HEADER OXIDOREDUCTASE 15-JAN-18 6FHO TITLE CRYSTAL STRUCTURE OF PQSL, A PROBABLE FAD-DEPENDENT MONOOXYGENASE FROM TITLE 2 PSEUDOMONAS AERUGINOSA - NEW REFINEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE FAD-DEPENDENT MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: PQSL, PA4190; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS OXIDOREDUCTASE, PQSL, FLAVOPROTEIN MONOOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR B.D.BELVISO,S.L.DREES,S.ERNST,N.JAGMANN,U.HENNECKE,S.FETZNER REVDAT 4 08-MAY-24 6FHO 1 REMARK REVDAT 3 27-JUN-18 6FHO 1 JRNL REVDAT 2 09-MAY-18 6FHO 1 JRNL REVDAT 1 25-APR-18 6FHO 0 JRNL AUTH S.L.DREES,S.ERNST,B.D.BELVISO,N.JAGMANN,U.HENNECKE,S.FETZNER JRNL TITL PQSL USES REDUCED FLAVIN TO PRODUCE JRNL TITL 2 2-HYDROXYLAMINOBENZOYLACETATE, A PREFERRED PQSBC SUBSTRATE JRNL TITL 3 IN ALKYL QUINOLONE BIOSYNTHESIS INPSEUDOMONAS AERUGINOSA. JRNL REF J. BIOL. CHEM. V. 293 9345 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29669807 JRNL DOI 10.1074/JBC.RA117.000789 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 37305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2562 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2982 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2865 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4050 ; 2.035 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6515 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 6.648 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;31.015 ;22.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 483 ;14.172 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;20.627 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3425 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 729 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1477 ; 2.531 ; 2.515 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1476 ; 2.526 ; 2.514 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1846 ; 3.486 ; 3.761 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1847 ; 3.487 ; 3.763 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1505 ; 3.420 ; 2.959 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1506 ; 3.419 ; 2.959 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2202 ; 5.275 ; 4.282 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3453 ; 6.827 ;21.135 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3419 ; 6.835 ;21.071 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 28.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31% PEG1500, 0.1M HEPES, PH 7.5. REMARK 280 CRYSTALS WERE CRYOPROTECTED WITH 10% PEG400 IN A SOLUTION REMARK 280 CONTAINING 35% PEG1500, 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.53850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.31400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.62850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.31400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.53850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.62850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 371 REMARK 465 LEU A 372 REMARK 465 GLN A 373 REMARK 465 GLY A 374 REMARK 465 SER A 375 REMARK 465 SER A 376 REMARK 465 ARG A 377 REMARK 465 THR A 378 REMARK 465 PRO A 379 REMARK 465 GLU A 380 REMARK 465 ALA A 381 REMARK 465 LEU A 382 REMARK 465 GLY A 383 REMARK 465 GLY A 384 REMARK 465 GLU A 385 REMARK 465 ARG A 386 REMARK 465 SER A 387 REMARK 465 TYR A 388 REMARK 465 GLN A 389 REMARK 465 PRO A 390 REMARK 465 VAL A 391 REMARK 465 ARG A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 ALA A 395 REMARK 465 PRO A 396 REMARK 465 LEU A 397 REMARK 465 GLY A 398 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 240 CD NE CZ NH1 NH2 REMARK 470 ARG A 361 NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 137 CG CD OE1 OE2 REMARK 480 GLU A 177 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 50 CD LYS A 50 CE 0.169 REMARK 500 ARG A 129 CB ARG A 129 CG -0.217 REMARK 500 GLU A 137 CB GLU A 137 CG 0.135 REMARK 500 GLU A 177 CG GLU A 177 CD -0.365 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LYS A 50 CD - CE - NZ ANGL. DEV. = 18.9 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLU A 137 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 ASP A 161 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ILE A 163 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 GLU A 177 CB - CG - CD ANGL. DEV. = 41.9 DEGREES REMARK 500 GLU A 177 CG - CD - OE1 ANGL. DEV. = -15.3 DEGREES REMARK 500 GLU A 177 CG - CD - OE2 ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 165 113.99 -32.66 REMARK 500 ASP A 219 29.23 -146.21 REMARK 500 ASP A 285 -131.68 55.01 REMARK 500 ASN A 286 31.70 -98.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X3N RELATED DB: PDB REMARK 900 THE STRUCTURE CONTAINS LE LOOP 40-44 THAT IS ABASENT IN 2X3N DBREF 6FHO A 1 398 UNP Q9HWJ1 Q9HWJ1_PSEAE 1 398 SEQADV 6FHO GLY A 0 UNP Q9HWJ1 EXPRESSION TAG SEQRES 1 A 399 GLY MET THR ASP ASN HIS ILE ASP VAL LEU ILE ASN GLY SEQRES 2 A 399 CYS GLY ILE GLY GLY ALA MET LEU ALA TYR LEU LEU GLY SEQRES 3 A 399 ARG GLN GLY HIS ARG VAL VAL VAL VAL GLU GLN ALA ARG SEQRES 4 A 399 ARG GLU ARG ALA ILE ASN GLY ALA ASP LEU LEU LYS PRO SEQRES 5 A 399 ALA GLY ILE ARG VAL VAL GLU ALA ALA GLY LEU LEU ALA SEQRES 6 A 399 GLU VAL THR ARG ARG GLY GLY ARG VAL ARG HIS GLU LEU SEQRES 7 A 399 GLU VAL TYR HIS ASP GLY GLU LEU LEU ARG TYR PHE ASN SEQRES 8 A 399 TYR SER SER VAL ASP ALA ARG GLY TYR PHE ILE LEU MET SEQRES 9 A 399 PRO CYS GLU SER LEU ARG ARG LEU VAL LEU GLU LYS ILE SEQRES 10 A 399 ASP GLY GLU ALA THR VAL GLU MET LEU PHE GLU THR ARG SEQRES 11 A 399 ILE GLU ALA VAL GLN ARG ASP GLU ARG HIS ALA ILE ASP SEQRES 12 A 399 GLN VAL ARG LEU ASN ASP GLY ARG VAL LEU ARG PRO ARG SEQRES 13 A 399 VAL VAL VAL GLY ALA ASP GLY ILE ALA SER TYR VAL ARG SEQRES 14 A 399 ARG ARG LEU LEU ASP ILE ASP VAL GLU ARG ARG PRO TYR SEQRES 15 A 399 PRO SER PRO MET LEU VAL GLY THR PHE ALA LEU ALA PRO SEQRES 16 A 399 CYS VAL ALA GLU ARG ASN ARG LEU TYR VAL ASP SER GLN SEQRES 17 A 399 GLY GLY LEU ALA TYR PHE TYR PRO ILE GLY PHE ASP ARG SEQRES 18 A 399 ALA ARG LEU VAL VAL SER PHE PRO ARG GLU GLU ALA ARG SEQRES 19 A 399 GLU LEU MET ALA ASP THR ARG GLY GLU SER LEU ARG ARG SEQRES 20 A 399 ARG LEU GLN ARG PHE VAL GLY ASP GLU SER ALA GLU ALA SEQRES 21 A 399 ILE ALA ALA VAL THR GLY THR SER ARG PHE LYS GLY ILE SEQRES 22 A 399 PRO ILE GLY TYR LEU ASN LEU ASP ARG TYR TRP ALA ASP SEQRES 23 A 399 ASN VAL ALA MET LEU GLY ASP ALA ILE HIS ASN VAL HIS SEQRES 24 A 399 PRO ILE THR GLY GLN GLY MET ASN LEU ALA ILE GLU ASP SEQRES 25 A 399 ALA SER ALA LEU ALA ASP ALA LEU ASP LEU ALA LEU ARG SEQRES 26 A 399 ASP ALA CYS ALA LEU GLU ASP ALA LEU ALA GLY TYR GLN SEQRES 27 A 399 ALA GLU ARG PHE PRO VAL ASN GLN ALA ILE VAL SER TYR SEQRES 28 A 399 GLY HIS ALA LEU ALA THR SER LEU GLU ASP ARG GLN ARG SEQRES 29 A 399 PHE ALA GLY VAL PHE ASP THR ALA LEU GLN GLY SER SER SEQRES 30 A 399 ARG THR PRO GLU ALA LEU GLY GLY GLU ARG SER TYR GLN SEQRES 31 A 399 PRO VAL ARG SER PRO ALA PRO LEU GLY HET FAD A 401 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *125(H2 O) HELIX 1 AA1 GLY A 14 GLN A 27 1 14 HELIX 2 AA2 LYS A 50 ALA A 60 1 11 HELIX 3 AA3 LEU A 62 ARG A 69 1 8 HELIX 4 AA4 PRO A 104 GLY A 118 1 15 HELIX 5 AA5 SER A 165 LEU A 171 1 7 HELIX 6 AA6 ALA A 193 ARG A 199 1 7 HELIX 7 AA7 PRO A 228 ASP A 238 1 11 HELIX 8 AA8 GLY A 241 ARG A 250 1 10 HELIX 9 AA9 GLY A 253 GLU A 255 5 3 HELIX 10 AB1 SER A 256 ALA A 262 1 7 HELIX 11 AB2 GLY A 291 ALA A 293 5 3 HELIX 12 AB3 HIS A 298 GLY A 302 5 5 HELIX 13 AB4 GLN A 303 ARG A 324 1 22 HELIX 14 AB5 ALA A 328 THR A 356 1 29 HELIX 15 AB6 ASP A 360 THR A 370 1 11 SHEET 1 AA1 6 VAL A 122 PHE A 126 0 SHEET 2 AA1 6 VAL A 31 GLU A 35 1 N VAL A 33 O LEU A 125 SHEET 3 AA1 6 HIS A 5 ASN A 11 1 N ILE A 10 O VAL A 34 SHEET 4 AA1 6 VAL A 151 GLY A 159 1 O VAL A 158 N ASN A 11 SHEET 5 AA1 6 ILE A 141 LEU A 146 -1 N VAL A 144 O LEU A 152 SHEET 6 AA1 6 ILE A 130 ARG A 135 -1 N ALA A 132 O ARG A 145 SHEET 1 AA2 6 VAL A 122 PHE A 126 0 SHEET 2 AA2 6 VAL A 31 GLU A 35 1 N VAL A 33 O LEU A 125 SHEET 3 AA2 6 HIS A 5 ASN A 11 1 N ILE A 10 O VAL A 34 SHEET 4 AA2 6 VAL A 151 GLY A 159 1 O VAL A 158 N ASN A 11 SHEET 5 AA2 6 VAL A 287 MET A 289 1 O ALA A 288 N GLY A 159 SHEET 6 AA2 6 TRP A 283 ALA A 284 -1 N ALA A 284 O VAL A 287 SHEET 1 AA3 3 LEU A 48 LEU A 49 0 SHEET 2 AA3 3 PHE A 100 LEU A 102 -1 O ILE A 101 N LEU A 49 SHEET 3 AA3 3 ARG A 72 ARG A 74 -1 N ARG A 74 O PHE A 100 SHEET 1 AA4 7 GLU A 84 ASN A 90 0 SHEET 2 AA4 7 GLU A 76 HIS A 81 -1 N VAL A 79 O LEU A 86 SHEET 3 AA4 7 ASN A 200 VAL A 204 1 O LEU A 202 N TYR A 80 SHEET 4 AA4 7 LEU A 210 ILE A 216 -1 O ALA A 211 N TYR A 203 SHEET 5 AA4 7 ARG A 220 SER A 226 -1 O ARG A 222 N TYR A 214 SHEET 6 AA4 7 MET A 185 ALA A 191 -1 N PHE A 190 O ALA A 221 SHEET 7 AA4 7 LYS A 270 GLY A 271 -1 O LYS A 270 N VAL A 187 SHEET 1 AA5 2 LEU A 277 ASN A 278 0 SHEET 2 AA5 2 HIS A 295 ASN A 296 -1 O ASN A 296 N LEU A 277 SITE 1 AC1 31 ASN A 11 GLY A 12 GLY A 14 ILE A 15 SITE 2 AC1 31 GLY A 16 VAL A 34 GLU A 35 GLN A 36 SITE 3 AC1 31 ARG A 41 ASN A 44 GLY A 45 ALA A 46 SITE 4 AC1 31 ALA A 160 ASP A 161 TYR A 166 ILE A 272 SITE 5 AC1 31 GLY A 291 ASP A 292 PRO A 299 GLY A 302 SITE 6 AC1 31 GLN A 303 GLY A 304 ALA A 308 ALA A 326 SITE 7 AC1 31 HOH A 502 HOH A 511 HOH A 525 HOH A 533 SITE 8 AC1 31 HOH A 564 HOH A 577 HOH A 578 CRYST1 47.077 63.257 128.628 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007774 0.00000