HEADER HYDROLASE 27-DEC-17 6FDX TITLE CRYSTAL STRUCTURE OF T. BRUCEI PDE-B1 CATALYTIC DOMAIN WITH INHIBITOR TITLE 2 NPD-1086 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.4.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RESIDUES 565-918 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: PDEB1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PARASITIC PHOSPHODIESTERASE, HYDROLASE, AFRICAN TRYPANOSOMIASIS, KEYWDS 2 SLEEPING SICKNESS EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,D.G.BROWN REVDAT 1 10-APR-19 6FDX 0 JRNL AUTH I.G.SALADO,C.MORENO,G.SAKAINE,A.K.SINGH,A.R.BLAAZER, JRNL AUTH 2 M.SIDERIUS,A.MATHEEUSSEN,S.GUL,L.MAES,R.LEURS,D.G.BROWN, JRNL AUTH 3 K.AUGUSTYNS JRNL TITL TBRPDEB1 STRUCTURE WITH INHIBITOR NPD-1086 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 34309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.58000 REMARK 3 B22 (A**2) : 1.73000 REMARK 3 B33 (A**2) : -4.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.269 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.738 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5472 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5061 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7398 ; 1.607 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11690 ; 1.032 ; 2.983 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 663 ; 6.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;35.826 ;23.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 933 ;17.343 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.035 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 829 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6130 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1181 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2658 ; 5.053 ; 6.472 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2659 ; 5.052 ; 6.473 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3319 ; 7.381 ; 9.697 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3320 ; 7.380 ; 9.699 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2814 ; 5.338 ; 6.901 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2813 ; 5.336 ; 6.899 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4080 ; 7.923 ;10.146 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6432 ;10.491 ;76.862 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6424 ;10.485 ;76.863 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 6FDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : CRL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 57.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.4 M SODIUM FORMATE, REMARK 280 0.3 M GUANIDINE, 0.1 M MES, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.05100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.19250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.05100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 58.19250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1120 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 559 REMARK 465 SER A 560 REMARK 465 HIS A 561 REMARK 465 MET A 562 REMARK 465 ALA A 563 REMARK 465 SER A 564 REMARK 465 GLU A 565 REMARK 465 LEU A 566 REMARK 465 ASN A 567 REMARK 465 GLU A 568 REMARK 465 HIS A 569 REMARK 465 ARG A 570 REMARK 465 ALA A 571 REMARK 465 THR A 572 REMARK 465 LEU A 573 REMARK 465 PHE A 574 REMARK 465 ASN A 575 REMARK 465 LYS A 576 REMARK 465 ASN A 577 REMARK 465 VAL A 578 REMARK 465 PRO A 579 REMARK 465 SER A 580 REMARK 465 ARG A 581 REMARK 465 ALA A 582 REMARK 465 VAL A 583 REMARK 465 LYS A 584 REMARK 465 ARG A 585 REMARK 465 GLY B 559 REMARK 465 SER B 560 REMARK 465 HIS B 561 REMARK 465 MET B 562 REMARK 465 ALA B 563 REMARK 465 SER B 564 REMARK 465 GLU B 565 REMARK 465 LEU B 566 REMARK 465 ASN B 567 REMARK 465 GLU B 568 REMARK 465 HIS B 569 REMARK 465 ARG B 570 REMARK 465 ALA B 571 REMARK 465 THR B 572 REMARK 465 LEU B 573 REMARK 465 PHE B 574 REMARK 465 ASN B 575 REMARK 465 LYS B 576 REMARK 465 ASN B 577 REMARK 465 VAL B 578 REMARK 465 PRO B 579 REMARK 465 SER B 580 REMARK 465 ARG B 581 REMARK 465 ALA B 582 REMARK 465 VAL B 583 REMARK 465 LYS B 584 REMARK 465 ARG B 585 REMARK 465 ARG B 918 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 709 O HOH A 1101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 603 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 587 -67.22 53.38 REMARK 500 ALA A 588 128.99 77.39 REMARK 500 THR A 590 153.73 70.50 REMARK 500 ARG A 594 -81.13 -46.89 REMARK 500 LEU A 602 69.63 36.60 REMARK 500 LYS A 623 65.45 -106.43 REMARK 500 ASN A 665 78.20 -110.36 REMARK 500 TYR A 668 -54.71 -129.03 REMARK 500 GLU A 725 47.58 36.93 REMARK 500 GLU A 853 -72.90 -41.97 REMARK 500 MET A 868 88.85 58.55 REMARK 500 GLU A 869 108.06 -51.79 REMARK 500 VAL A 881 -65.84 -104.30 REMARK 500 CYS A 893 -45.12 -171.55 REMARK 500 LEU A 894 61.54 -105.29 REMARK 500 ASP B 801 49.60 -108.71 REMARK 500 ASP B 805 67.83 111.51 REMARK 500 PHE B 830 -39.76 -33.24 REMARK 500 VAL B 881 -66.76 -123.63 REMARK 500 CYS B 893 -35.64 -169.94 REMARK 500 LEU B 894 57.73 -105.48 REMARK 500 GLU B 916 48.47 -82.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 673 NE2 REMARK 620 2 HIS A 709 NE2 100.3 REMARK 620 3 ASP A 710 OD2 92.4 77.5 REMARK 620 4 ASP A 822 OD1 89.0 87.1 164.5 REMARK 620 5 HOH A1109 O 168.1 90.2 84.6 97.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 710 OD1 REMARK 620 2 HOH A1101 O 76.7 REMARK 620 3 HOH A1110 O 87.2 163.7 REMARK 620 4 HOH A1146 O 166.8 116.4 79.6 REMARK 620 5 HOH A1148 O 97.6 99.5 80.1 79.3 REMARK 620 6 HOH A1109 O 82.7 103.2 76.7 95.1 156.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 673 NE2 REMARK 620 2 HIS B 709 NE2 96.2 REMARK 620 3 ASP B 710 OD2 101.0 93.1 REMARK 620 4 ASP B 822 OD1 77.6 85.8 178.1 REMARK 620 5 HOH B1146 O 86.7 169.0 96.7 84.5 REMARK 620 6 HOH B1106 O 162.5 99.7 85.4 96.3 76.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 710 OD1 REMARK 620 2 HOH B1156 O 102.0 REMARK 620 3 HOH B1110 O 78.7 176.4 REMARK 620 4 HOH B1123 O 95.6 96.3 87.2 REMARK 620 5 HOH B1132 O 164.8 93.0 86.2 85.3 REMARK 620 6 HOH B1106 O 95.1 87.8 88.6 167.5 82.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D5Z A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D5Z B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI B 1007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FDI RELATED DB: PDB REMARK 900 RELATED ID: 6FDS RELATED DB: PDB REMARK 900 RELATED ID: 6FDW RELATED DB: PDB DBREF 6FDX A 565 918 UNP Q8WQX9 Q8WQX9_9TRYP 565 918 DBREF 6FDX B 565 918 UNP Q8WQX9 Q8WQX9_9TRYP 565 918 SEQADV 6FDX GLY A 559 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX SER A 560 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX HIS A 561 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX MET A 562 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX ALA A 563 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX SER A 564 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX GLY B 559 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX SER B 560 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX HIS B 561 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX MET B 562 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX ALA B 563 UNP Q8WQX9 EXPRESSION TAG SEQADV 6FDX SER B 564 UNP Q8WQX9 EXPRESSION TAG SEQRES 1 A 360 GLY SER HIS MET ALA SER GLU LEU ASN GLU HIS ARG ALA SEQRES 2 A 360 THR LEU PHE ASN LYS ASN VAL PRO SER ARG ALA VAL LYS SEQRES 3 A 360 ARG VAL THR ALA ILE THR LYS VAL GLU ARG GLU ALA VAL SEQRES 4 A 360 LEU VAL CYS GLU LEU PRO SER PHE ASP VAL THR ASP VAL SEQRES 5 A 360 GLU PHE ASP LEU PHE ARG ALA ARG GLU SER THR ASP LYS SEQRES 6 A 360 PRO LEU ASP VAL ALA ALA ALA ILE ALA TYR ARG LEU LEU SEQRES 7 A 360 LEU GLY SER GLY LEU PRO GLN LYS PHE GLY CYS SER ASP SEQRES 8 A 360 GLU VAL LEU LEU ASN PHE ILE LEU GLN CYS ARG LYS LYS SEQRES 9 A 360 TYR ARG ASN VAL PRO TYR HIS ASN PHE TYR HIS VAL VAL SEQRES 10 A 360 ASP VAL CYS GLN THR ILE HIS THR PHE LEU TYR ARG GLY SEQRES 11 A 360 ASN VAL TYR GLU LYS LEU THR GLU LEU GLU CYS PHE VAL SEQRES 12 A 360 LEU LEU ILE THR ALA LEU VAL HIS ASP LEU ASP HIS MET SEQRES 13 A 360 GLY LEU ASN ASN SER PHE TYR LEU LYS THR GLU SER PRO SEQRES 14 A 360 LEU GLY ILE LEU SER SER ALA SER GLY ASN THR SER VAL SEQRES 15 A 360 LEU GLU VAL HIS HIS CYS ASN LEU ALA VAL GLU ILE LEU SEQRES 16 A 360 SER ASP PRO GLU SER ASP VAL PHE ASP GLY LEU GLU GLY SEQRES 17 A 360 ALA GLU ARG THR LEU ALA PHE ARG SER MET ILE ASP CYS SEQRES 18 A 360 VAL LEU ALA THR ASP MET ALA LYS HIS GLY SER ALA LEU SEQRES 19 A 360 GLU ALA PHE LEU ALA SER ALA ALA ASP GLN SER SER ASP SEQRES 20 A 360 GLU ALA ALA PHE HIS ARG MET THR MET GLU ILE ILE LEU SEQRES 21 A 360 LYS ALA GLY ASP ILE SER ASN VAL THR LYS PRO PHE ASP SEQRES 22 A 360 ILE SER ARG GLN TRP ALA MET ALA VAL THR GLU GLU PHE SEQRES 23 A 360 TYR ARG GLN GLY ASP MET GLU LYS GLU ARG GLY VAL GLU SEQRES 24 A 360 VAL LEU PRO MET PHE ASP ARG SER LYS ASN MET GLU LEU SEQRES 25 A 360 ALA LYS GLY GLN ILE GLY PHE ILE ASP PHE VAL ALA ALA SEQRES 26 A 360 PRO PHE PHE GLN LYS ILE VAL ASP ALA CYS LEU GLN GLY SEQRES 27 A 360 MET GLN TRP THR VAL ASP ARG ILE LYS SER ASN ARG ALA SEQRES 28 A 360 GLN TRP GLU ARG VAL LEU GLU THR ARG SEQRES 1 B 360 GLY SER HIS MET ALA SER GLU LEU ASN GLU HIS ARG ALA SEQRES 2 B 360 THR LEU PHE ASN LYS ASN VAL PRO SER ARG ALA VAL LYS SEQRES 3 B 360 ARG VAL THR ALA ILE THR LYS VAL GLU ARG GLU ALA VAL SEQRES 4 B 360 LEU VAL CYS GLU LEU PRO SER PHE ASP VAL THR ASP VAL SEQRES 5 B 360 GLU PHE ASP LEU PHE ARG ALA ARG GLU SER THR ASP LYS SEQRES 6 B 360 PRO LEU ASP VAL ALA ALA ALA ILE ALA TYR ARG LEU LEU SEQRES 7 B 360 LEU GLY SER GLY LEU PRO GLN LYS PHE GLY CYS SER ASP SEQRES 8 B 360 GLU VAL LEU LEU ASN PHE ILE LEU GLN CYS ARG LYS LYS SEQRES 9 B 360 TYR ARG ASN VAL PRO TYR HIS ASN PHE TYR HIS VAL VAL SEQRES 10 B 360 ASP VAL CYS GLN THR ILE HIS THR PHE LEU TYR ARG GLY SEQRES 11 B 360 ASN VAL TYR GLU LYS LEU THR GLU LEU GLU CYS PHE VAL SEQRES 12 B 360 LEU LEU ILE THR ALA LEU VAL HIS ASP LEU ASP HIS MET SEQRES 13 B 360 GLY LEU ASN ASN SER PHE TYR LEU LYS THR GLU SER PRO SEQRES 14 B 360 LEU GLY ILE LEU SER SER ALA SER GLY ASN THR SER VAL SEQRES 15 B 360 LEU GLU VAL HIS HIS CYS ASN LEU ALA VAL GLU ILE LEU SEQRES 16 B 360 SER ASP PRO GLU SER ASP VAL PHE ASP GLY LEU GLU GLY SEQRES 17 B 360 ALA GLU ARG THR LEU ALA PHE ARG SER MET ILE ASP CYS SEQRES 18 B 360 VAL LEU ALA THR ASP MET ALA LYS HIS GLY SER ALA LEU SEQRES 19 B 360 GLU ALA PHE LEU ALA SER ALA ALA ASP GLN SER SER ASP SEQRES 20 B 360 GLU ALA ALA PHE HIS ARG MET THR MET GLU ILE ILE LEU SEQRES 21 B 360 LYS ALA GLY ASP ILE SER ASN VAL THR LYS PRO PHE ASP SEQRES 22 B 360 ILE SER ARG GLN TRP ALA MET ALA VAL THR GLU GLU PHE SEQRES 23 B 360 TYR ARG GLN GLY ASP MET GLU LYS GLU ARG GLY VAL GLU SEQRES 24 B 360 VAL LEU PRO MET PHE ASP ARG SER LYS ASN MET GLU LEU SEQRES 25 B 360 ALA LYS GLY GLN ILE GLY PHE ILE ASP PHE VAL ALA ALA SEQRES 26 B 360 PRO PHE PHE GLN LYS ILE VAL ASP ALA CYS LEU GLN GLY SEQRES 27 B 360 MET GLN TRP THR VAL ASP ARG ILE LYS SER ASN ARG ALA SEQRES 28 B 360 GLN TRP GLU ARG VAL LEU GLU THR ARG HET ZN A1001 1 HET MG A1002 1 HET D5Z A1003 38 HET FMT A1004 3 HET FMT A1005 3 HET FMT A1006 3 HET GAI A1007 4 HET GAI A1008 4 HET ZN B1001 1 HET MG B1002 1 HET GAI B1003 4 HET D5Z B1004 38 HET FMT B1005 3 HET FMT B1006 3 HET GAI B1007 4 HET FMT B1008 3 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM D5Z (4AS,8AR)-2-[1-(2-AMINOQUINAZOLIN-4-YL)PIPERIDIN-4-YL]- HETNAM 2 D5Z 4-(3,4-DIMETHOXYPHENYL)-1,2,4A,5,8,8A- HETNAM 3 D5Z HEXAHYDROPHTHALAZIN-1-ONE HETNAM FMT FORMIC ACID HETNAM GAI GUANIDINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 D5Z 2(C29 H32 N6 O3) FORMUL 6 FMT 6(C H2 O2) FORMUL 9 GAI 4(C H5 N3) FORMUL 19 HOH *144(H2 O) HELIX 1 AA1 ILE A 589 VAL A 599 1 11 HELIX 2 AA2 ASP A 613 SER A 620 1 8 HELIX 3 AA3 LYS A 623 SER A 639 1 17 HELIX 4 AA4 GLY A 640 PHE A 645 1 6 HELIX 5 AA5 SER A 648 TYR A 663 1 16 HELIX 6 AA6 ASN A 670 ARG A 687 1 18 HELIX 7 AA7 ASN A 689 LEU A 694 5 6 HELIX 8 AA8 THR A 695 HIS A 709 1 15 HELIX 9 AA9 ASN A 717 THR A 724 1 8 HELIX 10 AB1 SER A 726 GLY A 736 1 11 HELIX 11 AB2 SER A 739 ASP A 755 1 17 HELIX 12 AB3 GLU A 765 ALA A 782 1 18 HELIX 13 AB4 THR A 783 ALA A 786 5 4 HELIX 14 AB5 LYS A 787 ALA A 800 1 14 HELIX 15 AB6 ASP A 805 ILE A 823 1 19 HELIX 16 AB7 SER A 824 LYS A 828 5 5 HELIX 17 AB8 PRO A 829 GLY A 855 1 27 HELIX 18 AB9 LEU A 859 ASP A 863 5 5 HELIX 19 AC1 GLU A 869 VAL A 881 1 13 HELIX 20 AC2 VAL A 881 CYS A 893 1 13 HELIX 21 AC3 LEU A 894 GLY A 896 5 3 HELIX 22 AC4 MET A 897 THR A 917 1 21 HELIX 23 AC5 THR B 590 VAL B 599 1 10 HELIX 24 AC6 ASP B 613 GLU B 619 1 7 HELIX 25 AC7 LYS B 623 SER B 639 1 17 HELIX 26 AC8 PRO B 642 GLY B 646 5 5 HELIX 27 AC9 SER B 648 LYS B 662 1 15 HELIX 28 AD1 ASN B 670 ARG B 687 1 18 HELIX 29 AD2 ASN B 689 LEU B 694 5 6 HELIX 30 AD3 THR B 695 HIS B 709 1 15 HELIX 31 AD4 ASN B 717 THR B 724 1 8 HELIX 32 AD5 SER B 726 GLY B 736 1 11 HELIX 33 AD6 SER B 739 ASP B 755 1 17 HELIX 34 AD7 GLU B 765 THR B 783 1 19 HELIX 35 AD8 ASP B 784 ALA B 786 5 3 HELIX 36 AD9 LYS B 787 ASP B 801 1 15 HELIX 37 AE1 ASP B 805 ILE B 823 1 19 HELIX 38 AE2 SER B 824 LYS B 828 5 5 HELIX 39 AE3 PRO B 829 GLY B 855 1 27 HELIX 40 AE4 LEU B 859 ASN B 867 5 9 HELIX 41 AE5 GLU B 869 VAL B 881 1 13 HELIX 42 AE6 VAL B 881 CYS B 893 1 13 HELIX 43 AE7 LEU B 894 GLY B 896 5 3 HELIX 44 AE8 MET B 897 GLU B 916 1 20 LINK NE2 HIS A 673 ZN ZN A1001 1555 1555 2.09 LINK NE2 HIS A 709 ZN ZN A1001 1555 1555 1.87 LINK OD1 ASP A 710 MG MG A1002 1555 1555 1.87 LINK OD2 ASP A 710 ZN ZN A1001 1555 1555 1.89 LINK OD1 ASP A 822 ZN ZN A1001 1555 1555 2.31 LINK NE2 HIS B 673 ZN ZN B1001 1555 1555 2.33 LINK NE2 HIS B 709 ZN ZN B1001 1555 1555 2.15 LINK OD1 ASP B 710 MG MG B1002 1555 1555 1.98 LINK OD2 ASP B 710 ZN ZN B1001 1555 1555 1.87 LINK OD1 ASP B 822 ZN ZN B1001 1555 1555 2.29 LINK ZN ZN A1001 O HOH A1109 1555 1555 1.88 LINK MG MG A1002 O HOH A1101 1555 1555 1.71 LINK MG MG A1002 O HOH A1110 1555 1555 1.83 LINK MG MG A1002 O HOH A1146 1555 1555 2.07 LINK MG MG A1002 O HOH A1148 1555 1555 2.17 LINK MG MG A1002 O HOH A1109 1555 1555 2.24 LINK ZN ZN B1001 O HOH B1146 1555 1555 2.32 LINK ZN ZN B1001 O HOH B1106 1555 1555 2.52 LINK MG MG B1002 O HOH B1156 1555 1555 1.97 LINK MG MG B1002 O HOH B1110 1555 1555 1.99 LINK MG MG B1002 O HOH B1123 1555 1555 2.07 LINK MG MG B1002 O HOH B1132 1555 1555 2.16 LINK MG MG B1002 O HOH B1106 1555 1555 1.90 SITE 1 AC1 6 HIS A 673 HIS A 709 ASP A 710 ASP A 822 SITE 2 AC1 6 HOH A1109 HOH A1162 SITE 1 AC2 6 ASP A 710 HOH A1101 HOH A1109 HOH A1110 SITE 2 AC2 6 HOH A1146 HOH A1148 SITE 1 AC3 10 MET A 785 ASP A 822 ASN A 825 ALA A 837 SITE 2 AC3 10 VAL A 840 MET A 861 GLN A 874 PHE A 877 SITE 3 AC3 10 VAL A 881 HOH A1112 SITE 1 AC4 4 PHE A 605 ASP A 606 ASP A 613 ARG A 616 SITE 1 AC5 1 GLU A 768 SITE 1 AC6 3 TYR A 691 LEU A 694 TYR B 691 SITE 1 AC7 6 LEU A 753 SER A 754 ASP A 759 ASP A 762 SITE 2 AC7 6 LEU A 915 HOH A1142 SITE 1 AC8 2 SER A 798 ASP A 801 SITE 1 AC9 6 HIS B 673 HIS B 709 ASP B 710 ASP B 822 SITE 2 AC9 6 HOH B1106 HOH B1146 SITE 1 AD1 6 ASP B 710 HOH B1106 HOH B1110 HOH B1123 SITE 2 AD1 6 HOH B1132 HOH B1156 SITE 1 AD2 1 VAL B 610 SITE 1 AD3 9 MET B 785 ASN B 825 ALA B 837 MET B 861 SITE 2 AD3 9 GLY B 873 GLN B 874 PHE B 877 PHE B 880 SITE 3 AD3 9 VAL B 881 SITE 1 AD4 3 ASP B 762 LEU B 764 ARG B 769 SITE 1 AD5 3 PHE B 605 ASP B 613 ARG B 616 SITE 1 AD6 5 LEU A 697 GLU A 768 ASN B 689 TYR B 691 SITE 2 AD6 5 GLU B 692 CRYST1 114.102 116.385 68.310 90.00 108.67 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008764 0.000000 0.002962 0.00000 SCALE2 0.000000 0.008592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015453 0.00000