HEADER TRANSLATION 20-DEC-17 6FC3 TITLE CRYSTAL STRUCTURE OF THE EIF4E-P20 COMPLEX FROM SACCHAROMYCES TITLE 2 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EIF4E,EIF-4F 25 KDA SUBUNIT,MRNA CAP-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CAP-ASSOCIATED PROTEIN CAF20; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: 20 KDA CAP-ASSOCIATED PROTEIN,CCR4-ASSOCIATED FACTOR 2,P20; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CDC33, TIF45, YOL139C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: CAF20, CAF2, CAP20, YOR276W, O5453W; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSLATION TRANSLATIONAL CONTROL GENE EXPRESSION 4E-BINDING PROTEIN, KEYWDS 2 TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.GRUENER,E.VALKOV REVDAT 3 17-JAN-24 6FC3 1 LINK REVDAT 2 08-AUG-18 6FC3 1 JRNL REVDAT 1 27-JUN-18 6FC3 0 JRNL AUTH S.GRUNER,R.WEBER,D.PETER,M.Y.CHUNG,C.IGREJA,E.VALKOV, JRNL AUTH 2 E.IZAURRALDE JRNL TITL STRUCTURAL MOTIFS IN EIF4G AND 4E-BPS MODULATE THEIR BINDING JRNL TITL 2 TO EIF4E TO REGULATE TRANSLATION INITIATION IN YEAST. JRNL REF NUCLEIC ACIDS RES. V. 46 6893 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30053226 JRNL DOI 10.1093/NAR/GKY542 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 52161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7929 - 4.6678 0.96 2588 119 0.1860 0.1966 REMARK 3 2 4.6678 - 3.7056 0.96 2543 153 0.1383 0.1861 REMARK 3 3 3.7056 - 3.2374 0.98 2634 137 0.1423 0.1719 REMARK 3 4 3.2374 - 2.9415 0.99 2643 161 0.1587 0.2041 REMARK 3 5 2.9415 - 2.7307 0.98 2615 124 0.1559 0.1945 REMARK 3 6 2.7307 - 2.5697 0.98 2641 137 0.1645 0.2425 REMARK 3 7 2.5697 - 2.4410 0.97 2567 145 0.1688 0.1912 REMARK 3 8 2.4410 - 2.3348 0.97 2613 119 0.1714 0.2285 REMARK 3 9 2.3348 - 2.2449 0.96 2568 127 0.1736 0.2163 REMARK 3 10 2.2449 - 2.1674 0.98 2602 177 0.1751 0.1899 REMARK 3 11 2.1674 - 2.0997 0.98 2591 153 0.1786 0.2204 REMARK 3 12 2.0997 - 2.0397 0.97 2615 132 0.1987 0.2373 REMARK 3 13 2.0397 - 1.9860 0.99 2631 154 0.2132 0.2726 REMARK 3 14 1.9860 - 1.9375 0.99 2652 98 0.2281 0.2402 REMARK 3 15 1.9375 - 1.8935 0.97 2640 130 0.2609 0.3325 REMARK 3 16 1.8935 - 1.8532 0.97 2589 128 0.2688 0.3109 REMARK 3 17 1.8532 - 1.8161 0.97 2561 150 0.2782 0.2966 REMARK 3 18 1.8161 - 1.7818 0.97 2624 146 0.2923 0.3074 REMARK 3 19 1.7818 - 1.7500 0.97 2648 106 0.3016 0.2904 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 1859 REMARK 3 ANGLE : 1.031 2510 REMARK 3 CHIRALITY : 0.058 272 REMARK 3 PLANARITY : 0.007 322 REMARK 3 DIHEDRAL : 13.358 1104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8534 59.9571 20.9285 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.1862 REMARK 3 T33: 0.1328 T12: 0.0502 REMARK 3 T13: 0.0131 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.1958 L22: 2.2050 REMARK 3 L33: 2.3324 L12: -0.2365 REMARK 3 L13: 0.3164 L23: -1.7720 REMARK 3 S TENSOR REMARK 3 S11: -0.0969 S12: -0.3154 S13: 0.0073 REMARK 3 S21: 0.1690 S22: 0.1456 S23: 0.1794 REMARK 3 S31: -0.2349 S32: -0.3792 S33: -0.0031 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2738 44.9792 33.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.6271 REMARK 3 T33: 0.3597 T12: -0.1139 REMARK 3 T13: 0.2123 T23: 0.2621 REMARK 3 L TENSOR REMARK 3 L11: 0.2845 L22: 4.4214 REMARK 3 L33: 4.5228 L12: 1.1278 REMARK 3 L13: -0.8500 L23: -3.5478 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: 0.0369 S13: -0.2040 REMARK 3 S21: -0.2945 S22: 0.0717 S23: -0.0383 REMARK 3 S31: 0.0734 S32: -0.3905 S33: -0.3175 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4793 60.1075 20.9451 REMARK 3 T TENSOR REMARK 3 T11: 0.1062 T22: 0.1165 REMARK 3 T33: 0.0581 T12: 0.0213 REMARK 3 T13: 0.0095 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.9036 L22: 2.9739 REMARK 3 L33: 1.5083 L12: -0.7808 REMARK 3 L13: 0.5739 L23: -0.9244 REMARK 3 S TENSOR REMARK 3 S11: -0.1534 S12: -0.1713 S13: 0.0362 REMARK 3 S21: 0.1122 S22: 0.0907 S23: 0.0259 REMARK 3 S31: -0.1164 S32: -0.1876 S33: 0.0586 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7542 48.7089 12.4020 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.2281 REMARK 3 T33: 0.2110 T12: 0.0219 REMARK 3 T13: 0.0329 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 2.1530 L22: 2.7490 REMARK 3 L33: 2.6223 L12: 0.7169 REMARK 3 L13: -0.5564 L23: 0.8853 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.2617 S13: -0.1076 REMARK 3 S21: 0.0533 S22: 0.0050 S23: 0.5911 REMARK 3 S31: -0.0941 S32: -0.5429 S33: 0.0989 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0267 53.6175 11.7015 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.0716 REMARK 3 T33: 0.0670 T12: 0.0025 REMARK 3 T13: 0.0010 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 3.1297 L22: 3.6378 REMARK 3 L33: 2.7053 L12: -0.6601 REMARK 3 L13: 0.1915 L23: -0.8177 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.0848 S13: -0.0295 REMARK 3 S21: -0.1361 S22: -0.0143 S23: 0.0906 REMARK 3 S31: 0.0716 S32: -0.0220 S33: -0.0416 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1469 47.9329 3.2955 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.0704 REMARK 3 T33: 0.0666 T12: -0.0076 REMARK 3 T13: -0.0012 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 5.8863 L22: 3.6513 REMARK 3 L33: 2.9209 L12: -0.2930 REMARK 3 L13: 0.6344 L23: 0.4487 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.2120 S13: -0.0031 REMARK 3 S21: -0.1988 S22: 0.0322 S23: 0.1650 REMARK 3 S31: -0.0430 S32: -0.1239 S33: 0.0195 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2120 37.3326 9.3770 REMARK 3 T TENSOR REMARK 3 T11: 0.3499 T22: 0.2433 REMARK 3 T33: 0.3734 T12: -0.0930 REMARK 3 T13: 0.0368 T23: 0.0977 REMARK 3 L TENSOR REMARK 3 L11: 2.1279 L22: 1.1996 REMARK 3 L33: 5.1285 L12: 0.1287 REMARK 3 L13: -1.2470 L23: -1.1348 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: -0.4438 S13: -0.8133 REMARK 3 S21: 0.5137 S22: 0.1002 S23: 0.3879 REMARK 3 S31: 0.6251 S32: -0.3372 S33: 0.0877 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0061 68.2965 4.3438 REMARK 3 T TENSOR REMARK 3 T11: 0.1634 T22: 0.0401 REMARK 3 T33: 0.1430 T12: -0.0055 REMARK 3 T13: -0.0101 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 4.8940 L22: 3.2297 REMARK 3 L33: 6.6127 L12: -1.9721 REMARK 3 L13: 5.0349 L23: -1.2971 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 0.1849 S13: 0.2968 REMARK 3 S21: -0.0826 S22: -0.0854 S23: -0.0747 REMARK 3 S31: -0.1379 S32: 0.2536 S33: 0.0503 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2901 70.4735 24.6044 REMARK 3 T TENSOR REMARK 3 T11: 0.4211 T22: 0.2370 REMARK 3 T33: 0.3120 T12: 0.0435 REMARK 3 T13: -0.0581 T23: -0.1241 REMARK 3 L TENSOR REMARK 3 L11: 6.9621 L22: 1.3451 REMARK 3 L33: 7.2650 L12: 2.2333 REMARK 3 L13: -1.8735 L23: -1.5113 REMARK 3 S TENSOR REMARK 3 S11: -0.3228 S12: 0.0280 S13: 0.8026 REMARK 3 S21: 0.2345 S22: 0.4557 S23: -0.0015 REMARK 3 S31: -0.8632 S32: 0.3362 S33: -0.3233 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3113 49.6404 34.8672 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.2919 REMARK 3 T33: 0.1210 T12: -0.0004 REMARK 3 T13: 0.0024 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 6.1943 L22: 2.8753 REMARK 3 L33: 2.9065 L12: -2.7799 REMARK 3 L13: 0.5504 L23: 0.2849 REMARK 3 S TENSOR REMARK 3 S11: -0.2176 S12: -0.7611 S13: -0.4321 REMARK 3 S21: 0.2356 S22: 0.4130 S23: 0.1542 REMARK 3 S31: 0.0653 S32: -0.2750 S33: -0.1531 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200006989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27294 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 48.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.05600 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FBZ, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-ACETATE (PH 5.0) 13% (W/V) REMARK 280 PEG 6000 10 MM ZNCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.00800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.37750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.00800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.37750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 31 REMARK 465 PRO A 32 REMARK 465 HIS A 33 REMARK 465 MET A 34 REMARK 465 TRP A 104 REMARK 465 GLU A 105 REMARK 465 ASP A 106 REMARK 465 ASP A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 SER B 15 REMARK 465 LEU B 16 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 HIS B 48 REMARK 465 HIS B 49 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 144 HH22 ARG A 177 1.59 REMARK 500 O HOH A 507 O HOH A 555 1.97 REMARK 500 O HOH A 497 O HOH A 532 1.98 REMARK 500 OE2 GLU A 128 O HOH A 401 2.02 REMARK 500 O HOH A 401 O HOH A 419 2.03 REMARK 500 OE1 GLN B 38 O HOH B 201 2.07 REMARK 500 OE2 GLU A 173 O HOH A 402 2.08 REMARK 500 O HOH A 479 O HOH A 541 2.10 REMARK 500 OE2 GLU A 144 O HOH A 403 2.10 REMARK 500 O HOH A 498 O HOH A 536 2.12 REMARK 500 O HOH A 423 O HOH A 505 2.14 REMARK 500 O HOH A 519 O HOH A 540 2.15 REMARK 500 O HOH A 482 O HOH A 538 2.16 REMARK 500 OE2 GLU B 8 O HOH B 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 520 O HOH A 539 4546 2.11 REMARK 500 O HOH A 506 O HOH A 512 4546 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 69 10.99 -143.11 REMARK 500 LYS A 90 6.26 80.25 REMARK 500 ASP A 99 32.22 -90.40 REMARK 500 ARG A 120 -126.49 48.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 83 OE1 REMARK 620 2 GLU A 83 OE2 60.8 REMARK 620 3 GLU A 83 OE1 0.0 60.8 REMARK 620 4 HOH A 419 O 95.0 83.7 95.0 REMARK 620 5 HOH A 422 O 82.2 97.3 82.2 176.1 REMARK 620 6 HOH A 495 O 160.6 105.8 160.6 97.3 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD2 REMARK 620 2 HIS A 193 NE2 114.8 REMARK 620 3 HIS B 39 NE2 162.1 71.6 REMARK 620 4 GLU B 44 OE1 156.1 74.3 6.0 REMARK 620 5 GLU B 44 OE2 157.9 74.5 4.4 2.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 101 DBREF 6FC3 A 35 213 UNP P07260 IF4E_YEAST 35 213 DBREF 6FC3 B 1 49 UNP P12962 CAF20_YEAST 1 49 SEQADV 6FC3 GLY A 31 UNP P07260 EXPRESSION TAG SEQADV 6FC3 PRO A 32 UNP P07260 EXPRESSION TAG SEQADV 6FC3 HIS A 33 UNP P07260 EXPRESSION TAG SEQADV 6FC3 MET A 34 UNP P07260 EXPRESSION TAG SEQADV 6FC3 ALA A 42 UNP P07260 LYS 42 ENGINEERED MUTATION SEQADV 6FC3 ALA A 168 UNP P07260 LYS 168 ENGINEERED MUTATION SEQADV 6FC3 ALA A 187 UNP P07260 LYS 187 ENGINEERED MUTATION SEQADV 6FC3 GLY B -2 UNP P12962 EXPRESSION TAG SEQADV 6FC3 PRO B -1 UNP P12962 EXPRESSION TAG SEQADV 6FC3 HIS B 0 UNP P12962 EXPRESSION TAG SEQRES 1 A 183 GLY PRO HIS MET VAL LYS HIS PRO LEU ASN THR ALA TRP SEQRES 2 A 183 THR LEU TRP TYR THR LYS PRO ALA VAL ASP LYS SER GLU SEQRES 3 A 183 SER TRP SER ASP LEU LEU ARG PRO VAL THR SER PHE GLN SEQRES 4 A 183 THR VAL GLU GLU PHE TRP ALA ILE ILE GLN ASN ILE PRO SEQRES 5 A 183 GLU PRO HIS GLU LEU PRO LEU LYS SER ASP TYR HIS VAL SEQRES 6 A 183 PHE ARG ASN ASP VAL ARG PRO GLU TRP GLU ASP GLU ALA SEQRES 7 A 183 ASN ALA LYS GLY GLY LYS TRP SER PHE GLN LEU ARG GLY SEQRES 8 A 183 LYS GLY ALA ASP ILE ASP GLU LEU TRP LEU ARG THR LEU SEQRES 9 A 183 LEU ALA VAL ILE GLY GLU THR ILE ASP GLU ASP ASP SER SEQRES 10 A 183 GLN ILE ASN GLY VAL VAL LEU SER ILE ARG LYS GLY GLY SEQRES 11 A 183 ASN LYS PHE ALA LEU TRP THR ALA SER GLU ASP LYS GLU SEQRES 12 A 183 PRO LEU LEU ARG ILE GLY GLY LYS PHE LYS GLN VAL LEU SEQRES 13 A 183 ALA LEU THR ASP ASP GLY HIS LEU GLU PHE PHE PRO HIS SEQRES 14 A 183 SER SER ALA ASN GLY ARG HIS PRO GLN PRO SER ILE THR SEQRES 15 A 183 LEU SEQRES 1 B 52 GLY PRO HIS MET ILE LYS TYR THR ILE ASP GLU LEU PHE SEQRES 2 B 52 GLN LEU LYS PRO SER LEU THR LEU GLU VAL ASN PHE ASP SEQRES 3 B 52 ALA VAL GLU PHE ARG ALA ILE ILE GLU LYS VAL LYS GLN SEQRES 4 B 52 LEU GLN HIS LEU LYS GLU GLU GLU PHE ASN SER HIS HIS HET ZN A 301 1 HET GOL A 302 14 HET ZN B 101 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *210(H2 O) HELIX 1 1 VAL A 71 GLN A 79 1 9 HELIX 2 2 ILE A 126 ILE A 138 1 13 HELIX 3 3 LYS A 172 VAL A 185 1 14 HELIX 4 4 ILE B 6 GLN B 11 1 6 HELIX 5 5 ALA B 24 LYS B 41 1 18 SHEET 1 1 1 PRO A 38 THR A 48 0 SHEET 1 2 1 LEU A 62 THR A 70 0 SHEET 1 3 1 ASP A 92 ARG A 97 0 SHEET 1 4 1 GLY A 113 GLN A 118 0 SHEET 1 5 1 ILE A 149 SER A 155 0 SHEET 1 6 1 LYS A 162 THR A 167 0 SHEET 1 7 1 LEU A 194 PRO A 198 0 SHEET 1 8 1 ILE A 211 THR A 212 0 LINK OE1 GLU A 83 ZN ZN A 301 1555 1555 2.22 LINK OE2 GLU A 83 ZN ZN A 301 1555 1555 2.09 LINK OE1 GLU A 83 ZN ZN A 301 1555 2656 2.11 LINK OD2 ASP A 190 ZN ZN B 101 1555 2656 2.02 LINK NE2 HIS A 193 ZN ZN B 101 1555 2656 2.02 LINK ZN ZN A 301 O HOH A 419 1555 1555 2.25 LINK ZN ZN A 301 O HOH A 422 1555 2656 2.23 LINK ZN ZN A 301 O HOH A 495 1555 2656 1.76 LINK NE2 HIS B 39 ZN ZN B 101 1555 1555 2.04 LINK OE1 GLU B 44 ZN ZN B 101 1555 1555 1.94 LINK OE2 GLU B 44 ZN ZN B 101 1555 1555 2.56 SITE 1 AC1 4 GLU A 83 HOH A 419 HOH A 422 HOH A 495 SITE 1 AC2 3 TRP A 46 ARG A 205 HIS A 206 SITE 1 AC3 4 ASP A 190 HIS A 193 HIS B 39 GLU B 44 CRYST1 102.016 62.755 44.732 90.00 106.99 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009802 0.000000 0.002995 0.00000 SCALE2 0.000000 0.015935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023375 0.00000