HEADER SUGAR BINDING PROTEIN 09-JAN-18 6FFQ TITLE SOLUTION NMR STRUCTURE OF CBM64 FROM S.THERMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE FAMILY 5 CELLULASE CBM64; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: C-TERMINAL 86-RESIDUE MODULE OF CBM64 FROM COMPND 6 S.THERMOPHILA, UNP RESIDUES 456-541 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPIROCHAETA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 154; SOURCE 4 GENE: STHERM_C20620; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CBM64, SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.A.HEIKKINEN,H.IWAI REVDAT 5 14-JUN-23 6FFQ 1 REMARK REVDAT 4 17-MAR-21 6FFQ 1 JRNL REVDAT 3 10-FEB-21 6FFQ 1 JRNL REMARK REVDAT 2 08-MAY-19 6FFQ 1 REMARK REVDAT 1 30-JAN-19 6FFQ 0 JRNL AUTH H.A.HEIKKINEN,S.M.BACKLUND,H.IWAI JRNL TITL NMR STRUCTURE DETERMINATIONS OF SMALL PROTEINS USING ONLY JRNL TITL 2 ONE FRACTIONALLY 20% 13 C- AND UNIFORMLY 100% 15 N-LABELED JRNL TITL 3 SAMPLE. JRNL REF MOLECULES V. 26 2021 JRNL REFN ESSN 1420-3049 JRNL PMID 33535444 JRNL DOI 10.3390/MOLECULES26030747 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 14 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008246. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 6.4 MG/ML [U-13C; U-15N] REMARK 210 CBM64_100, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D 1H-15N TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CCPNMR ANALYSIS 2.4.2, REMARK 210 CYANA 3.97, TALOS N REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 4 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 7 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 490 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 8 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 9 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 10 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 11 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 13 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 15 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 17 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 18 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 20 ARG A 490 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 459 105.26 -58.61 REMARK 500 1 ASP A 487 44.67 -70.78 REMARK 500 1 TRP A 495 -41.50 -161.13 REMARK 500 1 TYR A 507 16.82 -142.31 REMARK 500 2 ARG A 490 50.91 -90.93 REMARK 500 2 TRP A 495 -41.09 -154.49 REMARK 500 3 GLU A 458 30.87 -85.65 REMARK 500 3 TRP A 495 -43.86 -158.68 REMARK 500 4 ARG A 490 58.64 -90.18 REMARK 500 4 TRP A 495 -42.68 -161.45 REMARK 500 5 TRP A 495 -37.29 -160.99 REMARK 500 6 ARG A 490 56.24 -91.12 REMARK 500 6 TRP A 495 -37.41 -159.36 REMARK 500 7 TRP A 495 -35.99 -165.24 REMARK 500 8 TRP A 495 -44.51 -164.77 REMARK 500 9 TRP A 495 -40.41 -156.88 REMARK 500 10 TRP A 495 -35.63 -160.86 REMARK 500 11 ASP A 487 37.19 -70.55 REMARK 500 11 TRP A 495 -37.19 -168.22 REMARK 500 11 TYR A 507 20.88 -142.81 REMARK 500 12 ARG A 490 46.31 -90.51 REMARK 500 12 TRP A 495 -41.52 -157.86 REMARK 500 13 ASP A 487 36.14 -68.83 REMARK 500 13 TRP A 495 -39.21 -160.89 REMARK 500 14 ARG A 490 50.03 -94.92 REMARK 500 14 TRP A 495 -44.27 -164.71 REMARK 500 15 ASP A 487 42.53 -71.20 REMARK 500 15 TRP A 495 -41.32 -157.33 REMARK 500 15 SER A 534 0.52 -68.47 REMARK 500 16 ASP A 487 46.58 -73.16 REMARK 500 16 TRP A 495 -44.16 -163.94 REMARK 500 17 GLU A 458 44.69 -83.51 REMARK 500 17 TRP A 495 -37.21 -160.29 REMARK 500 17 TYR A 507 20.31 -142.51 REMARK 500 18 TRP A 495 -31.29 -162.65 REMARK 500 18 TYR A 507 18.96 -142.49 REMARK 500 19 TRP A 495 -46.12 -156.46 REMARK 500 20 TRP A 495 -44.37 -154.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 510 TRP A 511 9 148.17 REMARK 500 VAL A 510 TRP A 511 10 144.40 REMARK 500 VAL A 510 TRP A 511 14 149.48 REMARK 500 TYR A 524 TRP A 525 19 149.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 459 0.07 SIDE CHAIN REMARK 500 2 TYR A 475 0.07 SIDE CHAIN REMARK 500 2 ARG A 490 0.13 SIDE CHAIN REMARK 500 2 TYR A 524 0.07 SIDE CHAIN REMARK 500 3 TYR A 475 0.08 SIDE CHAIN REMARK 500 4 TYR A 475 0.10 SIDE CHAIN REMARK 500 6 TYR A 468 0.08 SIDE CHAIN REMARK 500 6 TYR A 475 0.11 SIDE CHAIN REMARK 500 9 TYR A 468 0.09 SIDE CHAIN REMARK 500 10 TYR A 475 0.10 SIDE CHAIN REMARK 500 12 TYR A 468 0.07 SIDE CHAIN REMARK 500 12 TYR A 475 0.08 SIDE CHAIN REMARK 500 13 TYR A 475 0.12 SIDE CHAIN REMARK 500 14 TYR A 468 0.08 SIDE CHAIN REMARK 500 14 TYR A 475 0.06 SIDE CHAIN REMARK 500 15 TYR A 468 0.07 SIDE CHAIN REMARK 500 18 TYR A 468 0.08 SIDE CHAIN REMARK 500 20 TYR A 475 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34227 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF CBM64 FROM S.THERMOPHILA DBREF 6FFQ A 456 541 UNP E0RQU0 E0RQU0_SPITD 456 541 SEQRES 1 A 86 SER GLY GLU TYR THR GLU ILE ALA LEU PRO PHE SER TYR SEQRES 2 A 86 ASP GLY ALA GLY GLU TYR TYR TRP LYS THR ASP GLN PHE SEQRES 3 A 86 SER THR ASP PRO ASN ASP TRP SER ARG TYR VAL ASN SER SEQRES 4 A 86 TRP ASN LEU ASP LEU LEU GLU ILE ASN GLY THR ASP TYR SEQRES 5 A 86 THR ASN VAL TRP VAL ALA GLN HIS GLN ILE PRO ALA ALA SEQRES 6 A 86 SER ASP GLY TYR TRP TYR ILE HIS TYR LYS SER GLY VAL SEQRES 7 A 86 SER TRP GLY HIS VAL GLU ILE LYS HELIX 1 AA1 HIS A 515 ILE A 517 5 3 SHEET 1 AA1 5 THR A 460 GLU A 461 0 SHEET 2 AA1 5 TYR A 474 THR A 478 1 O LYS A 477 N THR A 460 SHEET 3 AA1 5 TRP A 525 TYR A 529 -1 O ILE A 527 N TRP A 476 SHEET 4 AA1 5 LEU A 500 ILE A 502 -1 N GLU A 501 O HIS A 528 SHEET 5 AA1 5 THR A 505 ASP A 506 -1 O THR A 505 N ILE A 502 SHEET 1 AA2 4 PHE A 466 ASP A 469 0 SHEET 2 AA2 4 HIS A 537 ILE A 540 -1 O ILE A 540 N PHE A 466 SHEET 3 AA2 4 TYR A 491 ASN A 493 -1 N ASN A 493 O GLU A 539 SHEET 4 AA2 4 VAL A 512 ALA A 513 -1 O VAL A 512 N VAL A 492 CISPEP 1 LEU A 464 PRO A 465 1 -13.98 CISPEP 2 LEU A 464 PRO A 465 2 -14.31 CISPEP 3 LEU A 464 PRO A 465 3 -6.15 CISPEP 4 LEU A 464 PRO A 465 4 -11.06 CISPEP 5 LEU A 464 PRO A 465 5 -11.00 CISPEP 6 LEU A 464 PRO A 465 6 -6.84 CISPEP 7 LEU A 464 PRO A 465 7 -12.22 CISPEP 8 LEU A 464 PRO A 465 8 1.57 CISPEP 9 LEU A 464 PRO A 465 9 -4.88 CISPEP 10 LEU A 464 PRO A 465 10 -8.66 CISPEP 11 LEU A 464 PRO A 465 11 -10.66 CISPEP 12 LEU A 464 PRO A 465 12 -2.35 CISPEP 13 LEU A 464 PRO A 465 13 -1.81 CISPEP 14 LEU A 464 PRO A 465 14 -2.46 CISPEP 15 LEU A 464 PRO A 465 15 -15.01 CISPEP 16 LEU A 464 PRO A 465 16 -11.03 CISPEP 17 LEU A 464 PRO A 465 17 -5.79 CISPEP 18 LEU A 464 PRO A 465 18 1.47 CISPEP 19 LEU A 464 PRO A 465 19 -4.61 CISPEP 20 LEU A 464 PRO A 465 20 -4.56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1