 HELIX 15 AB6 SER B 118 ASN B 136 1 19 HELIX 16 AB7 THR B 144 LEU B 152 1 9 SHEET 1 AA1 4 GLY A 21 PRO A 29 0 SHEET 2 AA1 4 HIS A 37 LYS A 48 -1 O SER A 40 N GLN A 26 SHEET 3 AA1 4 VAL A 73 LEU A 78 -1 O SER A 74 N GLN A 47 SHEET 4 AA1 4 TYR A 66 ASP A 69 -1 N TYR A 66 O ILE A 77 SHEET 1 AA2 4 GLY B 21 PRO B 29 0 SHEET 2 AA2 4 HIS B 37 LYS B 48 -1 O GLN B 38 N LYS B 28 SHEET 3 AA2 4 VAL B 73 LEU B 78 -1 O SER B 74 N GLN B 47 SHEET 4 AA2 4 TYR B 66 ARG B 70 -1 N TYR B 66 O ILE B 77 LINK O GLY A 19 MN MN A 202 1555 1555 2.29 LINK OD1 ASP A 20 MN MN A 201 1555 1555 2.12 LINK OD2 ASP A 20 MN MN A 203 1555 1555 2.17 LINK MN MN A 201 OD1 ASP B 20 1555 1555 2.15 LINK MN MN A 201 O3' DC D 514 1555 1555 2.48 LINK MN MN A 201 OP2 DG E 515 1555 1555 2.32 LINK MN MN A 201 O3' DC F 614 1555 1555 2.11 LINK MN MN A 201 OP1 DG G 615 1555 1555 2.21 LINK MN MN A 202 O HOH A 309 1555 1555 2.09 LINK MN MN A 202 OD2 ASP B 20 1555 1555 2.21 LINK MN MN A 202 OP3 DG E 515 1555 1555 2.27 LINK MN MN A 202 OP2 DG E 515 1555 1555 2.20 LINK MN MN A 202 OP1 DC F 614 1555 1555 2.18 LINK MN MN A 203 O HOH A 302 1555 1555 2.19 LINK MN MN A 203 O GLY B 19 1555 1555 2.28 LINK MN MN A 203 OP1 DC D 514 1555 1555 2.14 LINK MN MN A 203 P DG G 615 1555 1555 2.60 LINK MN MN A 203 OP1 DG G 615 1555 1555 2.04 LINK MN MN A 203 OP2 DG G 615 1555 1555 2.44 SITE 1 AC1 6 ASP A 20 ASP B 20 DC D 514 DG E 515 SITE 2 AC1 6 DC F 614 DG G 615 SITE 1 AC2 5 GLY A 19 HOH A 309 ASP B 20 DG E 515 SITE 2 AC2 5 DC F 614 SITE 1 AC3 5 ASP A 20 HOH A 302 GLY B 19 DC D 514 SITE 2 AC3 5 DG G 615 CRYST1 71.504 169.153 49.015 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005912 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020402 0.00000