HEADER TRANSFERASE 21-DEC-17 6FD6 TITLE CRYSTAL STRUCTURE OF HUMAN APRT-TYR105PHE VARIANT IN COMPLEX WITH TITLE 2 ADENINE, PRPP AND MG2+, 30 DAYS POST CRYSTALLIZATION (WITH AMP AND TITLE 3 PPI PRODUCTS FULLY GENERATED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APRT; COMPND 5 EC: 2.4.2.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APRT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS ROSSMAN FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.NIOCHE,J.HUYET,M.OZEIR REVDAT 2 17-JAN-24 6FD6 1 REMARK REVDAT 1 15-AUG-18 6FD6 0 JRNL AUTH J.HUYET,M.OZEIR,M.C.BURGEVIN,B.PINSON,F.CHESNEY,J.M.REMY, JRNL AUTH 2 A.R.SIDDIQI,R.LUPOLI,G.PINON,C.SAINT-MARC,J.F.GIBERT, JRNL AUTH 3 R.MORALES,I.CEBALLOS-PICOT,R.BAROUKI,B.DAIGNAN-FORNIER, JRNL AUTH 4 A.OLIVIER-BANDINI,F.AUGE,P.NIOCHE JRNL TITL STRUCTURAL INSIGHTS INTO THE FORWARD AND REVERSE ENZYMATIC JRNL TITL 2 REACTIONS IN HUMAN ADENINE PHOSPHORIBOSYLTRANSFERASE. JRNL REF CELL CHEM BIOL V. 25 666 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 29576532 JRNL DOI 10.1016/J.CHEMBIOL.2018.02.011 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 28037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1510 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2116 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : -0.21000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : -0.10000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.574 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2980 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2875 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4065 ; 1.382 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6675 ; 0.632 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 5.673 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;30.419 ;23.279 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;12.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.784 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3281 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 603 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6609 3.3335 13.1309 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.0030 REMARK 3 T33: 0.0118 T12: -0.0041 REMARK 3 T13: 0.0049 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.1069 L22: 0.7644 REMARK 3 L33: 0.8068 L12: -0.0431 REMARK 3 L13: -0.4915 L23: 0.0307 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: -0.0432 S13: 0.1122 REMARK 3 S21: -0.0314 S22: -0.0046 S23: -0.0212 REMARK 3 S31: -0.0799 S32: 0.0430 S33: -0.0434 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): -27.4356 -11.8379 -1.0423 REMARK 3 T TENSOR REMARK 3 T11: 0.0039 T22: 0.0124 REMARK 3 T33: 0.0099 T12: -0.0030 REMARK 3 T13: 0.0029 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.9838 L22: 0.5573 REMARK 3 L33: 0.5995 L12: -0.0801 REMARK 3 L13: -0.1763 L23: 0.0591 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: 0.0875 S13: -0.0826 REMARK 3 S21: -0.0251 S22: -0.0124 S23: 0.0288 REMARK 3 S31: 0.0186 S32: -0.0666 S33: 0.0344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29551 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LN6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAOAC, PEG4000, GLYCEROL, TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 309 O HOH A 320 1.83 REMARK 500 O3' AMP A 200 O HOH A 301 1.98 REMARK 500 OE2 GLU B 180 O HOH B 301 2.02 REMARK 500 O2' AMP A 200 O HOH A 301 2.02 REMARK 500 O HOH A 333 O HOH A 363 2.07 REMARK 500 O HOH B 326 O HOH B 382 2.10 REMARK 500 O HOH A 361 O HOH A 380 2.12 REMARK 500 O GLY A 23 O HOH A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 104 -115.61 49.70 REMARK 500 ALA A 131 -104.84 -115.16 REMARK 500 SER B 100 -157.08 -85.75 REMARK 500 TYR B 101 106.85 143.33 REMARK 500 GLU B 104 -136.35 64.39 REMARK 500 ALA B 131 -103.32 -113.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP B 201 O3' REMARK 620 2 AMP B 201 O2' 62.9 REMARK 620 3 PPV B 203 O21 84.2 83.0 REMARK 620 4 PPV B 203 O22 164.7 129.3 88.1 REMARK 620 5 HOH B 304 O 93.5 111.0 163.1 90.0 REMARK 620 6 HOH B 333 O 76.9 136.0 75.7 88.4 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PPV A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PPV B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FCH RELATED DB: PDB REMARK 900 RELATED ID: 6FCI RELATED DB: PDB REMARK 900 RELATED ID: 6FCL RELATED DB: PDB REMARK 900 RELATED ID: 6FD4 RELATED DB: PDB REMARK 900 RELATED ID: 6FD5 RELATED DB: PDB DBREF 6FD6 A 3 180 UNP P07741 APT_HUMAN 3 180 DBREF 6FD6 B 3 180 UNP P07741 APT_HUMAN 3 180 SEQADV 6FD6 PHE A 105 UNP P07741 TYR 105 CONFLICT SEQADV 6FD6 PHE B 105 UNP P07741 TYR 105 CONFLICT SEQRES 1 A 178 ASP SER GLU LEU GLN LEU VAL GLU GLN ARG ILE ARG SER SEQRES 2 A 178 PHE PRO ASP PHE PRO THR PRO GLY VAL VAL PHE ARG ASP SEQRES 3 A 178 ILE SER PRO VAL LEU LYS ASP PRO ALA SER PHE ARG ALA SEQRES 4 A 178 ALA ILE GLY LEU LEU ALA ARG HIS LEU LYS ALA THR HIS SEQRES 5 A 178 GLY GLY ARG ILE ASP TYR ILE ALA GLY LEU ASP SER ARG SEQRES 6 A 178 GLY PHE LEU PHE GLY PRO SER LEU ALA GLN GLU LEU GLY SEQRES 7 A 178 LEU GLY CYS VAL LEU ILE ARG LYS ARG GLY LYS LEU PRO SEQRES 8 A 178 GLY PRO THR LEU TRP ALA SER TYR SER LEU GLU PHE GLY SEQRES 9 A 178 LYS ALA GLU LEU GLU ILE GLN LYS ASP ALA LEU GLU PRO SEQRES 10 A 178 GLY GLN ARG VAL VAL VAL VAL ASP ASP LEU LEU ALA THR SEQRES 11 A 178 GLY GLY THR MET ASN ALA ALA CYS GLU LEU LEU GLY ARG SEQRES 12 A 178 LEU GLN ALA GLU VAL LEU GLU CYS VAL SER LEU VAL GLU SEQRES 13 A 178 LEU THR SER LEU LYS GLY ARG GLU LYS LEU ALA PRO VAL SEQRES 14 A 178 PRO PHE PHE SER LEU LEU GLN TYR GLU SEQRES 1 B 178 ASP SER GLU LEU GLN LEU VAL GLU GLN ARG ILE ARG SER SEQRES 2 B 178 PHE PRO ASP PHE PRO THR PRO GLY VAL VAL PHE ARG ASP SEQRES 3 B 178 ILE SER PRO VAL LEU LYS ASP PRO ALA SER PHE ARG ALA SEQRES 4 B 178 ALA ILE GLY LEU LEU ALA ARG HIS LEU LYS ALA THR HIS SEQRES 5 B 178 GLY GLY ARG ILE ASP TYR ILE ALA GLY LEU ASP SER ARG SEQRES 6 B 178 GLY PHE LEU PHE GLY PRO SER LEU ALA GLN GLU LEU GLY SEQRES 7 B 178 LEU GLY CYS VAL LEU ILE ARG LYS ARG GLY LYS LEU PRO SEQRES 8 B 178 GLY PRO THR LEU TRP ALA SER TYR SER LEU GLU PHE GLY SEQRES 9 B 178 LYS ALA GLU LEU GLU ILE GLN LYS ASP ALA LEU GLU PRO SEQRES 10 B 178 GLY GLN ARG VAL VAL VAL VAL ASP ASP LEU LEU ALA THR SEQRES 11 B 178 GLY GLY THR MET ASN ALA ALA CYS GLU LEU LEU GLY ARG SEQRES 12 B 178 LEU GLN ALA GLU VAL LEU GLU CYS VAL SER LEU VAL GLU SEQRES 13 B 178 LEU THR SER LEU LYS GLY ARG GLU LYS LEU ALA PRO VAL SEQRES 14 B 178 PRO PHE PHE SER LEU LEU GLN TYR GLU HET AMP A 200 23 HET PPV A 201 9 HET AMP B 201 23 HET MG B 202 1 HET PPV B 203 9 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PPV PYROPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 PPV 2(H4 O7 P2) FORMUL 6 MG MG 2+ FORMUL 8 HOH *179(H2 O) HELIX 1 AA1 ASP A 3 GLN A 11 1 9 HELIX 2 AA2 ILE A 29 ASP A 35 1 7 HELIX 3 AA3 ASP A 35 GLY A 55 1 21 HELIX 4 AA4 SER A 66 LEU A 70 5 5 HELIX 5 AA5 PHE A 71 GLY A 80 1 10 HELIX 6 AA6 GLY A 133 LEU A 146 1 14 HELIX 7 AA7 LYS A 163 ALA A 169 1 7 HELIX 8 AA8 SER B 4 GLN B 11 1 8 HELIX 9 AA9 ILE B 29 ASP B 35 1 7 HELIX 10 AB1 ASP B 35 GLY B 55 1 21 HELIX 11 AB2 SER B 66 LEU B 70 5 5 HELIX 12 AB3 PHE B 71 LEU B 79 1 9 HELIX 13 AB4 GLY B 133 LEU B 146 1 14 HELIX 14 AB5 LYS B 163 ALA B 169 1 7 SHEET 1 AA1 2 ARG A 14 PRO A 17 0 SHEET 2 AA1 2 VAL A 25 ASP A 28 -1 O ASP A 28 N ARG A 14 SHEET 1 AA2 7 THR A 96 LEU A 103 0 SHEET 2 AA2 7 GLY A 106 GLN A 113 -1 O GLY A 106 N LEU A 103 SHEET 3 AA2 7 GLY A 82 LYS A 88 -1 N ARG A 87 O GLU A 111 SHEET 4 AA2 7 TYR A 60 LEU A 64 1 N ILE A 61 O VAL A 84 SHEET 5 AA2 7 ARG A 122 LEU A 130 1 O VAL A 124 N ALA A 62 SHEET 6 AA2 7 GLU A 149 LEU A 159 1 O VAL A 154 N VAL A 125 SHEET 7 AA2 7 PHE A 173 TYR A 179 1 O TYR A 179 N GLU A 158 SHEET 1 AA3 2 ARG B 14 PRO B 17 0 SHEET 2 AA3 2 VAL B 25 ASP B 28 -1 O ASP B 28 N ARG B 14 SHEET 1 AA4 7 THR B 96 ALA B 99 0 SHEET 2 AA4 7 LEU B 110 GLN B 113 -1 O LEU B 110 N ALA B 99 SHEET 3 AA4 7 GLY B 82 LYS B 88 -1 N ARG B 87 O GLU B 111 SHEET 4 AA4 7 TYR B 60 LEU B 64 1 N ILE B 61 O VAL B 84 SHEET 5 AA4 7 ARG B 122 LEU B 130 1 O VAL B 124 N ALA B 62 SHEET 6 AA4 7 GLU B 149 LEU B 159 1 O VAL B 154 N VAL B 125 SHEET 7 AA4 7 PHE B 173 TYR B 179 1 O TYR B 179 N GLU B 158 LINK O3' AMP B 201 MG MG B 202 1555 1555 2.25 LINK O2' AMP B 201 MG MG B 202 1555 1555 2.75 LINK MG MG B 202 O21 PPV B 203 1555 1555 1.78 LINK MG MG B 202 O22 PPV B 203 1555 1555 2.16 LINK MG MG B 202 O HOH B 304 1555 1555 2.18 LINK MG MG B 202 O HOH B 333 1555 1555 2.53 CISPEP 1 PHE A 19 PRO A 20 0 5.28 CISPEP 2 ASP A 65 SER A 66 0 2.09 CISPEP 3 ASP A 65 SER A 66 0 2.09 CISPEP 4 ALA A 169 PRO A 170 0 10.79 CISPEP 5 PHE B 19 PRO B 20 0 4.43 CISPEP 6 ASP B 65 SER B 66 0 2.88 CISPEP 7 ASP B 65 SER B 66 0 3.41 CISPEP 8 ALA B 169 PRO B 170 0 13.04 SITE 1 AC1 19 VAL A 25 PHE A 26 ARG A 27 ARG A 67 SITE 2 AC1 19 ASP A 127 ASP A 128 LEU A 129 ALA A 131 SITE 3 AC1 19 THR A 132 GLY A 133 GLY A 134 THR A 135 SITE 4 AC1 19 LEU A 159 PPV A 201 HOH A 301 HOH A 311 SITE 5 AC1 19 HOH A 312 HOH A 340 HOH A 349 SITE 1 AC2 6 SER A 66 ARG A 67 AMP A 200 HOH A 315 SITE 2 AC2 6 ARG B 87 LYS B 91 SITE 1 AC3 20 VAL B 25 PHE B 26 ARG B 27 ARG B 67 SITE 2 AC3 20 ASP B 127 ASP B 128 LEU B 129 ALA B 131 SITE 3 AC3 20 THR B 132 GLY B 133 GLY B 134 THR B 135 SITE 4 AC3 20 LEU B 159 MG B 202 PPV B 203 HOH B 323 SITE 5 AC3 20 HOH B 333 HOH B 336 HOH B 340 HOH B 343 SITE 1 AC4 4 AMP B 201 PPV B 203 HOH B 304 HOH B 333 SITE 1 AC5 11 ARG A 87 LYS A 91 SER B 66 ARG B 67 SITE 2 AC5 11 LYS B 88 AMP B 201 MG B 202 HOH B 303 SITE 3 AC5 11 HOH B 304 HOH B 333 HOH B 344 CRYST1 47.170 47.790 47.920 76.93 61.50 69.41 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021200 -0.007964 -0.010974 0.00000 SCALE2 0.000000 0.022353 -0.001589 0.00000 SCALE3 0.000000 0.000000 0.023806 0.00000