HEADER LYASE 19-DEC-17 6FBT TITLE THE X-RAY STRUCTURE OF LYTIC TRANSGLYCOSYLASE SLT FROM PSEUDOMONAS TITLE 2 AERUGINOSA IN COMPLEX WITH THE REACTION PRODUCT NAG- TITLE 3 ANHNAMPENTAPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SOLUBLE LYTIC TRANSGLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NAG-ANHNAMPENTAPEPTIDE; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PA3020; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 10 ORGANISM_TAXID: 287 KEYWDS LYTIC TRANSGLYCOSYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.BATUECAS,T.DOMINGUEZ-GIL,J.A.HERMOSO REVDAT 7 31-JAN-24 6FBT 1 REMARK REVDAT 6 15-NOV-23 6FBT 1 REMARK LINK ATOM REVDAT 5 21-DEC-22 6FBT 1 COMPND SOURCE REMARK DBREF REVDAT 5 2 1 SEQRES LINK ATOM REVDAT 4 30-MAR-22 6FBT 1 HETSYN REVDAT 3 29-JUL-20 6FBT 1 REMARK HETNAM SITE REVDAT 2 02-MAY-18 6FBT 1 JRNL REVDAT 1 18-APR-18 6FBT 0 JRNL AUTH M.LEE,M.T.BATUECAS,S.TOMOSHIGE,T.DOMINGUEZ-GIL, JRNL AUTH 2 K.V.MAHASENAN,D.A.DIK,D.HESEK,C.MILLAN,I.USON,E.LASTOCHKIN, JRNL AUTH 3 J.A.HERMOSO,S.MOBASHERY JRNL TITL EXOLYTIC AND ENDOLYTIC TURNOVER OF PEPTIDOGLYCAN BY LYTIC JRNL TITL 2 TRANSGLYCOSYLASE SLT OFPSEUDOMONAS AERUGINOSA. JRNL REF PROC. NATL. ACAD. SCI. V. 115 4393 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29632171 JRNL DOI 10.1073/PNAS.1801298115 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 143.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1457 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2098 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4979 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.79000 REMARK 3 B22 (A**2) : -1.79000 REMARK 3 B33 (A**2) : 5.81000 REMARK 3 B12 (A**2) : -0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.371 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.323 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5200 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4763 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7064 ; 1.673 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10975 ; 1.072 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 619 ; 6.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 265 ;36.616 ;22.377 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 853 ;17.682 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;18.245 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 743 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5801 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1186 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2449 ; 5.124 ; 6.452 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2448 ; 5.123 ; 6.452 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3062 ; 7.578 ; 9.668 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3063 ; 7.577 ; 9.668 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2751 ; 5.848 ; 7.145 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2752 ; 5.847 ; 7.145 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3998 ; 8.652 ;10.454 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6042 ;11.327 ;75.422 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6041 ;11.328 ;75.412 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30002 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 143.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OHU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM POTASSIUM PHOSPHATE PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.36650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.36650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.36650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C API E 5 N DAL E 7 1.37 REMARK 500 O HOH A 851 O HOH A 861 2.15 REMARK 500 NE2 GLN A 299 O HOH A 801 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 893 O HOH A 893 2545 0.81 REMARK 500 O HOH A 802 O HOH A 852 4654 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DAL E 6 C DAL E 6 O 0.210 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 608 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 608 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DAL E 7 CB - CA - C ANGL. DEV. = -10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 -37.52 -156.12 REMARK 500 LEU A 56 40.62 -93.81 REMARK 500 ASP A 58 41.93 -109.91 REMARK 500 GLN A 141 70.83 -109.60 REMARK 500 GLN A 202 0.03 -56.87 REMARK 500 ARG A 233 67.68 -68.71 REMARK 500 ASP A 301 58.09 -155.36 REMARK 500 ALA A 407 140.23 -37.54 REMARK 500 ASP A 437 -168.12 -68.34 REMARK 500 TRP A 453 69.27 -102.75 REMARK 500 MET A 507 96.01 -54.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 542 GLN A 543 149.82 REMARK 500 LYS A 588 ASP A 589 -34.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 6FBT A 30 639 UNP Q9HZI6 Q9HZI6_PSEAE 30 639 DBREF 6FBT E 3 7 PDB 6FBT 6FBT 3 7 SEQRES 1 A 610 GLN ARG ARG LEU TYR ASP GLN ALA LYS ALA ALA LEU ALA SEQRES 2 A 610 LYS GLY ASN SER ALA PRO TYR MET ALA SER ARG SER ALA SEQRES 3 A 610 LEU ARG ASP TYR PRO LEU GLU PRO TYR LEU ALA TYR ASP SEQRES 4 A 610 GLU LEU THR HIS ARG LEU LYS SER ALA SER ASN GLU GLU SEQRES 5 A 610 VAL GLU ARG PHE LEU THR GLU HIS GLY ASP LEU PRO GLN SEQRES 6 A 610 ILE GLY TRP LEU LYS LEU ARG TRP LEU ARG LEU LEU ALA SEQRES 7 A 610 ASP ARG GLY ASP TRP LYS THR PHE VAL ASN TYR TYR ASP SEQRES 8 A 610 PRO LYS LEU ASN PHE THR GLU LEU ASP CYS LEU TYR GLY SEQRES 9 A 610 GLN TYR GLN LEU GLY HIS GLY GLN LYS ALA GLU GLY TYR SEQRES 10 A 610 ALA THR SER GLU ARG LEU TRP LEU VAL GLY LYS SER GLN SEQRES 11 A 610 PRO ALA ALA CYS ASP THR LEU PHE GLY LEU TRP GLN GLY SEQRES 12 A 610 GLU GLY GLN LEU THR GLU GLU LYS VAL TRP LYS ARG LEU SEQRES 13 A 610 LYS LEU ALA ALA GLU ALA ARG ASN TYR SER LEU ALA SER SEQRES 14 A 610 HIS LEU ALA GLN ARG LEU PRO THR LEU GLY ASN GLN GLY SEQRES 15 A 610 ALA LEU MET VAL SER VAL ALA GLN ASN PRO ALA GLN LEU SEQRES 16 A 610 SER GLN THR GLY ARG PHE SER GLN ARG ASP HIS ALA THR SEQRES 17 A 610 ALA ASP VAL VAL GLY LEU GLY LEU ARG ARG LEU ALA ARG SEQRES 18 A 610 GLN ASP PRO GLU LYS ALA LEU SER LEU LEU ASP TYR TYR SEQRES 19 A 610 SER SER ALA LEU PRO PHE SER SER ASP GLU LYS VAL ALA SEQRES 20 A 610 ILE ALA ARG GLU ILE GLY LEU SER LEU ALA LYS ARG PHE SEQRES 21 A 610 ASP PRO ARG ALA LEU PRO LEU MET THR GLN TYR ASP PRO SEQRES 22 A 610 GLY LEU ARG ASP ASN THR VAL THR GLU TRP ARG THR ARG SEQRES 23 A 610 LEU LEU LEU ARG LEU GLY ARG TRP ASP GLU ALA TYR ALA SEQRES 24 A 610 LEU THR ARG LYS LEU PRO GLN ASP LEU ALA ALA THR SER SEQRES 25 A 610 ARG TRP ARG TYR TRP GLN ALA ARG SER LEU GLN LEU ALA SEQRES 26 A 610 GLN PRO ASN SER LYS GLU PRO ILE ALA LEU TYR GLN LYS SEQRES 27 A 610 LEU ALA GLY GLU ARG ASP PHE TYR GLY PHE LEU ALA ALA SEQRES 28 A 610 ASP ARG LEU SER VAL PRO TYR LYS LEU GLY ASN ARG PRO SEQRES 29 A 610 ALA HIS ILE ASP PRO ARG VAL LEU GLN ARG VAL ARG ASN SEQRES 30 A 610 ALA ALA SER THR ARG ARG ALA MET GLU PHE PHE ASN ARG SEQRES 31 A 610 GLY GLU VAL ILE ASN ALA ARG ARG GLU TRP TYR HIS ALA SEQRES 32 A 610 ALA ARG LEU PHE ASP ARG ASP GLU LEU ILE ALA GLN ALA SEQRES 33 A 610 ARG LEU ALA TYR ASP MET GLN TRP TYR PHE PRO ALA ILE SEQRES 34 A 610 ARG SER ILE SER GLN ALA GLN TYR TRP ASP ASP LEU ASP SEQRES 35 A 610 ILE ARG PHE PRO MET ALA HIS ARG ALA THR LEU VAL ARG SEQRES 36 A 610 GLU ALA LYS ASN ARG GLY LEU HIS SER SER TRP ILE PHE SEQRES 37 A 610 ALA ILE THR ARG GLN GLU SER ALA PHE MET SER ASP ALA SEQRES 38 A 610 ARG SER GLY VAL GLY ALA THR GLY LEU MET GLN LEU MET SEQRES 39 A 610 PRO GLY THR ALA LYS GLU THR SER ARG LYS PHE GLY ILE SEQRES 40 A 610 PRO LEU ALA SER THR GLN GLN LEU ILE VAL PRO ASP VAL SEQRES 41 A 610 ASN ILE ARG LEU GLY ALA ALA TYR LEU SER GLN VAL HIS SEQRES 42 A 610 SER GLN PHE ASN GLY ASN ARG VAL LEU ALA SER ALA ALA SEQRES 43 A 610 TYR ASN ALA GLY PRO GLY ARG VAL ARG GLN TRP LEU LYS SEQRES 44 A 610 ASP THR ARG HIS LEU ALA PHE ASP VAL TRP ILE GLU THR SEQRES 45 A 610 ILE PRO PHE ASP GLU THR ARG GLN TYR VAL GLN ASN VAL SEQRES 46 A 610 LEU SER TYR ALA VAL ILE TYR GLY GLN LYS LEU ASN ALA SEQRES 47 A 610 PRO GLN PRO ILE VAL ASP TRP HIS GLU ARG TYR PHE SEQRES 1 E 5 ALA DGL API DAL DAL HET DGL E 4 8 HET API E 5 12 HET DAL E 6 5 HET DAL E 7 5 HET PO4 A 701 5 HET PO4 A 702 5 HET PO4 A 703 5 HET PO4 A 704 5 HET PO4 A 705 5 HET NAG A 706 14 HET AH0 E 101 18 HETNAM DGL D-GLUTAMIC ACID HETNAM API 2,6-DIAMINOPIMELIC ACID HETNAM DAL D-ALANINE HETNAM PO4 PHOSPHATE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM AH0 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT- HETNAM 2 AH0 3-YLOXY)-PROPIONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN AH0 1,6-ANHYDRO-N-ACETYLMURAMIC ACID FORMUL 2 DGL C5 H9 N O4 FORMUL 2 API C7 H14 N2 O4 FORMUL 2 DAL 2(C3 H7 N O2) FORMUL 3 PO4 5(O4 P 3-) FORMUL 8 NAG C8 H15 N O6 FORMUL 9 AH0 C11 H17 N O7 FORMUL 10 HOH *95(H2 O) HELIX 1 AA1 TYR A 34 ALA A 42 1 9 HELIX 2 AA2 SER A 46 SER A 54 1 9 HELIX 3 AA3 LEU A 61 ARG A 73 1 13 HELIX 4 AA4 SER A 78 HIS A 89 1 12 HELIX 5 AA5 GLN A 94 GLY A 110 1 17 HELIX 6 AA6 ASP A 111 TYR A 119 1 9 HELIX 7 AA7 ASP A 120 ASN A 124 5 5 HELIX 8 AA8 PHE A 125 GLY A 138 1 14 HELIX 9 AA9 GLN A 141 LEU A 154 1 14 HELIX 10 AB1 PRO A 160 GLU A 173 1 14 HELIX 11 AB2 THR A 177 ALA A 191 1 15 HELIX 12 AB3 ASN A 193 GLN A 202 1 10 HELIX 13 AB4 LEU A 207 ASN A 220 1 14 HELIX 14 AB5 PRO A 221 SER A 231 5 11 HELIX 15 AB6 ASP A 234 ASP A 252 1 19 HELIX 16 AB7 ASP A 252 SER A 264 1 13 HELIX 17 AB8 SER A 270 ARG A 288 1 19 HELIX 18 AB9 PHE A 289 PRO A 291 5 3 HELIX 19 AC1 ARG A 292 ASP A 301 1 10 HELIX 20 AC2 ASP A 306 LEU A 320 1 15 HELIX 21 AC3 ARG A 322 LEU A 333 1 12 HELIX 22 AC4 PRO A 334 ALA A 339 1 6 HELIX 23 AC5 THR A 340 GLN A 355 1 16 HELIX 24 AC6 LYS A 359 ALA A 369 1 11 HELIX 25 AC7 ASP A 373 SER A 384 1 12 HELIX 26 AC8 ASP A 397 ALA A 407 1 11 HELIX 27 AC9 ALA A 407 ASN A 418 1 12 HELIX 28 AD1 GLU A 421 ALA A 433 1 13 HELIX 29 AD2 ASP A 437 ASP A 450 1 14 HELIX 30 AD3 TRP A 453 ALA A 464 1 12 HELIX 31 AD4 ASP A 469 PHE A 474 1 6 HELIX 32 AD5 HIS A 478 ARG A 489 1 12 HELIX 33 AD6 HIS A 492 ALA A 505 1 14 HELIX 34 AD7 MET A 523 GLY A 535 1 13 HELIX 35 AD8 VAL A 546 PHE A 565 1 20 HELIX 36 AD9 ASN A 568 GLY A 579 1 12 HELIX 37 AE1 GLY A 579 LEU A 587 1 9 HELIX 38 AE2 ALA A 594 THR A 601 1 8 HELIX 39 AE3 PHE A 604 LEU A 625 1 22 HELIX 40 AE4 ASP A 633 ARG A 637 5 5 SSBOND 1 CYS A 130 CYS A 163 1555 1555 1.99 LINK CD ARG A 427 O2 PO4 A 705 1555 1555 1.40 LINK C1 NAG A 706 O4 AH0 E 101 1555 1555 1.39 LINK C ALA E 3 N DGL E 4 1555 1555 1.32 LINK N ALA E 3 C AH0 E 101 1555 1555 1.34 LINK CD DGL E 4 N API E 5 1555 1555 1.35 LINK C API E 5 N DAL E 6 1555 1555 4.03 LINK N DAL E 6 C DAL E 7 1555 1555 1.49 CISPEP 1 ALA A 42 LYS A 43 0 5.98 CRYST1 165.526 165.526 54.733 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006041 0.003488 0.000000 0.00000 SCALE2 0.000000 0.006976 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018271 0.00000