HEADER HYDROLASE 02-JAN-18 6FEI OBSLTE 25-OCT-23 6FEI 8P7I TITLE PHOSPHOTRIESTERASE PTE_A53_1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARATHION HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOTRIESTERASE,PTE; COMPND 5 EC: 3.1.8.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS DIMINUTA; SOURCE 4 ORGANISM_TAXID: 293; SOURCE 5 GENE: OPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOENZYME, TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.DYM,N.AGGARWAL,S.ALBECK,T.UNGER,S.HAMER ROGOTNER,I.SILMAN,H.LEADER, AUTHOR 2 Y.ASHANI,M.GOLDSMITH,P.GREISEN,D.TAWFIK,L.J.SUSSMAN REVDAT 4 14-FEB-24 6FEI 1 REMARK REVDAT 3 25-OCT-23 6FEI 1 OBSLTE REVDAT 2 11-AUG-21 6FEI 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV SEQRES HELIX SHEET REVDAT 2 3 1 LINK SITE CRYST1 ATOM REVDAT 1 30-JAN-19 6FEI 0 JRNL AUTH O.DYM,N.AGGARWAL,J.L.SUSSMAN,I.SILMAN JRNL TITL CRYSTAL STRUCTURES OF BACTERAIL PHOSPHOTRIESTERASE VARIANT JRNL TITL 2 WITH HIGH CATALYTIC ACTIVITY TOWARDS ORGANOPHOSPHATE NERVE JRNL TITL 3 AGENTS DEVELOPED BY USE OF STRUCTURE-BASED DESIGN AND JRNL TITL 4 MOLECULAR EVOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1-2575_1692: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 67089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1857 - 4.8973 1.00 2724 143 0.1505 0.1772 REMARK 3 2 4.8973 - 3.8882 0.99 2672 135 0.1328 0.1346 REMARK 3 3 3.8882 - 3.3970 0.99 2650 152 0.1479 0.1916 REMARK 3 4 3.3970 - 3.0866 0.99 2671 140 0.1642 0.1742 REMARK 3 5 3.0866 - 2.8654 1.00 2642 151 0.1640 0.1872 REMARK 3 6 2.8654 - 2.6965 1.00 2687 126 0.1675 0.2153 REMARK 3 7 2.6965 - 2.5615 1.00 2660 140 0.1637 0.1945 REMARK 3 8 2.5615 - 2.4500 1.00 2652 143 0.1568 0.1925 REMARK 3 9 2.4500 - 2.3557 1.00 2650 143 0.1546 0.1859 REMARK 3 10 2.3557 - 2.2744 1.00 2634 171 0.1514 0.1816 REMARK 3 11 2.2744 - 2.2033 1.00 2660 139 0.1444 0.1712 REMARK 3 12 2.2033 - 2.1404 1.00 2679 126 0.1502 0.1928 REMARK 3 13 2.1404 - 2.0840 1.00 2631 125 0.1516 0.2103 REMARK 3 14 2.0840 - 2.0332 1.00 2674 136 0.1563 0.1728 REMARK 3 15 2.0332 - 1.9870 1.00 2635 170 0.1526 0.2005 REMARK 3 16 1.9870 - 1.9447 1.00 2662 138 0.1535 0.2089 REMARK 3 17 1.9447 - 1.9058 1.00 2655 132 0.1673 0.2059 REMARK 3 18 1.9058 - 1.8698 1.00 2631 153 0.1593 0.1987 REMARK 3 19 1.8698 - 1.8364 1.00 2664 131 0.1617 0.2051 REMARK 3 20 1.8364 - 1.8053 1.00 2627 140 0.1578 0.2148 REMARK 3 21 1.8053 - 1.7762 1.00 2701 134 0.1679 0.2074 REMARK 3 22 1.7762 - 1.7488 1.00 2593 151 0.1764 0.2194 REMARK 3 23 1.7488 - 1.7231 1.00 2695 131 0.1920 0.2283 REMARK 3 24 1.7231 - 1.6988 0.97 2543 147 0.2170 0.2691 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5163 REMARK 3 ANGLE : 0.870 7017 REMARK 3 CHIRALITY : 0.051 820 REMARK 3 PLANARITY : 0.005 911 REMARK 3 DIHEDRAL : 7.769 4205 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67051 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 70.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43600 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HZY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 6000 2% MPD 0.1 GLYCINE 0.1M REMARK 280 HEPES PH=7.5, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.62450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 29 REMARK 465 SER A 30 REMARK 465 GLU A 31 REMARK 465 PHE A 32 REMARK 465 ILE A 33 REMARK 465 GLY A 34 REMARK 465 LEU A 362 REMARK 465 ARG A 363 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 81 CD OE1 OE2 REMARK 470 ARG A 89 CZ NH1 NH2 REMARK 470 LYS A 294 NZ REMARK 470 ARG A 337 CZ NH1 NH2 REMARK 470 GLU A 344 CD OE1 OE2 REMARK 470 ARG B 85 NE CZ NH1 NH2 REMARK 470 ARG B 89 CZ NH1 NH2 REMARK 470 ARG B 363 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 169 C FMT A 401 1.66 REMARK 500 NZ LYS B 169 C FMT B 401 1.69 REMARK 500 O HOH B 629 O HOH B 701 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -144.65 -140.57 REMARK 500 THR A 128 -165.79 -107.99 REMARK 500 TRP A 131 -144.81 -105.67 REMARK 500 GLU A 159 -132.95 52.79 REMARK 500 TYR A 309 -156.56 -132.05 REMARK 500 SER B 61 -144.54 -140.55 REMARK 500 THR B 128 -166.70 -106.98 REMARK 500 TRP B 131 -144.90 -104.20 REMARK 500 GLU B 159 -131.47 53.01 REMARK 500 TYR B 309 -155.89 -135.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 202 PHE A 203 148.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 121.1 REMARK 620 3 ASP A 301 OD1 86.4 91.1 REMARK 620 4 FMT A 401 O1 92.6 87.4 177.4 REMARK 620 5 D6K A 404 OAF 120.0 117.3 80.0 102.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 ND1 REMARK 620 2 HIS A 230 NE2 96.7 REMARK 620 3 FMT A 401 O2 106.9 109.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 HIS B 57 NE2 119.4 REMARK 620 3 ASP B 301 OD1 86.3 90.3 REMARK 620 4 FMT B 401 O1 91.3 87.8 175.7 REMARK 620 5 HOH B 629 O 119.3 121.0 99.5 84.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 201 ND1 REMARK 620 2 HIS B 230 NE2 100.0 REMARK 620 3 FMT B 401 O2 102.3 112.0 REMARK 620 4 HOH B 629 O 149.0 94.8 97.0 REMARK 620 5 HOH B 701 O 99.0 121.5 116.9 50.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D6K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FEE RELATED DB: PDB REMARK 900 RELATED ID: 6FEF RELATED DB: PDB DBREF 6FEI A 34 365 UNP P0A434 OPD_BREDI 34 365 DBREF 6FEI B 34 365 UNP P0A434 OPD_BREDI 34 365 SEQADV 6FEI ILE A 29 UNP P0A434 EXPRESSION TAG SEQADV 6FEI SER A 30 UNP P0A434 EXPRESSION TAG SEQADV 6FEI GLU A 31 UNP P0A434 EXPRESSION TAG SEQADV 6FEI PHE A 32 UNP P0A434 EXPRESSION TAG SEQADV 6FEI ILE A 33 UNP P0A434 EXPRESSION TAG SEQADV 6FEI ALA A 77 UNP P0A434 LYS 77 CONFLICT SEQADV 6FEI VAL A 80 UNP P0A434 ALA 80 CONFLICT SEQADV 6FEI ALA A 106 UNP P0A434 ILE 106 CONFLICT SEQADV 6FEI GLU A 132 UNP P0A434 PHE 132 CONFLICT SEQADV 6FEI GLN A 173 UNP P0A434 THR 173 CONFLICT SEQADV 6FEI ARG A 185 UNP P0A434 LYS 185 CONFLICT SEQADV 6FEI PHE A 203 UNP P0A434 ALA 203 CONFLICT SEQADV 6FEI GLY A 254 UNP P0A434 HIS 254 CONFLICT SEQADV 6FEI ASN A 274 UNP P0A434 ILE 274 CONFLICT SEQADV 6FEI SER A 319 UNP P0A434 ARG 319 CONFLICT SEQADV 6FEI ILE B 26 UNP P0A434 EXPRESSION TAG SEQADV 6FEI SER B 27 UNP P0A434 EXPRESSION TAG SEQADV 6FEI GLU B 28 UNP P0A434 EXPRESSION TAG SEQADV 6FEI PHE B 29 UNP P0A434 EXPRESSION TAG SEQADV 6FEI ILE B 30 UNP P0A434 EXPRESSION TAG SEQADV 6FEI ALA B 77 UNP P0A434 LYS 77 CONFLICT SEQADV 6FEI VAL B 80 UNP P0A434 ALA 80 CONFLICT SEQADV 6FEI ALA B 106 UNP P0A434 ILE 106 CONFLICT SEQADV 6FEI GLU B 132 UNP P0A434 PHE 132 CONFLICT SEQADV 6FEI GLN B 173 UNP P0A434 THR 173 CONFLICT SEQADV 6FEI ARG B 185 UNP P0A434 LYS 185 CONFLICT SEQADV 6FEI PHE B 203 UNP P0A434 ALA 203 CONFLICT SEQADV 6FEI GLY B 254 UNP P0A434 HIS 254 CONFLICT SEQADV 6FEI ASN B 274 UNP P0A434 ILE 274 CONFLICT SEQADV 6FEI SER B 319 UNP P0A434 ARG 319 CONFLICT SEQRES 1 A 337 ILE SER GLU PHE ILE GLY ASP ARG ILE ASN THR VAL ARG SEQRES 2 A 337 GLY PRO ILE THR ILE SER GLU ALA GLY PHE THR LEU THR SEQRES 3 A 337 HIS GLU HIS ILE CYS GLY SER SER ALA GLY PHE LEU ARG SEQRES 4 A 337 ALA TRP PRO GLU PHE PHE GLY SER ARG ALA ALA LEU VAL SEQRES 5 A 337 GLU LYS ALA VAL ARG GLY LEU ARG ARG ALA ARG ALA ALA SEQRES 6 A 337 GLY VAL ARG THR ILE VAL ASP VAL SER THR PHE ASP ALA SEQRES 7 A 337 GLY ARG ASP VAL SER LEU LEU ALA GLU VAL SER ARG ALA SEQRES 8 A 337 ALA ASP VAL HIS ILE VAL ALA ALA THR GLY LEU TRP GLU SEQRES 9 A 337 ASP PRO PRO LEU SER MET ARG LEU ARG SER VAL GLU GLU SEQRES 10 A 337 LEU THR GLN PHE PHE LEU ARG GLU ILE GLN TYR GLY ILE SEQRES 11 A 337 GLU ASP THR GLY ILE ARG ALA GLY ILE ILE LYS VAL ALA SEQRES 12 A 337 THR GLN GLY LYS ALA THR PRO PHE GLN GLU LEU VAL LEU SEQRES 13 A 337 ARG ALA ALA ALA ARG ALA SER LEU ALA THR GLY VAL PRO SEQRES 14 A 337 VAL THR THR HIS THR PHE ALA SER GLN ARG ASP GLY GLU SEQRES 15 A 337 GLN GLN ALA ALA ILE PHE GLU SER GLU GLY LEU SER PRO SEQRES 16 A 337 SER ARG VAL CYS ILE GLY HIS SER ASP ASP THR ASP ASP SEQRES 17 A 337 LEU SER TYR LEU THR ALA LEU ALA ALA ARG GLY TYR LEU SEQRES 18 A 337 ILE GLY LEU ASP GLY ILE PRO HIS SER ALA ILE GLY LEU SEQRES 19 A 337 GLU ASP ASN ALA SER ALA SER ALA LEU LEU GLY ASN ARG SEQRES 20 A 337 SER TRP GLN THR ARG ALA LEU LEU ILE LYS ALA LEU ILE SEQRES 21 A 337 ASP GLN GLY TYR MET LYS GLN ILE LEU VAL SER ASN ASP SEQRES 22 A 337 TRP LEU PHE GLY PHE SER SER TYR VAL THR ASN ILE MET SEQRES 23 A 337 ASP VAL MET ASP SER VAL ASN PRO ASP GLY MET ALA PHE SEQRES 24 A 337 ILE PRO LEU ARG VAL ILE PRO PHE LEU ARG GLU LYS GLY SEQRES 25 A 337 VAL PRO GLN GLU THR LEU ALA GLY ILE THR VAL THR ASN SEQRES 26 A 337 PRO ALA ARG PHE LEU SER PRO THR LEU ARG ALA SER SEQRES 1 B 337 ILE SER GLU PHE ILE GLY ASP ARG ILE ASN THR VAL ARG SEQRES 2 B 337 GLY PRO ILE THR ILE SER GLU ALA GLY PHE THR LEU THR SEQRES 3 B 337 HIS GLU HIS ILE CYS GLY SER SER ALA GLY PHE LEU ARG SEQRES 4 B 337 ALA TRP PRO GLU PHE PHE GLY SER ARG ALA ALA LEU VAL SEQRES 5 B 337 GLU LYS ALA VAL ARG GLY LEU ARG ARG ALA ARG ALA ALA SEQRES 6 B 337 GLY VAL ARG THR ILE VAL ASP VAL SER THR PHE ASP ALA SEQRES 7 B 337 GLY ARG ASP VAL SER LEU LEU ALA GLU VAL SER ARG ALA SEQRES 8 B 337 ALA ASP VAL HIS ILE VAL ALA ALA THR GLY LEU TRP GLU SEQRES 9 B 337 ASP PRO PRO LEU SER MET ARG LEU ARG SER VAL GLU GLU SEQRES 10 B 337 LEU THR GLN PHE PHE LEU ARG GLU ILE GLN TYR GLY ILE SEQRES 11 B 337 GLU ASP THR GLY ILE ARG ALA GLY ILE ILE LYS VAL ALA SEQRES 12 B 337 THR GLN GLY LYS ALA THR PRO PHE GLN GLU LEU VAL LEU SEQRES 13 B 337 ARG ALA ALA ALA ARG ALA SER LEU ALA THR GLY VAL PRO SEQRES 14 B 337 VAL THR THR HIS THR PHE ALA SER GLN ARG ASP GLY GLU SEQRES 15 B 337 GLN GLN ALA ALA ILE PHE GLU SER GLU GLY LEU SER PRO SEQRES 16 B 337 SER ARG VAL CYS ILE GLY HIS SER ASP ASP THR ASP ASP SEQRES 17 B 337 LEU SER TYR LEU THR ALA LEU ALA ALA ARG GLY TYR LEU SEQRES 18 B 337 ILE GLY LEU ASP GLY ILE PRO HIS SER ALA ILE GLY LEU SEQRES 19 B 337 GLU ASP ASN ALA SER ALA SER ALA LEU LEU GLY ASN ARG SEQRES 20 B 337 SER TRP GLN THR ARG ALA LEU LEU ILE LYS ALA LEU ILE SEQRES 21 B 337 ASP GLN GLY TYR MET LYS GLN ILE LEU VAL SER ASN ASP SEQRES 22 B 337 TRP LEU PHE GLY PHE SER SER TYR VAL THR ASN ILE MET SEQRES 23 B 337 ASP VAL MET ASP SER VAL ASN PRO ASP GLY MET ALA PHE SEQRES 24 B 337 ILE PRO LEU ARG VAL ILE PRO PHE LEU ARG GLU LYS GLY SEQRES 25 B 337 VAL PRO GLN GLU THR LEU ALA GLY ILE THR VAL THR ASN SEQRES 26 B 337 PRO ALA ARG PHE LEU SER PRO THR LEU ARG ALA SER HET FMT A 401 3 HET ZN A 402 1 HET ZN A 403 1 HET D6K A 404 10 HET FMT B 401 3 HET ZN B 402 1 HET ZN B 403 1 HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION HETNAM D6K (4~{S},6~{R})-2,2,6-TRIMETHYL-1,3-DIOXAN-4-OL FORMUL 3 FMT 2(C H2 O2) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 D6K C7 H14 O3 FORMUL 10 HOH *518(H2 O) HELIX 1 AA1 SER A 47 ALA A 49 5 3 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 LEU A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 PHE A 203 GLN A 206 5 4 HELIX 11 AB2 ARG A 207 GLU A 219 1 13 HELIX 12 AB3 SER A 222 SER A 224 5 3 HELIX 13 AB4 HIS A 230 THR A 234 5 5 HELIX 14 AB5 ASP A 236 ARG A 246 1 11 HELIX 15 AB6 ASN A 265 GLY A 273 1 9 HELIX 16 AB7 SER A 276 GLN A 290 1 15 HELIX 17 AB8 TYR A 292 LYS A 294 5 3 HELIX 18 AB9 ASN A 312 ASN A 321 1 10 HELIX 19 AC1 ASP A 323 MET A 325 5 3 HELIX 20 AC2 ALA A 326 ARG A 331 1 6 HELIX 21 AC3 ARG A 331 LYS A 339 1 9 HELIX 22 AC4 PRO A 342 VAL A 351 1 10 HELIX 23 AC5 VAL A 351 SER A 359 1 9 HELIX 24 AC6 ILE B 26 ILE B 30 5 5 HELIX 25 AC7 ILE B 46 GLY B 50 1 5 HELIX 26 AC8 GLY B 64 TRP B 69 1 6 HELIX 27 AC9 PRO B 70 GLY B 74 5 5 HELIX 28 AD1 SER B 75 ALA B 93 1 19 HELIX 29 AD2 THR B 103 GLY B 107 5 5 HELIX 30 AD3 ASP B 109 ASP B 121 1 13 HELIX 31 AD4 PRO B 135 LEU B 140 1 6 HELIX 32 AD5 SER B 142 TYR B 156 1 15 HELIX 33 AD6 THR B 177 GLY B 195 1 19 HELIX 34 AD7 PHE B 203 GLN B 206 5 4 HELIX 35 AD8 ARG B 207 GLU B 219 1 13 HELIX 36 AD9 SER B 222 SER B 224 5 3 HELIX 37 AE1 HIS B 230 THR B 234 5 5 HELIX 38 AE2 ASP B 236 ARG B 246 1 11 HELIX 39 AE3 ASN B 265 GLY B 273 1 9 HELIX 40 AE4 SER B 276 GLN B 290 1 15 HELIX 41 AE5 TYR B 292 LYS B 294 5 3 HELIX 42 AE6 ASN B 312 ASN B 321 1 10 HELIX 43 AE7 ASP B 323 MET B 325 5 3 HELIX 44 AE8 ALA B 326 LYS B 339 1 14 HELIX 45 AE9 PRO B 342 VAL B 351 1 10 HELIX 46 AF1 VAL B 351 SER B 359 1 9 SHEET 1 AA1 2 ARG A 36 THR A 39 0 SHEET 2 AA1 2 GLY A 42 THR A 45 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 GLY A 129 0 SHEET 2 AA4 6 ILE A 167 ALA A 171 1 O LYS A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA5 2 ARG B 36 THR B 39 0 SHEET 2 AA5 2 GLY B 42 THR B 45 -1 O ILE B 44 N ILE B 37 SHEET 1 AA6 3 THR B 52 GLU B 56 0 SHEET 2 AA6 3 THR B 97 ASP B 100 1 O VAL B 99 N LEU B 53 SHEET 3 AA6 3 HIS B 123 VAL B 125 1 O HIS B 123 N ILE B 98 SHEET 1 AA7 2 CYS B 59 GLY B 60 0 SHEET 2 AA7 2 GLY B 305 PHE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 AA8 6 ALA B 127 GLY B 129 0 SHEET 2 AA8 6 ILE B 167 ALA B 171 1 O LYS B 169 N THR B 128 SHEET 3 AA8 6 VAL B 198 HIS B 201 1 O THR B 199 N ILE B 168 SHEET 4 AA8 6 VAL B 226 ILE B 228 1 O CYS B 227 N VAL B 198 SHEET 5 AA8 6 LEU B 249 LEU B 252 1 O LEU B 249 N ILE B 228 SHEET 6 AA8 6 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252 LINK NE2 HIS A 55 ZN ZN A 402 1555 1555 2.13 LINK NE2 HIS A 57 ZN ZN A 402 1555 1555 2.02 LINK ND1 HIS A 201 ZN ZN A 403 1555 1555 2.09 LINK NE2 HIS A 230 ZN ZN A 403 1555 1555 2.00 LINK OD1 ASP A 301 ZN ZN A 402 1555 1555 2.26 LINK O1 FMT A 401 ZN ZN A 402 1555 1555 2.10 LINK O2 FMT A 401 ZN ZN A 403 1555 1555 1.96 LINK ZN ZN A 402 OAF D6K A 404 1555 1555 1.97 LINK NE2 HIS B 55 ZN ZN B 402 1555 1555 2.16 LINK NE2 HIS B 57 ZN ZN B 402 1555 1555 2.00 LINK ND1 HIS B 201 ZN ZN B 403 1555 1555 2.07 LINK NE2 HIS B 230 ZN ZN B 403 1555 1555 2.03 LINK OD1 ASP B 301 ZN ZN B 402 1555 1555 2.22 LINK O1 FMT B 401 ZN ZN B 402 1555 1555 2.11 LINK O2 FMT B 401 ZN ZN B 403 1555 1555 2.02 LINK ZN ZN B 402 O HOH B 629 1555 1555 2.09 LINK ZN ZN B 403 O HOH B 629 1555 1555 2.53 LINK ZN ZN B 403 O HOH B 701 1555 1555 2.15 SITE 1 AC1 9 HIS A 55 HIS A 57 VAL A 101 LYS A 169 SITE 2 AC1 9 HIS A 201 HIS A 230 ZN A 402 ZN A 403 SITE 3 AC1 9 D6K A 404 SITE 1 AC2 5 HIS A 55 HIS A 57 ASP A 301 FMT A 401 SITE 2 AC2 5 D6K A 404 SITE 1 AC3 4 HIS A 201 HIS A 230 FMT A 401 D6K A 404 SITE 1 AC4 11 HIS A 55 HIS A 57 TRP A 131 HIS A 230 SITE 2 AC4 11 HIS A 257 LEU A 271 ASP A 301 PHE A 306 SITE 3 AC4 11 FMT A 401 ZN A 402 ZN A 403 SITE 1 AC5 9 HIS B 55 HIS B 57 VAL B 101 LYS B 169 SITE 2 AC5 9 HIS B 201 HIS B 230 ZN B 402 ZN B 403 SITE 3 AC5 9 HOH B 629 SITE 1 AC6 5 HIS B 55 HIS B 57 ASP B 301 FMT B 401 SITE 2 AC6 5 HOH B 629 SITE 1 AC7 5 HIS B 201 HIS B 230 FMT B 401 HOH B 629 SITE 2 AC7 5 HOH B 701 CRYST1 54.230 81.249 70.666 90.00 94.80 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018440 0.000000 0.001549 0.00000 SCALE2 0.000000 0.012308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014201 0.00000