HEADER METAL BINDING PROTEIN 19-DEC-17 6FBJ TITLE MONOCLONAL ANTIBODY TARGETING MATRIX METALLOPROTEINASE 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 VARIANT: BALB/C; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: HYBRIDOMA; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 VARIANT: BALB/C; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM_VARIANT: HYBRIDOMA KEYWDS ANTIBODY, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.DYM REVDAT 3 17-JAN-24 6FBJ 1 REMARK REVDAT 2 13-NOV-19 6FBJ 1 SOURCE REVDAT 1 30-JAN-19 6FBJ 0 JRNL AUTH V.MOHAN,J.GAFFNEY,M.KLEPFISH,S.AKBAREIAN,B.GRUNWALD, JRNL AUTH 2 L.AKKARI,I.SOLOMONOV,O.DYM,M.EISENSTEIN,J.JOYCE,A.KRUGER, JRNL AUTH 3 D.EDWARDS,I.SAGI JRNL TITL NOVEL MONOCLONAL ANTIBODY TARGETING MATRIX METALLOPROTEINASE JRNL TITL 2 7 SHOWS THERAPEUTIC POTENTIAL AGAINST PANCREATIC CANCER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0171 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1647 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 1.32000 REMARK 3 B12 (A**2) : -0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.283 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3386 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3003 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4605 ; 1.579 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7012 ; 0.968 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 7.929 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;37.013 ;24.255 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;15.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3726 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 677 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1706 ; 1.066 ; 2.614 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1702 ; 0.989 ; 2.598 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2122 ; 1.713 ; 3.906 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2121 ; 1.652 ; 3.893 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1680 ; 1.273 ; 2.737 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1681 ; 1.273 ; 2.743 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2484 ; 2.119 ; 4.065 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3537 ; 5.048 ;29.881 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3537 ; 5.048 ;29.915 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 221 REMARK 3 ORIGIN FOR THE GROUP (A): -32.7070 -5.9910 12.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1614 REMARK 3 T33: 0.0660 T12: 0.0663 REMARK 3 T13: 0.0104 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.0877 L22: 2.4173 REMARK 3 L33: 2.5162 L12: -0.3391 REMARK 3 L13: -0.9354 L23: 0.1706 REMARK 3 S TENSOR REMARK 3 S11: 0.2232 S12: 0.1860 S13: 0.3130 REMARK 3 S21: -0.1177 S22: -0.2186 S23: -0.0280 REMARK 3 S31: -0.3857 S32: -0.0582 S33: -0.0046 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 2 L 216 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1320 -14.7340 1.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.2346 REMARK 3 T33: 0.0832 T12: 0.0361 REMARK 3 T13: 0.0178 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.9773 L22: 2.6386 REMARK 3 L33: 2.5330 L12: -0.5188 REMARK 3 L13: -0.6420 L23: -0.0763 REMARK 3 S TENSOR REMARK 3 S11: 0.2056 S12: 0.1523 S13: 0.3169 REMARK 3 S21: -0.1403 S22: -0.1424 S23: -0.3330 REMARK 3 S31: -0.4534 S32: 0.3356 S33: -0.0632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CACL2 0.05M HEPES PH=7 10% PEG REMARK 280 6000 0.005M BETAINE HCL, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.78033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.56067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.56067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.78033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 324 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 135 REMARK 465 SER H 136 REMARK 465 ALA H 137 REMARK 465 ALA H 138 REMARK 465 GLN H 139 REMARK 465 THR H 140 REMARK 465 ASP H 222 REMARK 465 CYS H 223 REMARK 465 ALA H 224 REMARK 465 ILE L 155 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU H 1 OE1 OE2 REMARK 470 GLN H 3 CD OE1 NE2 REMARK 470 GLN H 5 CD OE1 NE2 REMARK 470 ASP L 148 CG OD1 OD2 REMARK 470 ASN L 150 CG OD1 ND2 REMARK 470 LYS L 152 CG CD CE NZ REMARK 470 ARG L 160 CG CD NE CZ NH1 NH2 REMARK 470 GLN L 161 CG CD OE1 NE2 REMARK 470 ASN L 162 CG OD1 ND2 REMARK 470 LEU L 184 CG CD1 CD2 REMARK 470 LYS L 188 CG CD CE NZ REMARK 470 ASP L 189 CG OD1 OD2 REMARK 470 GLU L 190 CG CD OE1 OE2 REMARK 470 GLU L 192 CG CD OE1 OE2 REMARK 470 ARG L 193 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 200 CG CD OE1 OE2 REMARK 470 THR L 202 OG1 CG2 REMARK 470 THR L 207 OG1 CG2 REMARK 470 SER L 208 OG REMARK 470 ASN L 215 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 66 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 168 -0.12 -141.70 REMARK 500 GLN H 179 -105.13 -121.00 REMARK 500 SER H 198 -61.23 -28.99 REMARK 500 TYR L 33 89.43 -69.73 REMARK 500 VAL L 56 -56.42 70.15 REMARK 500 SER L 72 158.42 176.47 REMARK 500 ARG L 73 -89.61 52.23 REMARK 500 SER L 158 -163.95 -105.70 REMARK 500 ARG L 160 115.19 -164.87 REMARK 500 SER L 167 119.80 -173.08 REMARK 500 LYS L 188 -80.53 -65.28 REMARK 500 ASN L 195 -69.13 -99.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 6FBJ H 1 224 PDB 6FBJ 6FBJ 1 224 DBREF 6FBJ L 2 216 PDB 6FBJ 6FBJ 2 216 SEQRES 1 H 223 GLU VAL GLN LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 223 PRO GLY ALA SER VAL LYS ILE PRO CYS LYS ALA SER GLY SEQRES 3 H 223 TYR THR PHE THR ASP TYR ASN MET ASP TRP MET LYS GLN SEQRES 4 H 223 SER HIS GLY LYS SER LEU GLU TRP ILE GLY HIS ILE ASN SEQRES 5 H 223 PRO ASN ASN GLY GLY THR PHE TYR ASN GLN LYS PHE LYS SEQRES 6 H 223 ASP LYS ALA THR PHE ILE VAL ASP LYS SER SER ASN THR SEQRES 7 H 223 ALA TYR MET GLU LEU ARG SER LEU THR SER GLU ASP THR SEQRES 8 H 223 ALA VAL TYR PHE CYS ALA ARG GLY GLY GLY LEU ARG ARG SEQRES 9 H 223 GLY PRO PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 223 VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO SEQRES 11 H 223 LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL SEQRES 12 H 223 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 H 223 VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY SEQRES 14 H 223 VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR SEQRES 15 H 223 THR LEU SER SER SER VAL THR VAL PRO SER SER THR TRP SEQRES 16 H 223 PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SEQRES 17 H 223 SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP SEQRES 18 H 223 CYS ALA SEQRES 1 L 214 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 L 214 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 214 GLU SER PHE ASP SER TYR GLY ASN THR PHE VAL HIS TRP SEQRES 4 L 214 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 214 TYR LEU VAL SER ASN LEU GLU SER GLY VAL PRO ALA ARG SEQRES 6 L 214 PHE ARG GLY ARG GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 L 214 ILE ASP PRO VAL GLU ALA ASP ASP ALA ALA ILE TYR TYR SEQRES 8 L 214 CYS GLN GLN ASN ASN GLU ASP PRO TYR THR PHE GLY GLY SEQRES 9 L 214 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 214 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 214 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 214 TYR PRO LYS ASP ILE ASN VAL LYS TRP ILE ASP GLY SER SEQRES 13 L 214 GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN SEQRES 14 L 214 ASP SER LYS ASP SER THR TYR SER MET SER SER THR LEU SEQRES 15 L 214 THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR SEQRES 16 L 214 THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO ILE SEQRES 17 L 214 VAL LYS SER PHE ASN ARG FORMUL 3 HOH *54(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLN H 62 LYS H 65 5 4 HELIX 3 AA3 LYS H 74 SER H 76 5 3 HELIX 4 AA4 THR H 88 THR H 92 5 5 HELIX 5 AA5 SER H 164 SER H 166 5 3 HELIX 6 AA6 PRO H 208 SER H 211 5 4 HELIX 7 AA7 GLU L 84 ALA L 88 5 5 HELIX 8 AA8 SER L 126 SER L 132 1 7 HELIX 9 AA9 LYS L 188 GLU L 192 1 5 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA1 4 THR H 78 LEU H 84 -1 O MET H 82 N ILE H 20 SHEET 4 AA1 4 ALA H 68 ASP H 73 -1 N THR H 69 O GLU H 83 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 115 VAL H 119 1 O THR H 118 N GLU H 10 SHEET 3 AA2 6 ALA H 93 ARG H 99 -1 N ALA H 93 O VAL H 117 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N ASP H 35 O ALA H 98 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O PHE H 59 N HIS H 50 SHEET 1 AA3 4 SER H 128 LEU H 132 0 SHEET 2 AA3 4 MET H 143 TYR H 153 -1 O LEU H 149 N TYR H 130 SHEET 3 AA3 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 153 SHEET 4 AA3 4 VAL H 171 THR H 173 -1 N HIS H 172 O SER H 188 SHEET 1 AA4 4 SER H 128 LEU H 132 0 SHEET 2 AA4 4 MET H 143 TYR H 153 -1 O LEU H 149 N TYR H 130 SHEET 3 AA4 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 153 SHEET 4 AA4 4 VAL H 177 LEU H 178 -1 N VAL H 177 O THR H 184 SHEET 1 AA5 3 THR H 159 TRP H 162 0 SHEET 2 AA5 3 THR H 202 HIS H 207 -1 O ASN H 204 N THR H 161 SHEET 3 AA5 3 THR H 212 LYS H 217 -1 O VAL H 214 N VAL H 205 SHEET 1 AA6 4 LEU L 5 SER L 8 0 SHEET 2 AA6 4 ALA L 20 ALA L 26 -1 O SER L 23 N SER L 8 SHEET 3 AA6 4 ASP L 75 ILE L 80 -1 O LEU L 78 N ILE L 22 SHEET 4 AA6 4 PHE L 67 SER L 72 -1 N ARG L 70 O THR L 77 SHEET 1 AA7 6 SER L 11 SER L 15 0 SHEET 2 AA7 6 THR L 107 LYS L 112 1 O GLU L 110 N LEU L 12 SHEET 3 AA7 6 ALA L 89 GLN L 95 -1 N ALA L 89 O LEU L 109 SHEET 4 AA7 6 VAL L 38 GLN L 43 -1 N HIS L 39 O GLN L 94 SHEET 5 AA7 6 LYS L 50 TYR L 54 -1 O ILE L 53 N TRP L 40 SHEET 6 AA7 6 ASN L 58 LEU L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA8 4 SER L 11 SER L 15 0 SHEET 2 AA8 4 THR L 107 LYS L 112 1 O GLU L 110 N LEU L 12 SHEET 3 AA8 4 ALA L 89 GLN L 95 -1 N ALA L 89 O LEU L 109 SHEET 4 AA8 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AA9 4 THR L 119 PHE L 123 0 SHEET 2 AA9 4 GLY L 134 PHE L 144 -1 O PHE L 140 N SER L 121 SHEET 3 AA9 4 TYR L 178 THR L 187 -1 O LEU L 184 N VAL L 137 SHEET 4 AA9 4 VAL L 164 TRP L 168 -1 N LEU L 165 O THR L 183 SHEET 1 AB1 3 ASN L 150 LYS L 152 0 SHEET 2 AB1 3 SER L 196 THR L 202 -1 O GLU L 200 N LYS L 152 SHEET 3 AB1 3 ILE L 210 ASN L 215 -1 O ILE L 210 N ALA L 201 SSBOND 1 CYS H 22 CYS H 97 1555 1555 2.06 SSBOND 2 CYS H 148 CYS H 203 1555 1555 2.04 SSBOND 3 CYS L 24 CYS L 93 1555 1555 2.18 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.02 CISPEP 1 PHE H 154 PRO H 155 0 -4.05 CISPEP 2 GLU H 156 PRO H 157 0 1.81 CISPEP 3 TRP H 196 PRO H 197 0 6.32 CISPEP 4 SER L 8 PRO L 9 0 -3.22 CISPEP 5 ASP L 81 PRO L 82 0 -0.59 CISPEP 6 ASP L 99 PRO L 100 0 -4.94 CISPEP 7 TYR L 145 PRO L 146 0 3.40 CRYST1 88.443 88.443 119.341 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011307 0.006528 0.000000 0.00000 SCALE2 0.000000 0.013056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008379 0.00000