HEADER RNA BINDING PROTEIN 19-DEC-17 6FBL TITLE NMR SOLUTION STRUCTURE OF MINA-1(254-334) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: K HOMOLOGY DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: C41G7.3, CELE_C41G7.3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCFX3 KEYWDS K HOMOLOGY (KH) DOMAIN, TYPE-I KH DOMAIN, RNA RECOGNITION, RNA KEYWDS 2 BINDING PROTEIN, GXXG LOOP, ANTIPARALLEL THREE-STRANDED BETA-SHEET EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.MICHEL,F.ALLAIN REVDAT 5 14-JUN-23 6FBL 1 REMARK REVDAT 4 18-SEP-19 6FBL 1 JRNL REMARK REVDAT 3 08-MAY-19 6FBL 1 REMARK REVDAT 2 20-FEB-19 6FBL 1 JRNL REVDAT 1 30-JAN-19 6FBL 0 JRNL AUTH A.SENDOEL,D.SUBASIC,L.DUCOLI,M.KELLER,E.MICHEL,I.KOHLER, JRNL AUTH 2 K.D.SINGH,X.ZHENG,A.BRUMMER,J.IMIG,S.KISHORE,Y.WU,A.KANITZ, JRNL AUTH 3 A.KAECH,N.MITTAL,A.M.MATIA-GONZALEZ,A.P.GERBER,M.ZAVOLAN, JRNL AUTH 4 R.AEBERSOLD,J.HALL,F.H.ALLAIN,M.O.HENGARTNER JRNL TITL MINA-1 AND WAGO-4 ARE PART OF REGULATORY NETWORK JRNL TITL 2 COORDINATING GERM CELL DEATH AND RNAI IN C. ELEGANS. JRNL REF CELL DEATH DIFFER. V. 26 2157 2019 JRNL REFN ISSN 1350-9047 JRNL PMID 30728462 JRNL DOI 10.1038/S41418-019-0291-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN IMPLICIT WATER REMARK 4 REMARK 4 6FBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007911. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.15 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] MINA REMARK 210 -1(254-334), 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 2 MM DTT, 0.5 MM EDTA, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, ATNOS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 5 -27.25 -154.70 REMARK 500 1 ASN A 41 16.29 57.63 REMARK 500 1 SER A 78 -36.87 -159.70 REMARK 500 1 MET A 80 9.90 52.47 REMARK 500 1 GLN A 81 19.13 50.96 REMARK 500 1 SER A 82 5.03 -156.85 REMARK 500 2 ILE A 25 -36.30 -132.62 REMARK 500 2 HIS A 47 70.24 -114.93 REMARK 500 2 SER A 78 -38.28 -158.91 REMARK 500 2 MET A 80 0.57 54.68 REMARK 500 2 GLN A 81 18.38 52.26 REMARK 500 3 LYS A 6 23.61 -146.40 REMARK 500 3 ASN A 41 17.18 58.52 REMARK 500 3 SER A 78 -36.38 -158.94 REMARK 500 3 MET A 80 10.83 53.68 REMARK 500 3 GLN A 81 18.79 52.07 REMARK 500 3 SER A 82 -15.57 -162.25 REMARK 500 4 MET A 5 18.36 57.46 REMARK 500 4 ASN A 41 19.83 56.08 REMARK 500 4 SER A 78 -36.70 -159.89 REMARK 500 4 MET A 80 -1.94 56.97 REMARK 500 5 ASN A 28 50.37 -117.71 REMARK 500 5 ALA A 30 19.30 55.68 REMARK 500 5 ASN A 41 15.41 57.03 REMARK 500 5 SER A 78 -39.49 -158.31 REMARK 500 6 ASN A 41 15.58 56.59 REMARK 500 6 SER A 78 -40.04 -158.48 REMARK 500 6 MET A 80 -3.57 57.08 REMARK 500 6 GLN A 81 21.64 49.79 REMARK 500 6 ASP A 85 12.57 58.09 REMARK 500 7 ASN A 41 17.88 56.80 REMARK 500 7 SER A 78 -39.66 -158.44 REMARK 500 7 GLN A 81 11.80 56.96 REMARK 500 8 ASN A 41 17.35 57.14 REMARK 500 8 THR A 48 -9.90 -59.87 REMARK 500 8 SER A 78 -33.05 -150.91 REMARK 500 8 ASP A 85 18.28 59.91 REMARK 500 9 ASN A 28 -154.25 -123.96 REMARK 500 9 ARG A 29 27.52 -71.58 REMARK 500 9 ASN A 41 18.97 56.75 REMARK 500 9 SER A 78 -35.80 -155.56 REMARK 500 9 MET A 80 23.96 49.22 REMARK 500 9 SER A 82 -11.15 -142.81 REMARK 500 9 GLN A 84 -22.39 -147.92 REMARK 500 10 ASN A 28 84.79 -155.34 REMARK 500 10 ASN A 41 15.78 56.96 REMARK 500 10 SER A 78 -25.57 -150.23 REMARK 500 10 MET A 80 10.44 52.62 REMARK 500 10 GLN A 81 13.65 54.56 REMARK 500 10 SER A 82 27.80 -156.66 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34220 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF MINA-1(254-334) DBREF 6FBL A 6 86 UNP Q93367 Q93367_CAEEL 254 334 SEQADV 6FBL SER A 1 UNP Q93367 EXPRESSION TAG SEQADV 6FBL GLY A 2 UNP Q93367 EXPRESSION TAG SEQADV 6FBL SER A 3 UNP Q93367 EXPRESSION TAG SEQADV 6FBL HIS A 4 UNP Q93367 EXPRESSION TAG SEQADV 6FBL MET A 5 UNP Q93367 EXPRESSION TAG SEQRES 1 A 86 SER GLY SER HIS MET LYS THR CYS VAL VAL GLU LYS ILE SEQRES 2 A 86 LYS GLN TRP ILE PRO THR THR GLU VAL GLY LYS ILE LEU SEQRES 3 A 86 GLY ASN ARG ALA ALA VAL LYS LYS HIS ILE GLU ARG GLN SEQRES 4 A 86 PHE ASN CYS VAL ILE THR VAL HIS THR GLU VAL GLN SER SEQRES 5 A 86 SER PHE GLY ALA THR PRO VAL GLU ILE VAL ALA GLN ASN SEQRES 6 A 86 LYS GLU GLN CYS GLN GLU ALA ARG ASN ALA VAL MET SER SEQRES 7 A 86 LEU MET GLN SER HIS GLN ASP LYS HELIX 1 AA1 PRO A 18 GLU A 21 5 4 HELIX 2 AA2 VAL A 22 GLY A 27 1 6 HELIX 3 AA3 ALA A 30 ASN A 41 1 12 HELIX 4 AA4 ASN A 65 ASN A 74 1 10 HELIX 5 AA5 SER A 82 LYS A 86 5 5 SHEET 1 AA1 3 GLU A 11 ILE A 17 0 SHEET 2 AA1 3 THR A 57 ALA A 63 -1 O THR A 57 N ILE A 17 SHEET 3 AA1 3 VAL A 43 VAL A 46 -1 N THR A 45 O GLU A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1