HEADER NUCLEAR PROTEIN 20-DEC-17 6FCM TITLE CRYSTAL STRUCTURE OF HUMAN PCNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, C, E; COMPND 4 SYNONYM: PCNA,CYCLIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROLIFERATING CELL NUCLEAR ANTIGEN, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.HOUSSET,P.FRACHET REVDAT 5 16-OCT-24 6FCM 1 REMARK REVDAT 4 17-JAN-24 6FCM 1 REMARK REVDAT 3 13-NOV-19 6FCM 1 JRNL REVDAT 2 18-SEP-19 6FCM 1 JRNL REVDAT 1 30-JAN-19 6FCM 0 JRNL AUTH D.OHAYON,A.DE CHIARA,P.M.DANG,N.THIEBLEMONT,S.CHATFIELD, JRNL AUTH 2 V.MARZAIOLI,S.S.BURGENER,J.MOCEK,C.CANDALH,C.PINTARD, JRNL AUTH 3 P.TACNET-DELORME,G.RENAULT,I.LAGOUTTE,M.FAVIER,F.WALKER, JRNL AUTH 4 M.HURTADO-NEDELEC,D.DESPLANCQ,E.WEISS,C.BENARAFA,D.HOUSSET, JRNL AUTH 5 J.C.MARIE,P.FRACHET,J.EL-BENNA,V.WITKO-SARSAT JRNL TITL CYTOSOLIC PCNA INTERACTS WITH P47PHOX AND CONTROLS NADPH JRNL TITL 2 OXIDASE NOX2 ACTIVATION IN NEUTROPHILS. JRNL REF J.EXP.MED. V. 216 2669 2019 JRNL REFN ESSN 1540-9538 JRNL PMID 31492810 JRNL DOI 10.1084/JEM.20180371 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 20676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1061 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1151 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 95.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.430 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.378 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.550 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5859 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5541 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7913 ; 1.310 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12896 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 749 ; 7.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;44.225 ;25.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1083 ;18.012 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 939 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6444 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1064 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3014 ; 4.588 ; 8.789 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3013 ; 4.586 ; 8.788 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3757 ; 7.436 ;13.167 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3758 ; 7.435 ;13.168 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2845 ; 4.474 ; 9.238 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2845 ; 4.471 ; 9.239 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4156 ; 7.359 ;13.679 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5756 ;10.665 ;98.915 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5757 ;10.665 ;98.924 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MAY 1, 2016 REMARK 200 BUILT=20160617 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION MAY 1, 2016 REMARK 200 BUILT=20160617 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23289 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.430 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.03 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 1AXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19 TO 23% PEG 3350, 0.2 TO 0.3 M NACL, REMARK 280 0.1 M TRIS-HCL PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.59000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.59000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 SER A 186 REMARK 465 ASN A 187 REMARK 465 VAL A 188 REMARK 465 ASP A 189 REMARK 465 LYS A 190 REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 MET C -20 REMARK 465 GLY C -19 REMARK 465 SER C -18 REMARK 465 SER C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 GLY C -8 REMARK 465 LEU C -7 REMARK 465 VAL C -6 REMARK 465 PRO C -5 REMARK 465 ARG C -4 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 VAL C 188 REMARK 465 ASP C 189 REMARK 465 ASP C 257 REMARK 465 GLU C 258 REMARK 465 GLU C 259 REMARK 465 GLY C 260 REMARK 465 SER C 261 REMARK 465 MET E -20 REMARK 465 GLY E -19 REMARK 465 SER E -18 REMARK 465 SER E -17 REMARK 465 HIS E -16 REMARK 465 HIS E -15 REMARK 465 HIS E -14 REMARK 465 HIS E -13 REMARK 465 HIS E -12 REMARK 465 HIS E -11 REMARK 465 SER E -10 REMARK 465 SER E -9 REMARK 465 GLY E -8 REMARK 465 LEU E -7 REMARK 465 VAL E -6 REMARK 465 PRO E -5 REMARK 465 ARG E -4 REMARK 465 GLY E -3 REMARK 465 SER E -2 REMARK 465 HIS E -1 REMARK 465 MET E 0 REMARK 465 ASN E 187 REMARK 465 VAL E 188 REMARK 465 ASP E 189 REMARK 465 LYS E 190 REMARK 465 GLU E 256 REMARK 465 ASP E 257 REMARK 465 GLU E 258 REMARK 465 GLU E 259 REMARK 465 GLY E 260 REMARK 465 SER E 261 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 ASP A 232 CG OD1 OD2 REMARK 470 ILE A 255 CG1 CG2 CD1 REMARK 470 GLU C 198 CG CD OE1 OE2 REMARK 470 ASP C 232 CG OD1 OD2 REMARK 470 GLU C 256 CG CD OE1 OE2 REMARK 470 GLU E 198 CG CD OE1 OE2 REMARK 470 ASP E 232 CG OD1 OD2 REMARK 470 ILE E 255 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 95 60.93 -152.38 REMARK 500 ASN A 107 -61.79 -124.10 REMARK 500 GLN A 108 80.95 -61.99 REMARK 500 GLU A 109 49.79 20.71 REMARK 500 PRO A 220 -9.85 -59.23 REMARK 500 ASP A 243 35.38 76.63 REMARK 500 MET A 244 -51.71 -171.32 REMARK 500 LYS C 20 -38.10 -37.69 REMARK 500 SER C 42 -38.26 -39.05 REMARK 500 VAL C 45 -49.55 -136.67 REMARK 500 ARG C 61 106.59 -164.48 REMARK 500 ASP C 97 47.13 -100.59 REMARK 500 ASP C 122 44.11 -108.30 REMARK 500 SER C 186 160.40 74.47 REMARK 500 GLU C 191 -165.07 68.41 REMARK 500 GLU C 193 47.60 -94.47 REMARK 500 ASP C 243 40.34 78.59 REMARK 500 MET C 244 -48.37 -172.31 REMARK 500 HIS E 44 23.31 49.90 REMARK 500 ASP E 94 -126.14 29.86 REMARK 500 ASN E 95 56.08 -94.10 REMARK 500 ASP E 97 49.91 -98.51 REMARK 500 GLN E 108 10.71 84.73 REMARK 500 ASN E 179 92.25 -161.41 REMARK 500 MET E 244 -35.04 179.72 REMARK 500 PRO E 253 -178.66 -66.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AXC RELATED DB: PDB REMARK 900 SAME PROTEIN, IN COMPLEX WITH P21 PEPTIDE DBREF 6FCM A 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 6FCM C 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 6FCM E 1 261 UNP P12004 PCNA_HUMAN 1 261 SEQADV 6FCM MET A -20 UNP P12004 INITIATING METHIONINE SEQADV 6FCM GLY A -19 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER A -18 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER A -17 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS A -16 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS A -15 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS A -14 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS A -13 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS A -12 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS A -11 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER A -10 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER A -9 UNP P12004 EXPRESSION TAG SEQADV 6FCM GLY A -8 UNP P12004 EXPRESSION TAG SEQADV 6FCM LEU A -7 UNP P12004 EXPRESSION TAG SEQADV 6FCM VAL A -6 UNP P12004 EXPRESSION TAG SEQADV 6FCM PRO A -5 UNP P12004 EXPRESSION TAG SEQADV 6FCM ARG A -4 UNP P12004 EXPRESSION TAG SEQADV 6FCM GLY A -3 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER A -2 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS A -1 UNP P12004 EXPRESSION TAG SEQADV 6FCM MET A 0 UNP P12004 EXPRESSION TAG SEQADV 6FCM MET C -20 UNP P12004 INITIATING METHIONINE SEQADV 6FCM GLY C -19 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER C -18 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER C -17 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS C -16 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS C -15 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS C -14 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS C -13 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS C -12 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS C -11 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER C -10 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER C -9 UNP P12004 EXPRESSION TAG SEQADV 6FCM GLY C -8 UNP P12004 EXPRESSION TAG SEQADV 6FCM LEU C -7 UNP P12004 EXPRESSION TAG SEQADV 6FCM VAL C -6 UNP P12004 EXPRESSION TAG SEQADV 6FCM PRO C -5 UNP P12004 EXPRESSION TAG SEQADV 6FCM ARG C -4 UNP P12004 EXPRESSION TAG SEQADV 6FCM GLY C -3 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER C -2 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS C -1 UNP P12004 EXPRESSION TAG SEQADV 6FCM MET C 0 UNP P12004 EXPRESSION TAG SEQADV 6FCM MET E -20 UNP P12004 INITIATING METHIONINE SEQADV 6FCM GLY E -19 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER E -18 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER E -17 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS E -16 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS E -15 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS E -14 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS E -13 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS E -12 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS E -11 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER E -10 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER E -9 UNP P12004 EXPRESSION TAG SEQADV 6FCM GLY E -8 UNP P12004 EXPRESSION TAG SEQADV 6FCM LEU E -7 UNP P12004 EXPRESSION TAG SEQADV 6FCM VAL E -6 UNP P12004 EXPRESSION TAG SEQADV 6FCM PRO E -5 UNP P12004 EXPRESSION TAG SEQADV 6FCM ARG E -4 UNP P12004 EXPRESSION TAG SEQADV 6FCM GLY E -3 UNP P12004 EXPRESSION TAG SEQADV 6FCM SER E -2 UNP P12004 EXPRESSION TAG SEQADV 6FCM HIS E -1 UNP P12004 EXPRESSION TAG SEQADV 6FCM MET E 0 UNP P12004 EXPRESSION TAG SEQRES 1 A 282 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 282 LEU VAL PRO ARG GLY SER HIS MET MET PHE GLU ALA ARG SEQRES 3 A 282 LEU VAL GLN GLY SER ILE LEU LYS LYS VAL LEU GLU ALA SEQRES 4 A 282 LEU LYS ASP LEU ILE ASN GLU ALA CYS TRP ASP ILE SER SEQRES 5 A 282 SER SER GLY VAL ASN LEU GLN SER MET ASP SER SER HIS SEQRES 6 A 282 VAL SER LEU VAL GLN LEU THR LEU ARG SER GLU GLY PHE SEQRES 7 A 282 ASP THR TYR ARG CYS ASP ARG ASN LEU ALA MET GLY VAL SEQRES 8 A 282 ASN LEU THR SER MET SER LYS ILE LEU LYS CYS ALA GLY SEQRES 9 A 282 ASN GLU ASP ILE ILE THR LEU ARG ALA GLU ASP ASN ALA SEQRES 10 A 282 ASP THR LEU ALA LEU VAL PHE GLU ALA PRO ASN GLN GLU SEQRES 11 A 282 LYS VAL SER ASP TYR GLU MET LYS LEU MET ASP LEU ASP SEQRES 12 A 282 VAL GLU GLN LEU GLY ILE PRO GLU GLN GLU TYR SER CYS SEQRES 13 A 282 VAL VAL LYS MET PRO SER GLY GLU PHE ALA ARG ILE CYS SEQRES 14 A 282 ARG ASP LEU SER HIS ILE GLY ASP ALA VAL VAL ILE SER SEQRES 15 A 282 CYS ALA LYS ASP GLY VAL LYS PHE SER ALA SER GLY GLU SEQRES 16 A 282 LEU GLY ASN GLY ASN ILE LYS LEU SER GLN THR SER ASN SEQRES 17 A 282 VAL ASP LYS GLU GLU GLU ALA VAL THR ILE GLU MET ASN SEQRES 18 A 282 GLU PRO VAL GLN LEU THR PHE ALA LEU ARG TYR LEU ASN SEQRES 19 A 282 PHE PHE THR LYS ALA THR PRO LEU SER SER THR VAL THR SEQRES 20 A 282 LEU SER MET SER ALA ASP VAL PRO LEU VAL VAL GLU TYR SEQRES 21 A 282 LYS ILE ALA ASP MET GLY HIS LEU LYS TYR TYR LEU ALA SEQRES 22 A 282 PRO LYS ILE GLU ASP GLU GLU GLY SER SEQRES 1 C 282 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 282 LEU VAL PRO ARG GLY SER HIS MET MET PHE GLU ALA ARG SEQRES 3 C 282 LEU VAL GLN GLY SER ILE LEU LYS LYS VAL LEU GLU ALA SEQRES 4 C 282 LEU LYS ASP LEU ILE ASN GLU ALA CYS TRP ASP ILE SER SEQRES 5 C 282 SER SER GLY VAL ASN LEU GLN SER MET ASP SER SER HIS SEQRES 6 C 282 VAL SER LEU VAL GLN LEU THR LEU ARG SER GLU GLY PHE SEQRES 7 C 282 ASP THR TYR ARG CYS ASP ARG ASN LEU ALA MET GLY VAL SEQRES 8 C 282 ASN LEU THR SER MET SER LYS ILE LEU LYS CYS ALA GLY SEQRES 9 C 282 ASN GLU ASP ILE ILE THR LEU ARG ALA GLU ASP ASN ALA SEQRES 10 C 282 ASP THR LEU ALA LEU VAL PHE GLU ALA PRO ASN GLN GLU SEQRES 11 C 282 LYS VAL SER ASP TYR GLU MET LYS LEU MET ASP LEU ASP SEQRES 12 C 282 VAL GLU GLN LEU GLY ILE PRO GLU GLN GLU TYR SER CYS SEQRES 13 C 282 VAL VAL LYS MET PRO SER GLY GLU PHE ALA ARG ILE CYS SEQRES 14 C 282 ARG ASP LEU SER HIS ILE GLY ASP ALA VAL VAL ILE SER SEQRES 15 C 282 CYS ALA LYS ASP GLY VAL LYS PHE SER ALA SER GLY GLU SEQRES 16 C 282 LEU GLY ASN GLY ASN ILE LYS LEU SER GLN THR SER ASN SEQRES 17 C 282 VAL ASP LYS GLU GLU GLU ALA VAL THR ILE GLU MET ASN SEQRES 18 C 282 GLU PRO VAL GLN LEU THR PHE ALA LEU ARG TYR LEU ASN SEQRES 19 C 282 PHE PHE THR LYS ALA THR PRO LEU SER SER THR VAL THR SEQRES 20 C 282 LEU SER MET SER ALA ASP VAL PRO LEU VAL VAL GLU TYR SEQRES 21 C 282 LYS ILE ALA ASP MET GLY HIS LEU LYS TYR TYR LEU ALA SEQRES 22 C 282 PRO LYS ILE GLU ASP GLU GLU GLY SER SEQRES 1 E 282 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 E 282 LEU VAL PRO ARG GLY SER HIS MET MET PHE GLU ALA ARG SEQRES 3 E 282 LEU VAL GLN GLY SER ILE LEU LYS LYS VAL LEU GLU ALA SEQRES 4 E 282 LEU LYS ASP LEU ILE ASN GLU ALA CYS TRP ASP ILE SER SEQRES 5 E 282 SER SER GLY VAL ASN LEU GLN SER MET ASP SER SER HIS SEQRES 6 E 282 VAL SER LEU VAL GLN LEU THR LEU ARG SER GLU GLY PHE SEQRES 7 E 282 ASP THR TYR ARG CYS ASP ARG ASN LEU ALA MET GLY VAL SEQRES 8 E 282 ASN LEU THR SER MET SER LYS ILE LEU LYS CYS ALA GLY SEQRES 9 E 282 ASN GLU ASP ILE ILE THR LEU ARG ALA GLU ASP ASN ALA SEQRES 10 E 282 ASP THR LEU ALA LEU VAL PHE GLU ALA PRO ASN GLN GLU SEQRES 11 E 282 LYS VAL SER ASP TYR GLU MET LYS LEU MET ASP LEU ASP SEQRES 12 E 282 VAL GLU GLN LEU GLY ILE PRO GLU GLN GLU TYR SER CYS SEQRES 13 E 282 VAL VAL LYS MET PRO SER GLY GLU PHE ALA ARG ILE CYS SEQRES 14 E 282 ARG ASP LEU SER HIS ILE GLY ASP ALA VAL VAL ILE SER SEQRES 15 E 282 CYS ALA LYS ASP GLY VAL LYS PHE SER ALA SER GLY GLU SEQRES 16 E 282 LEU GLY ASN GLY ASN ILE LYS LEU SER GLN THR SER ASN SEQRES 17 E 282 VAL ASP LYS GLU GLU GLU ALA VAL THR ILE GLU MET ASN SEQRES 18 E 282 GLU PRO VAL GLN LEU THR PHE ALA LEU ARG TYR LEU ASN SEQRES 19 E 282 PHE PHE THR LYS ALA THR PRO LEU SER SER THR VAL THR SEQRES 20 E 282 LEU SER MET SER ALA ASP VAL PRO LEU VAL VAL GLU TYR SEQRES 21 E 282 LYS ILE ALA ASP MET GLY HIS LEU LYS TYR TYR LEU ALA SEQRES 22 E 282 PRO LYS ILE GLU ASP GLU GLU GLY SER FORMUL 4 HOH *8(H2 O) HELIX 1 AA1 GLY A 9 LYS A 20 1 12 HELIX 2 AA2 GLU A 55 PHE A 57 5 3 HELIX 3 AA3 LEU A 72 CYS A 81 1 10 HELIX 4 AA4 SER A 141 SER A 152 1 12 HELIX 5 AA5 LEU A 209 THR A 216 1 8 HELIX 6 AA6 LYS A 217 SER A 222 5 6 HELIX 7 AA7 GLY C 9 LYS C 20 1 12 HELIX 8 AA8 GLU C 55 PHE C 57 5 3 HELIX 9 AA9 LEU C 72 CYS C 81 1 10 HELIX 10 AB1 SER C 141 SER C 152 1 12 HELIX 11 AB2 LEU C 209 THR C 216 1 8 HELIX 12 AB3 LYS C 217 SER C 222 5 6 HELIX 13 AB4 GLN E 8 LYS E 20 1 13 HELIX 14 AB5 GLU E 55 PHE E 57 5 3 HELIX 15 AB6 LEU E 72 LYS E 80 1 9 HELIX 16 AB7 SER E 141 GLY E 155 1 15 HELIX 17 AB8 LEU E 209 THR E 216 1 8 HELIX 18 AB9 LYS E 217 SER E 222 5 6 SHEET 1 AA1 9 THR A 59 CYS A 62 0 SHEET 2 AA1 9 PHE A 2 LEU A 6 -1 N GLU A 3 O ARG A 61 SHEET 3 AA1 9 ILE A 87 ALA A 92 -1 O ILE A 88 N LEU A 6 SHEET 4 AA1 9 THR A 98 GLU A 104 -1 O ALA A 100 N ARG A 91 SHEET 5 AA1 9 LYS A 110 LYS A 117 -1 O MET A 116 N LEU A 99 SHEET 6 AA1 9 GLY C 176 SER C 183 -1 O ASN C 177 N GLU A 115 SHEET 7 AA1 9 GLY C 166 GLY C 173 -1 N PHE C 169 O ILE C 180 SHEET 8 AA1 9 ALA C 157 CYS C 162 -1 N SER C 161 O LYS C 168 SHEET 9 AA1 9 VAL C 203 ALA C 208 -1 O PHE C 207 N VAL C 158 SHEET 1 AA2 9 LEU A 66 ASN A 71 0 SHEET 2 AA2 9 GLU A 25 SER A 31 -1 N TRP A 28 O MET A 68 SHEET 3 AA2 9 GLY A 34 MET A 40 -1 O ASN A 36 N ASP A 29 SHEET 4 AA2 9 SER A 46 ARG A 53 -1 O LEU A 50 N LEU A 37 SHEET 5 AA2 9 GLY A 245 LEU A 251 -1 O TYR A 250 N LEU A 47 SHEET 6 AA2 9 VAL A 233 ILE A 241 -1 N LEU A 235 O LEU A 251 SHEET 7 AA2 9 THR A 224 SER A 230 -1 N THR A 226 O GLU A 238 SHEET 8 AA2 9 CYS A 135 PRO A 140 -1 N VAL A 137 O LEU A 227 SHEET 9 AA2 9 THR A 196 ILE A 197 -1 O THR A 196 N LYS A 138 SHEET 1 AA3 8 VAL A 203 ALA A 208 0 SHEET 2 AA3 8 ALA A 157 CYS A 162 -1 N VAL A 158 O PHE A 207 SHEET 3 AA3 8 GLY A 166 SER A 172 -1 O LYS A 168 N SER A 161 SHEET 4 AA3 8 GLY A 176 SER A 183 -1 O ILE A 180 N PHE A 169 SHEET 5 AA3 8 LYS E 110 LYS E 117 -1 O GLU E 115 N ASN A 177 SHEET 6 AA3 8 THR E 98 GLU E 104 -1 N PHE E 103 O SER E 112 SHEET 7 AA3 8 ILE E 87 ALA E 92 -1 N THR E 89 O VAL E 102 SHEET 8 AA3 8 PHE E 2 LEU E 6 -1 N LEU E 6 O ILE E 88 SHEET 1 AA4 8 PHE C 2 LEU C 6 0 SHEET 2 AA4 8 ILE C 87 ALA C 92 -1 O ILE C 88 N LEU C 6 SHEET 3 AA4 8 THR C 98 GLU C 104 -1 O GLU C 104 N ILE C 87 SHEET 4 AA4 8 LYS C 110 LYS C 117 -1 O MET C 116 N LEU C 99 SHEET 5 AA4 8 GLY E 176 SER E 183 -1 O ASN E 177 N GLU C 115 SHEET 6 AA4 8 GLY E 166 GLY E 173 -1 N PHE E 169 O ILE E 180 SHEET 7 AA4 8 ALA E 157 CYS E 162 -1 N SER E 161 O LYS E 168 SHEET 8 AA4 8 VAL E 203 ALA E 208 -1 O LEU E 205 N ILE E 160 SHEET 1 AA5 9 LEU C 66 ASN C 71 0 SHEET 2 AA5 9 GLU C 25 ILE C 30 -1 N TRP C 28 O MET C 68 SHEET 3 AA5 9 GLY C 34 MET C 40 -1 O ASN C 36 N ASP C 29 SHEET 4 AA5 9 SER C 46 ARG C 53 -1 O LEU C 52 N VAL C 35 SHEET 5 AA5 9 GLY C 245 LEU C 251 -1 O TYR C 250 N LEU C 47 SHEET 6 AA5 9 LEU C 235 ILE C 241 -1 N LEU C 235 O LEU C 251 SHEET 7 AA5 9 THR C 224 MET C 229 -1 N THR C 226 O GLU C 238 SHEET 8 AA5 9 CYS C 135 PRO C 140 -1 N MET C 139 O VAL C 225 SHEET 9 AA5 9 THR C 196 ILE C 197 -1 O THR C 196 N LYS C 138 SHEET 1 AA6 9 ALA E 67 ASN E 71 0 SHEET 2 AA6 9 GLU E 25 ILE E 30 -1 N TRP E 28 O MET E 68 SHEET 3 AA6 9 GLY E 34 MET E 40 -1 O ASN E 36 N ASP E 29 SHEET 4 AA6 9 SER E 46 ARG E 53 -1 O LEU E 50 N LEU E 37 SHEET 5 AA6 9 GLY E 245 LEU E 251 -1 O TYR E 250 N LEU E 47 SHEET 6 AA6 9 LEU E 235 ILE E 241 -1 N LEU E 235 O LEU E 251 SHEET 7 AA6 9 THR E 224 MET E 229 -1 N THR E 226 O GLU E 238 SHEET 8 AA6 9 CYS E 135 PRO E 140 -1 N VAL E 137 O LEU E 227 SHEET 9 AA6 9 THR E 196 MET E 199 -1 O GLU E 198 N VAL E 136 SSBOND 1 CYS A 135 CYS A 162 1555 1555 2.05 SSBOND 2 CYS C 135 CYS C 162 1555 1555 2.05 CRYST1 39.180 140.060 169.970 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025523 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005883 0.00000