HEADER TRANSCRIPTION 15-JAN-18 6FHU TITLE CRYSTAL STRUCTURE OF BAZ2A PHD ZINC FINGER IN COMPLEX WITH H3 3-MER TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRANSCRIPTION TERMINATION FACTOR I-INTERACTING PROTEIN 5, COMPND 5 TIP5,HWALP3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-ARG-TAM; COMPND 9 CHAIN: F, H, G; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAZ2A, KIAA0314, TIP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, PHD ZINC FINGER, BROMODOMAIN, BAZ2A, HISTONE, 3-MER, KEYWDS 2 EPIGENETIC H3 EXPDTA X-RAY DIFFRACTION AUTHOR A.AMATO,X.LUCAS,A.BORTOLUZZI,D.WRIGHT,A.CIULLI REVDAT 3 02-MAY-18 6FHU 1 JRNL REVDAT 2 28-MAR-18 6FHU 1 JRNL DBREF REVDAT 1 21-MAR-18 6FHU 0 JRNL AUTH A.AMATO,X.LUCAS,A.BORTOLUZZI,D.WRIGHT,A.CIULLI JRNL TITL TARGETING LIGANDABLE POCKETS ON PLANT HOMEODOMAIN (PHD) ZINC JRNL TITL 2 FINGER DOMAINS BY A FRAGMENT-BASED APPROACH. JRNL REF ACS CHEM. BIOL. V. 13 915 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29529862 JRNL DOI 10.1021/ACSCHEMBIO.7B01093 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 969 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1292 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.114 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1758 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1576 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2363 ; 1.552 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3603 ; 3.341 ; 3.016 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 5.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;28.810 ;23.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;12.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;11.907 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1898 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 362 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 866 ; 0.916 ; 2.453 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 867 ; 0.916 ; 2.458 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1072 ; 1.552 ; 3.642 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1073 ; 1.551 ; 3.649 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 892 ; 1.305 ; 2.570 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 891 ; 1.305 ; 2.565 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1290 ; 1.800 ; 3.836 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1823 ; 6.139 ;29.287 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1822 ; 6.141 ;29.196 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1676 A 1728 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7590 32.9030 19.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.1060 REMARK 3 T33: 0.0440 T12: 0.0624 REMARK 3 T13: 0.0019 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.5993 L22: 3.7748 REMARK 3 L33: 2.8956 L12: -1.7227 REMARK 3 L13: 2.1703 L23: -2.3166 REMARK 3 S TENSOR REMARK 3 S11: 0.1399 S12: 0.3168 S13: -0.0777 REMARK 3 S21: -0.3038 S22: -0.2616 S23: 0.0286 REMARK 3 S31: 0.2343 S32: 0.3767 S33: 0.1217 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1676 B 1726 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3650 24.6610 45.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.1236 REMARK 3 T33: 0.1772 T12: 0.0785 REMARK 3 T13: -0.0554 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.7854 L22: 2.0634 REMARK 3 L33: 4.0021 L12: -0.7736 REMARK 3 L13: -3.0269 L23: -0.1311 REMARK 3 S TENSOR REMARK 3 S11: -0.1674 S12: -0.3107 S13: -0.1874 REMARK 3 S21: -0.1407 S22: -0.2516 S23: -0.0250 REMARK 3 S31: 0.1848 S32: 0.4874 S33: 0.4190 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1676 C 1727 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3920 38.6760 34.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.0697 REMARK 3 T33: 0.0473 T12: 0.0066 REMARK 3 T13: 0.0312 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 1.4046 L22: 3.2255 REMARK 3 L33: 2.2215 L12: 0.9103 REMARK 3 L13: -0.3089 L23: -2.3601 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.0216 S13: 0.0146 REMARK 3 S21: 0.0438 S22: -0.1318 S23: -0.0823 REMARK 3 S31: 0.1117 S32: 0.1941 S33: 0.1872 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1676 D 1728 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7480 23.5420 30.2130 REMARK 3 T TENSOR REMARK 3 T11: 0.1021 T22: 0.0613 REMARK 3 T33: 0.0450 T12: -0.0189 REMARK 3 T13: 0.0629 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 3.5307 L22: 2.4542 REMARK 3 L33: 3.6681 L12: 2.5723 REMARK 3 L13: -2.5408 L23: -2.8578 REMARK 3 S TENSOR REMARK 3 S11: -0.3424 S12: 0.2802 S13: -0.1694 REMARK 3 S21: -0.2596 S22: 0.0948 S23: -0.1654 REMARK 3 S31: 0.3440 S32: -0.0053 S33: 0.2476 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2-2.4 M SODIUM/POTASSIUM PHOSPHATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.83550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.69250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.69250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.75325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.69250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.69250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.91775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.69250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.69250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.75325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.69250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.69250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.91775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.83550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1671 REMARK 465 MET A 1672 REMARK 465 SER A 1673 REMARK 465 VAL A 1674 REMARK 465 ASN A 1675 REMARK 465 LYS A 1676 REMARK 465 HIS B 1671 REMARK 465 MET B 1672 REMARK 465 SER B 1673 REMARK 465 VAL B 1674 REMARK 465 ASN B 1675 REMARK 465 GLN B 1727 REMARK 465 VAL B 1728 REMARK 465 HIS C 1671 REMARK 465 MET C 1672 REMARK 465 SER C 1673 REMARK 465 VAL C 1674 REMARK 465 ASN C 1675 REMARK 465 VAL C 1728 REMARK 465 HIS D 1671 REMARK 465 MET D 1672 REMARK 465 SER D 1673 REMARK 465 VAL D 1674 REMARK 465 ASN D 1675 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B1676 CG CD CE NZ REMARK 470 ASP B1698 CG OD1 OD2 REMARK 470 GLN B1726 CG CD OE1 NE2 REMARK 470 LYS C1684 NZ REMARK 470 GLU D1711 CG CD OE1 OE2 REMARK 470 GLU D1715 CG CD OE1 OE2 REMARK 470 ARG F 2 CD NE CZ NH1 NH2 REMARK 470 ARG G 2 CD NE CZ NH1 NH2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1679 SG REMARK 620 2 CYS A1682 SG 106.3 REMARK 620 3 HIS A1702 ND1 97.3 97.9 REMARK 620 4 CYS A1705 SG 117.0 117.1 118.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1694 SG REMARK 620 2 CYS A1697 SG 111.4 REMARK 620 3 CYS A1720 SG 113.2 102.9 REMARK 620 4 CYS A1723 SG 101.5 111.1 117.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1679 SG REMARK 620 2 CYS B1682 SG 109.6 REMARK 620 3 HIS B1702 ND1 98.7 98.0 REMARK 620 4 CYS B1705 SG 114.1 116.1 117.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1694 SG REMARK 620 2 CYS B1697 SG 106.5 REMARK 620 3 CYS B1720 SG 114.7 107.6 REMARK 620 4 CYS B1723 SG 101.3 112.7 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1679 SG REMARK 620 2 CYS C1682 SG 107.0 REMARK 620 3 HIS C1702 ND1 102.2 100.3 REMARK 620 4 CYS C1705 SG 117.5 113.5 114.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1694 SG REMARK 620 2 CYS C1697 SG 112.5 REMARK 620 3 CYS C1720 SG 113.0 105.1 REMARK 620 4 CYS C1723 SG 103.8 110.4 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D1679 SG REMARK 620 2 CYS D1682 SG 107.7 REMARK 620 3 HIS D1702 ND1 100.8 101.4 REMARK 620 4 CYS D1705 SG 116.3 114.0 114.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D1694 SG REMARK 620 2 CYS D1697 SG 113.3 REMARK 620 3 CYS D1720 SG 114.5 103.7 REMARK 620 4 CYS D1723 SG 99.9 110.6 115.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG F 2 and 9AT F 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG G 2 and 9AT G 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG H 2 and 9AT H 3 DBREF 6FHU A 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 6FHU B 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 6FHU C 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 6FHU D 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 6FHU F 1 3 PDB 6FHU 6FHU 1 3 DBREF 6FHU H 1 3 PDB 6FHU 6FHU 1 3 DBREF 6FHU G 1 3 PDB 6FHU 6FHU 1 3 SEQADV 6FHU HIS A 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FHU MET A 1672 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FHU HIS B 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FHU MET B 1672 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FHU HIS C 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FHU MET C 1672 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FHU HIS D 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 6FHU MET D 1672 UNP Q9UIF9 EXPRESSION TAG SEQRES 1 A 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 A 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 A 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 A 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 A 58 CYS LEU ALA GLN GLN VAL SEQRES 1 B 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 B 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 B 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 B 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 B 58 CYS LEU ALA GLN GLN VAL SEQRES 1 C 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 C 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 C 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 C 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 C 58 CYS LEU ALA GLN GLN VAL SEQRES 1 D 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 D 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 D 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 D 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 D 58 CYS LEU ALA GLN GLN VAL SEQRES 1 F 3 ALA ARG 9AT SEQRES 1 H 3 ALA ARG 9AT SEQRES 1 G 3 ALA ARG 9AT HET 9AT F 3 8 HET 9AT H 3 8 HET 9AT G 3 8 HET ZN A1801 1 HET ZN A1802 1 HET PO4 A1803 5 HET ZN B1801 1 HET ZN B1802 1 HET PO4 B1803 5 HET ZN C1801 1 HET ZN C1802 1 HET GOL C1803 6 HET ZN D1801 1 HET ZN D1802 1 HET PO4 D1803 5 HETNAM 9AT (2S,3R)-2-AMINO-3-HYDROXY-BUTANAMIDE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN 9AT AMIDATED THREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 9AT 3(C4 H10 N2 O2) FORMUL 8 ZN 8(ZN 2+) FORMUL 10 PO4 3(O4 P 3-) FORMUL 16 GOL C3 H8 O3 FORMUL 20 HOH *195(H2 O) HELIX 1 AA1 ASN A 1687 GLU A 1689 5 3 HELIX 2 AA2 TYR A 1704 HIS A 1706 5 3 HELIX 3 AA3 CYS A 1720 ALA A 1725 1 6 HELIX 4 AA4 ASN B 1687 GLU B 1689 5 3 HELIX 5 AA5 CYS B 1720 ALA B 1725 1 6 HELIX 6 AA6 ASN C 1687 GLU C 1689 5 3 HELIX 7 AA7 CYS C 1720 ALA C 1725 1 6 HELIX 8 AA8 ASN D 1687 GLU D 1689 5 3 HELIX 9 AA9 CYS D 1720 ALA D 1725 1 6 SHEET 1 AA1 2 LEU A1691 LEU A1693 0 SHEET 2 AA1 2 GLY A1700 HIS A1702 -1 O CYS A1701 N LEU A1692 SHEET 1 AA2 2 LEU B1691 LEU B1693 0 SHEET 2 AA2 2 GLY B1700 HIS B1702 -1 O CYS B1701 N LEU B1692 SHEET 1 AA3 2 LEU C1691 LEU C1693 0 SHEET 2 AA3 2 GLY C1700 HIS C1702 -1 O CYS C1701 N LEU C1692 SHEET 1 AA4 2 LEU D1691 LEU D1693 0 SHEET 2 AA4 2 GLY D1700 HIS D1702 -1 O CYS D1701 N LEU D1692 LINK SG CYS A1679 ZN ZN A1801 1555 1555 2.32 LINK SG CYS A1682 ZN ZN A1801 1555 1555 2.35 LINK SG CYS A1694 ZN ZN A1802 1555 1555 2.31 LINK SG CYS A1697 ZN ZN A1802 1555 1555 2.31 LINK ND1 HIS A1702 ZN ZN A1801 1555 1555 2.03 LINK SG CYS A1705 ZN ZN A1801 1555 1555 2.32 LINK SG CYS A1720 ZN ZN A1802 1555 1555 2.37 LINK SG CYS A1723 ZN ZN A1802 1555 1555 2.34 LINK SG CYS B1679 ZN ZN B1801 1555 1555 2.32 LINK SG CYS B1682 ZN ZN B1801 1555 1555 2.36 LINK SG CYS B1694 ZN ZN B1802 1555 1555 2.35 LINK SG CYS B1697 ZN ZN B1802 1555 1555 2.32 LINK ND1 HIS B1702 ZN ZN B1801 1555 1555 2.07 LINK SG CYS B1705 ZN ZN B1801 1555 1555 2.31 LINK SG CYS B1720 ZN ZN B1802 1555 1555 2.33 LINK SG CYS B1723 ZN ZN B1802 1555 1555 2.32 LINK SG CYS C1679 ZN ZN C1801 1555 1555 2.35 LINK SG CYS C1682 ZN ZN C1801 1555 1555 2.33 LINK SG CYS C1694 ZN ZN C1802 1555 1555 2.33 LINK SG CYS C1697 ZN ZN C1802 1555 1555 2.30 LINK ND1 HIS C1702 ZN ZN C1801 1555 1555 2.10 LINK SG CYS C1705 ZN ZN C1801 1555 1555 2.31 LINK SG CYS C1720 ZN ZN C1802 1555 1555 2.35 LINK SG CYS C1723 ZN ZN C1802 1555 1555 2.31 LINK SG CYS D1679 ZN ZN D1801 1555 1555 2.35 LINK SG CYS D1682 ZN ZN D1801 1555 1555 2.35 LINK SG CYS D1694 ZN ZN D1802 1555 1555 2.31 LINK SG CYS D1697 ZN ZN D1802 1555 1555 2.31 LINK ND1 HIS D1702 ZN ZN D1801 1555 1555 2.01 LINK SG CYS D1705 ZN ZN D1801 1555 1555 2.32 LINK SG CYS D1720 ZN ZN D1802 1555 1555 2.35 LINK SG CYS D1723 ZN ZN D1802 1555 1555 2.35 LINK C ARG F 2 N 9AT F 3 1555 1555 1.34 LINK C ARG H 2 N 9AT H 3 1555 1555 1.34 LINK C ARG G 2 N 9AT G 3 1555 1555 1.34 CISPEP 1 ARG A 1707 PRO A 1708 0 8.18 CISPEP 2 ARG B 1707 PRO B 1708 0 8.63 CISPEP 3 ARG C 1707 PRO C 1708 0 4.97 CISPEP 4 ARG D 1707 PRO D 1708 0 5.02 SITE 1 AC1 4 CYS A1679 CYS A1682 HIS A1702 CYS A1705 SITE 1 AC2 4 CYS A1694 CYS A1697 CYS A1720 CYS A1723 SITE 1 AC3 3 ARG A1707 HOH A1902 HOH A1911 SITE 1 AC4 4 CYS B1679 CYS B1682 HIS B1702 CYS B1705 SITE 1 AC5 4 CYS B1694 CYS B1697 CYS B1720 CYS B1723 SITE 1 AC6 3 ARG B1707 HOH B1910 HOH B1917 SITE 1 AC7 4 CYS C1679 CYS C1682 HIS C1702 CYS C1705 SITE 1 AC8 4 CYS C1694 CYS C1697 CYS C1720 CYS C1723 SITE 1 AC9 5 ASN A1687 ASP A1688 ARG C1707 LYS C1709 SITE 2 AC9 5 HOH C1901 SITE 1 AD1 4 CYS D1679 CYS D1682 HIS D1702 CYS D1705 SITE 1 AD2 4 CYS D1694 CYS D1697 CYS D1720 CYS D1723 SITE 1 AD3 5 ARG D1707 HOH D1901 HOH D1910 HOH D1912 SITE 2 AD3 5 HOH D1932 SITE 1 AD4 10 ASP A1688 GLU A1689 LEU A1691 LEU A1692 SITE 2 AD4 10 LEU A1693 VAL A1713 HOH A1906 ALA F 1 SITE 3 AD4 10 HOH F 101 HOH F 102 SITE 1 AD5 7 ASP D1688 LEU D1691 LEU D1692 LEU D1693 SITE 2 AD5 7 VAL D1713 HOH D1921 ALA G 1 SITE 1 AD6 10 ASP B1688 GLU B1689 LEU B1691 LEU B1693 SITE 2 AD6 10 HOH B1903 HOH B1907 ASP C1688 LEU C1691 SITE 3 AD6 10 ALA H 1 HOH H 702 CRYST1 73.385 73.385 99.671 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010033 0.00000