HEADER STRUCTURAL PROTEIN 10-JAN-18 6FGD TITLE CRYSTAL STRUCTURE OF GEPHYRIN E DOMAIN IN COMPLEX WITH ARTEMETHER CAVEAT 6FGD MPD A 830 HAS WRONG CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEPHYRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE GLYCINE RECEPTOR-TUBULIN LINKER PROTEIN; COMPND 5 EC: 2.7.7.75,2.10.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GPHN, GPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIMALARIAL COMPOUND, SCAFFOLDING PROTEIN, MOONLIGHTING PROTEIN, KEYWDS 2 INHIBITORY NEUROTRANSMISSION, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.B.KASARAGOD,H.SCHINDELIN REVDAT 4 17-JAN-24 6FGD 1 REMARK LINK REVDAT 3 06-MAR-19 6FGD 1 JRNL REVDAT 2 13-FEB-19 6FGD 1 JRNL REVDAT 1 16-JAN-19 6FGD 0 JRNL AUTH V.B.KASARAGOD,T.J.HAUSRAT,N.SCHAEFER,M.KUHN,N.R.CHRISTENSEN, JRNL AUTH 2 I.TESSMER,H.M.MARIC,K.L.MADSEN,C.SOTRIFFER,C.VILLMANN, JRNL AUTH 3 M.KNEUSSEL,H.SCHINDELIN JRNL TITL ELUCIDATING THE MOLECULAR BASIS FOR INHIBITORY JRNL TITL 2 NEUROTRANSMISSION REGULATION BY ARTEMISININS. JRNL REF NEURON V. 101 673 2019 JRNL REFN ISSN 1097-4199 JRNL PMID 30704910 JRNL DOI 10.1016/J.NEURON.2019.01.001 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2567: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 77357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 3752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5944 - 4.4984 0.99 2901 140 0.1897 0.2058 REMARK 3 2 4.4984 - 3.5710 1.00 2832 125 0.1288 0.1526 REMARK 3 3 3.5710 - 3.1198 0.99 2750 149 0.1329 0.1663 REMARK 3 4 3.1198 - 2.8346 0.99 2766 127 0.1307 0.1553 REMARK 3 5 2.8346 - 2.6315 1.00 2731 149 0.1249 0.1565 REMARK 3 6 2.6315 - 2.4763 1.00 2773 128 0.1285 0.1453 REMARK 3 7 2.4763 - 2.3523 1.00 2774 116 0.1227 0.1460 REMARK 3 8 2.3523 - 2.2499 1.00 2762 148 0.1226 0.1563 REMARK 3 9 2.2499 - 2.1633 0.99 2660 159 0.1223 0.1739 REMARK 3 10 2.1633 - 2.0887 1.00 2728 150 0.1239 0.1549 REMARK 3 11 2.0887 - 2.0234 1.00 2712 148 0.1260 0.1397 REMARK 3 12 2.0234 - 1.9655 1.00 2746 134 0.1318 0.1699 REMARK 3 13 1.9655 - 1.9138 1.00 2739 117 0.1438 0.1788 REMARK 3 14 1.9138 - 1.8671 0.99 2724 138 0.1523 0.1986 REMARK 3 15 1.8671 - 1.8246 0.99 2705 145 0.1515 0.1694 REMARK 3 16 1.8246 - 1.7858 1.00 2714 144 0.1573 0.2018 REMARK 3 17 1.7858 - 1.7501 1.00 2695 143 0.1607 0.1822 REMARK 3 18 1.7501 - 1.7171 0.99 2693 138 0.1802 0.2439 REMARK 3 19 1.7171 - 1.6864 0.99 2664 154 0.1987 0.2539 REMARK 3 20 1.6864 - 1.6578 0.99 2686 145 0.2066 0.2439 REMARK 3 21 1.6578 - 1.6311 0.99 2704 136 0.2153 0.2790 REMARK 3 22 1.6311 - 1.6060 0.99 2650 155 0.2339 0.2462 REMARK 3 23 1.6060 - 1.5823 0.99 2754 123 0.2366 0.2536 REMARK 3 24 1.5823 - 1.5601 0.99 2704 115 0.2413 0.2741 REMARK 3 25 1.5601 - 1.5390 0.99 2677 129 0.2387 0.2480 REMARK 3 26 1.5390 - 1.5190 0.99 2660 153 0.2565 0.2652 REMARK 3 27 1.5190 - 1.5000 0.99 2701 144 0.2705 0.3294 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3588 REMARK 3 ANGLE : 1.077 4912 REMARK 3 CHIRALITY : 0.062 567 REMARK 3 PLANARITY : 0.007 653 REMARK 3 DIHEDRAL : 15.755 2262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77361 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.28400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ERR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE 20-36% MPD, PH REMARK 280 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.57600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.72750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.98250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.57600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.72750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.98250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.57600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.72750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.98250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.57600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.72750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.98250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 111.96500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C ACT A 815 LIES ON A SPECIAL POSITION. REMARK 375 CH3 ACT A 815 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1050 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1192 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1248 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1322 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1324 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 318 REMARK 465 GLY A 693 REMARK 465 ASN A 694 REMARK 465 GLN A 695 REMARK 465 MET A 696 REMARK 465 SER A 697 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PRO A 625 N CA C O CB CG CD REMARK 480 SER A 691 N CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 436 O ASP A 438 1.60 REMARK 500 O HOH A 1128 O HOH A 1240 1.90 REMARK 500 O HOH A 1245 O HOH A 1288 1.92 REMARK 500 O HOH A 1297 O HOH A 1312 2.00 REMARK 500 O HOH A 1126 O HOH A 1250 2.01 REMARK 500 O HOH A 1112 O HOH A 1153 2.01 REMARK 500 O HOH A 921 O HOH A 1153 2.02 REMARK 500 O HOH A 1268 O HOH A 1287 2.03 REMARK 500 O HOH A 1174 O HOH A 1263 2.05 REMARK 500 OXT ACT A 827 O HOH A 901 2.16 REMARK 500 O HOH A 901 O HOH A 974 2.18 REMARK 500 O HOH A 1068 O HOH A 1196 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1060 O HOH A 1062 3556 1.94 REMARK 500 O HOH A 1218 O HOH A 1218 2555 2.04 REMARK 500 O HOH A 1225 O HOH A 1291 2565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1324 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 580 OD1 REMARK 620 2 ASP A 580 OD2 46.7 REMARK 620 3 ADP A 829 O1B 91.5 79.3 REMARK 620 4 ADP A 829 O1A 132.9 155.7 76.4 REMARK 620 5 HOH A 942 O 84.2 82.4 158.3 121.5 REMARK 620 6 HOH A1023 O 75.8 120.8 121.1 72.6 78.5 REMARK 620 7 HOH A1144 O 145.2 100.6 93.3 81.6 78.8 128.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 828 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 630 OG REMARK 620 2 HOH A1140 O 99.3 REMARK 620 3 HOH A1191 O 106.8 145.3 REMARK 620 4 HOH A1310 O 144.3 84.7 60.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 829 O2A REMARK 620 2 HOH A 966 O 112.0 REMARK 620 3 HOH A1012 O 168.7 79.2 REMARK 620 4 HOH A1023 O 81.8 67.6 103.7 REMARK 620 5 HOH A1044 O 84.0 145.9 86.2 146.3 REMARK 620 6 HOH A1076 O 93.7 129.2 78.7 74.1 76.5 REMARK 620 7 HOH A1105 O 92.0 73.4 91.0 134.4 76.3 151.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 812 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 813 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 814 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 815 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 816 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 817 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 818 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 819 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 820 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 821 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 822 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 823 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 824 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 825 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 826 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 827 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 828 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 829 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 830 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D8Z A 831 DBREF 6FGD A 318 736 UNP Q03555 GEPH_RAT 344 762 SEQRES 1 A 419 MET SER PRO PHE PRO LEU THR SER MET ASP LYS ALA PHE SEQRES 2 A 419 ILE THR VAL LEU GLU MET THR PRO VAL LEU GLY THR GLU SEQRES 3 A 419 ILE ILE ASN TYR ARG ASP GLY MET GLY ARG VAL LEU ALA SEQRES 4 A 419 GLN ASP VAL TYR ALA LYS ASP ASN LEU PRO PRO PHE PRO SEQRES 5 A 419 ALA SER VAL LYS ASP GLY TYR ALA VAL ARG ALA ALA ASP SEQRES 6 A 419 GLY PRO GLY ASP ARG PHE ILE ILE GLY GLU SER GLN ALA SEQRES 7 A 419 GLY GLU GLN PRO THR GLN THR VAL MET PRO GLY GLN VAL SEQRES 8 A 419 MET ARG VAL THR THR GLY ALA PRO ILE PRO CYS GLY ALA SEQRES 9 A 419 ASP ALA VAL VAL GLN VAL GLU ASP THR GLU LEU ILE ARG SEQRES 10 A 419 GLU SER ASP ASP GLY THR GLU GLU LEU GLU VAL ARG ILE SEQRES 11 A 419 LEU VAL GLN ALA ARG PRO GLY GLN ASP ILE ARG PRO ILE SEQRES 12 A 419 GLY HIS ASP ILE LYS ARG GLY GLU CYS VAL LEU ALA LYS SEQRES 13 A 419 GLY THR HIS MET GLY PRO SER GLU ILE GLY LEU LEU ALA SEQRES 14 A 419 THR VAL GLY VAL THR GLU VAL GLU VAL ASN LYS PHE PRO SEQRES 15 A 419 VAL VAL ALA VAL MET SER THR GLY ASN GLU LEU LEU ASN SEQRES 16 A 419 PRO GLU ASP ASP LEU LEU PRO GLY LYS ILE ARG ASP SER SEQRES 17 A 419 ASN ARG SER THR LEU LEU ALA THR ILE GLN GLU HIS GLY SEQRES 18 A 419 TYR PRO THR ILE ASN LEU GLY ILE VAL GLY ASP ASN PRO SEQRES 19 A 419 ASP ASP LEU LEU ASN ALA LEU ASN GLU GLY ILE SER ARG SEQRES 20 A 419 ALA ASP VAL ILE ILE THR SER GLY GLY VAL SER MET GLY SEQRES 21 A 419 GLU LYS ASP TYR LEU LYS GLN VAL LEU ASP ILE ASP LEU SEQRES 22 A 419 HIS ALA GLN ILE HIS PHE GLY ARG VAL PHE MET LYS PRO SEQRES 23 A 419 GLY LEU PRO THR THR PHE ALA THR LEU ASP ILE ASP GLY SEQRES 24 A 419 VAL ARG LYS ILE ILE PHE ALA LEU PRO GLY ASN PRO VAL SEQRES 25 A 419 SER ALA VAL VAL THR CYS ASN LEU PHE VAL VAL PRO ALA SEQRES 26 A 419 LEU ARG LYS MET GLN GLY ILE LEU ASP PRO ARG PRO THR SEQRES 27 A 419 ILE ILE LYS ALA ARG LEU SER CYS ASP VAL LYS LEU ASP SEQRES 28 A 419 PRO ARG PRO GLU TYR HIS ARG CYS ILE LEU THR TRP HIS SEQRES 29 A 419 HIS GLN GLU PRO LEU PRO TRP ALA GLN SER THR GLY ASN SEQRES 30 A 419 GLN MET SER SER ARG LEU MET SER MET ARG SER ALA ASN SEQRES 31 A 419 GLY LEU LEU MET LEU PRO PRO LYS THR GLU GLN TYR VAL SEQRES 32 A 419 GLU LEU HIS LYS GLY GLU VAL VAL ASP VAL MET VAL ILE SEQRES 33 A 419 GLY ARG LEU HET CA A 801 1 HET CA A 802 1 HET PO4 A 803 5 HET ACT A 804 7 HET ACT A 805 7 HET ACT A 806 14 HET ACT A 807 7 HET ACT A 808 7 HET ACT A 809 7 HET ACT A 810 14 HET ACT A 811 7 HET ACT A 812 7 HET ACT A 813 7 HET ACT A 814 14 HET ACT A 815 7 HET ACT A 816 7 HET ACT A 817 7 HET ACT A 818 7 HET ACT A 819 7 HET ACT A 820 7 HET ACT A 821 7 HET ACT A 822 7 HET ACT A 823 7 HET ACT A 824 7 HET ACT A 825 7 HET ACT A 826 7 HET ACT A 827 7 HET NA A 828 1 HET ADP A 829 39 HET MPD A 830 22 HET D8Z A 831 47 HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM D8Z ARTEMETHER FORMUL 2 CA 2(CA 2+) FORMUL 4 PO4 O4 P 3- FORMUL 5 ACT 24(C2 H3 O2 1-) FORMUL 29 NA NA 1+ FORMUL 30 ADP C10 H15 N5 O10 P2 FORMUL 31 MPD C6 H14 O2 FORMUL 32 D8Z C16 H26 O5 FORMUL 33 HOH *424(H2 O) HELIX 1 AA1 SER A 325 THR A 337 1 13 HELIX 2 AA2 ARG A 348 GLY A 350 5 3 HELIX 3 AA3 ARG A 379 GLY A 383 5 5 HELIX 4 AA4 GLY A 478 GLY A 489 1 12 HELIX 5 AA5 SER A 525 HIS A 537 1 13 HELIX 6 AA6 ASN A 550 ALA A 565 1 16 HELIX 7 AA7 TYR A 581 ASP A 589 1 9 HELIX 8 AA8 ASN A 627 GLN A 647 1 21 HELIX 9 AA9 LEU A 700 ARG A 704 5 5 SHEET 1 AA1 2 LEU A 323 THR A 324 0 SHEET 2 AA1 2 ARG A 598 VAL A 599 1 O ARG A 598 N THR A 324 SHEET 1 AA2 2 THR A 342 ASN A 346 0 SHEET 2 AA2 2 GLU A 492 ASN A 496 -1 O VAL A 493 N ILE A 345 SHEET 1 AA3 2 VAL A 359 TYR A 360 0 SHEET 2 AA3 2 CYS A 469 LEU A 471 -1 O LEU A 471 N VAL A 359 SHEET 1 AA4 2 ALA A 370 SER A 371 0 SHEET 2 AA4 2 ILE A 457 ARG A 458 -1 O ARG A 458 N ALA A 370 SHEET 1 AA5 6 ALA A 423 GLN A 426 0 SHEET 2 AA5 6 GLY A 375 VAL A 378 -1 N VAL A 378 O ALA A 423 SHEET 3 AA5 6 GLN A 407 VAL A 411 -1 O MET A 409 N ALA A 377 SHEET 4 AA5 6 GLY A 385 SER A 393 1 N SER A 393 O ARG A 410 SHEET 5 AA5 6 GLU A 442 ILE A 447 -1 O ILE A 447 N GLY A 385 SHEET 6 AA5 6 THR A 430 GLU A 435 -1 N GLU A 431 O ARG A 446 SHEET 1 AA6 6 THR A 541 VAL A 547 0 SHEET 2 AA6 6 VAL A 501 THR A 506 1 N VAL A 503 O LEU A 544 SHEET 3 AA6 6 VAL A 567 SER A 571 1 O ILE A 569 N ALA A 502 SHEET 4 AA6 6 VAL A 617 LEU A 624 1 O LEU A 624 N THR A 570 SHEET 5 AA6 6 THR A 608 ILE A 614 -1 N LEU A 612 O LYS A 619 SHEET 6 AA6 6 GLN A 593 PHE A 596 -1 N GLN A 593 O THR A 611 SHEET 1 AA7 2 LEU A 510 LEU A 511 0 SHEET 2 AA7 2 ILE A 522 ARG A 523 1 O ILE A 522 N LEU A 511 SHEET 1 AA8 6 ILE A 656 LEU A 661 0 SHEET 2 AA8 6 TRP A 688 SER A 691 1 O ALA A 689 N ARG A 660 SHEET 3 AA8 6 GLU A 672 THR A 679 -1 N ILE A 677 O GLN A 690 SHEET 4 AA8 6 GLY A 708 LEU A 712 -1 O LEU A 712 N GLU A 672 SHEET 5 AA8 6 VAL A 727 VAL A 732 -1 O MET A 731 N LEU A 709 SHEET 6 AA8 6 ILE A 656 LEU A 661 -1 N ALA A 659 O VAL A 728 SHEET 1 AA9 2 VAL A 665 LYS A 666 0 SHEET 2 AA9 2 GLU A 721 LEU A 722 -1 O LEU A 722 N VAL A 665 LINK OD1 ASP A 580 CA CA A 802 1555 1555 2.83 LINK OD2 ASP A 580 CA CA A 802 1555 1555 2.66 LINK OG SER A 630 NA NA A 828 1555 1555 2.89 LINK CA CA A 801 O2A ADP A 829 1555 1555 2.29 LINK CA CA A 801 O HOH A 966 1555 1555 2.44 LINK CA CA A 801 O HOH A1012 1555 1555 2.34 LINK CA CA A 801 O HOH A1023 1555 1555 2.38 LINK CA CA A 801 O HOH A1044 1555 1555 2.43 LINK CA CA A 801 O HOH A1076 1555 1555 2.39 LINK CA CA A 801 O HOH A1105 1555 1555 2.45 LINK CA CA A 802 O1B ADP A 829 1555 1555 2.40 LINK CA CA A 802 O1A ADP A 829 1555 1555 2.21 LINK CA CA A 802 O HOH A 942 1555 3556 2.42 LINK CA CA A 802 O HOH A1023 1555 1555 2.42 LINK CA CA A 802 O HOH A1144 1555 1555 2.27 LINK NA NA A 828 O HOH A1140 1555 1555 2.99 LINK NA NA A 828 O HOH A1191 1555 1555 2.80 LINK NA NA A 828 O HOH A1310 1555 1555 2.51 CISPEP 1 SER A 319 PRO A 320 0 1.53 CISPEP 2 LEU A 365 PRO A 366 0 -11.51 CISPEP 3 LYS A 602 PRO A 603 0 -10.17 SITE 1 AC1 7 ADP A 829 HOH A 966 HOH A1012 HOH A1023 SITE 2 AC1 7 HOH A1044 HOH A1076 HOH A1105 SITE 1 AC2 5 ASP A 580 ADP A 829 HOH A 942 HOH A1023 SITE 2 AC2 5 HOH A1144 SITE 1 AC3 5 VAL A 500 ARG A 564 ALA A 565 ASP A 566 SITE 2 AC3 5 LYS A 619 SITE 1 AC4 2 CYS A 469 VAL A 470 SITE 1 AC5 3 ASP A 651 ARG A 653 ACT A 826 SITE 1 AC6 4 HIS A 476 MET A 477 SER A 705 HOH A1120 SITE 1 AC7 2 VAL A 339 ARG A 618 SITE 1 AC8 2 MPD A 830 HOH A 922 SITE 1 AC9 3 LEU A 323 SER A 325 PHE A 600 SITE 1 AD1 3 ARG A 348 GLN A 535 HOH A1161 SITE 1 AD2 5 GLU A 343 ARG A 353 LYS A 497 PHE A 498 SITE 2 AD2 5 HOH A1194 SITE 1 AD3 2 THR A 342 SER A 563 SITE 1 AD4 7 GLU A 335 MET A 336 THR A 337 PRO A 338 SITE 2 AD4 7 ARG A 618 HOH A 907 HOH A1220 SITE 1 AD5 1 GLU A 514 SITE 1 AD6 4 ASP A 613 ILE A 614 ASP A 615 GLY A 616 SITE 1 AD7 2 ALA A 356 HOH A 909 SITE 1 AD8 2 ASP A 613 GLY A 616 SITE 1 AD9 3 ARG A 660 LYS A 724 GLY A 725 SITE 1 AE1 5 GLU A 392 GLU A 397 PRO A 399 THR A 400 SITE 2 AE1 5 GLN A 401 SITE 1 AE2 4 GLU A 335 ASP A 386 PHE A 388 GLY A 406 SITE 1 AE3 3 PRO A 418 ALA A 421 HOH A1189 SITE 1 AE4 4 LEU A 544 GLU A 560 HOH A 905 HOH A1075 SITE 1 AE5 6 ARG A 434 GLU A 444 ASP A 651 PRO A 652 SITE 2 AE5 6 ARG A 653 HOH A 921 SITE 1 AE6 4 LYS A 658 VAL A 727 VAL A 728 ASP A 729 SITE 1 AE7 5 HIS A 476 ARG A 644 ACT A 805 HOH A1134 SITE 2 AE7 5 HOH A1199 SITE 1 AE8 6 LYS A 373 GLN A 426 ASP A 456 HOH A 901 SITE 2 AE8 6 HOH A 908 HOH A 974 SITE 1 AE9 5 PRO A 625 SER A 630 HOH A1140 HOH A1191 SITE 2 AE9 5 HOH A1310 SITE 1 AF1 28 GLY A 414 SER A 505 GLU A 509 LEU A 510 SITE 2 AF1 28 ILE A 522 ASP A 524 SER A 525 ASN A 526 SITE 3 AF1 28 GLY A 572 GLY A 573 VAL A 574 SER A 575 SITE 4 AF1 28 ASP A 580 PRO A 625 GLY A 626 ASN A 627 SITE 5 AF1 28 PRO A 628 CA A 801 CA A 802 HOH A 976 SITE 6 AF1 28 HOH A1023 HOH A1038 HOH A1066 HOH A1086 SITE 7 AF1 28 HOH A1140 HOH A1144 HOH A1156 HOH A1167 SITE 1 AF2 7 SER A 480 LEU A 484 PRO A 628 ARG A 675 SITE 2 AF2 7 ACT A 808 HOH A 973 HOH A 998 SITE 1 AF3 8 MET A 326 ASP A 327 PHE A 330 LEU A 637 SITE 2 AF3 8 ARG A 653 ILE A 656 MET A 711 MET A 731 CRYST1 87.152 99.455 111.965 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008931 0.00000