HEADER HYDROLASE 15-JAN-18 6FHV TITLE CRYSTAL STRUCTURE OF PENICILLIUM OXALICUM GLUCOAMYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOAMYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE,GLUCAN 1,4-ALPHA- COMPND 5 GLUCOSIDASE; COMPND 6 EC: 3.2.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM OXALICUM (STRAIN 114-2 / CGMCC SOURCE 3 5302); SOURCE 4 ORGANISM_COMMON: PENICILLIUM DECUMBENS; SOURCE 5 ORGANISM_TAXID: 933388; SOURCE 6 STRAIN: 114-2 / CGMCC 5302; SOURCE 7 GENE: PDE_05527; SOURCE 8 EXPRESSION_SYSTEM: PENICILLIUM OXALICUM; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 69781 KEYWDS GLYCOSYLATION, STARCH DEGRADATION, GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ROTH,O.V.MOROZ,A.ARIZA,E.P.FRIIS,G.J.DAVIES,K.S.WILSON REVDAT 2 29-JUL-20 6FHV 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 09-MAY-18 6FHV 0 JRNL AUTH C.ROTH,O.V.MOROZ,A.ARIZA,L.K.SKOV,K.AYABE,G.J.DAVIES, JRNL AUTH 2 K.S.WILSON JRNL TITL STRUCTURAL INSIGHT INTO INDUSTRIALLY RELEVANT GLUCOAMYLASES: JRNL TITL 2 FLEXIBLE POSITIONS OF STARCH-BINDING DOMAINS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 463 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29717717 JRNL DOI 10.1107/S2059798318004989 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3727 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4559 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4828 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4258 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6583 ; 1.634 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9935 ; 3.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 587 ; 6.148 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;35.179 ;24.507 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 720 ;15.636 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.359 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 718 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5359 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 997 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2348 ; 0.827 ; 2.351 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2347 ; 0.826 ; 2.351 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2935 ; 1.295 ; 3.521 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -41.4940 -17.7790 -34.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.2573 REMARK 3 T33: 0.1956 T12: -0.0907 REMARK 3 T13: -0.0052 T23: -0.0940 REMARK 3 L TENSOR REMARK 3 L11: 10.0941 L22: 2.6273 REMARK 3 L33: 1.4004 L12: -4.6135 REMARK 3 L13: 0.1813 L23: -0.3049 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: 0.3864 S13: -0.5568 REMARK 3 S21: -0.0303 S22: -0.1374 S23: 0.4883 REMARK 3 S31: 0.1471 S32: -0.4355 S33: 0.0651 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0030 -10.3090 -20.7670 REMARK 3 T TENSOR REMARK 3 T11: 0.0405 T22: 0.1038 REMARK 3 T33: 0.0547 T12: -0.0449 REMARK 3 T13: 0.0143 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.7046 L22: 1.4489 REMARK 3 L33: 1.8129 L12: -0.1405 REMARK 3 L13: -0.4991 L23: 0.4867 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.0300 S13: -0.1558 REMARK 3 S21: 0.0902 S22: -0.0949 S23: 0.1893 REMARK 3 S31: 0.2627 S32: -0.2917 S33: 0.1330 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 448 REMARK 3 ORIGIN FOR THE GROUP (A): -45.0300 4.5840 -27.2660 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.2674 REMARK 3 T33: 0.0530 T12: 0.0382 REMARK 3 T13: -0.0011 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.1017 L22: 1.5871 REMARK 3 L33: 2.4427 L12: -0.6109 REMARK 3 L13: -0.4175 L23: 0.5698 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: 0.2106 S13: -0.0323 REMARK 3 S21: 0.0608 S22: -0.0942 S23: 0.2100 REMARK 3 S31: -0.1690 S32: -0.5291 S33: 0.0637 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 449 A 595 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8280 -16.0960 -34.8530 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0450 REMARK 3 T33: 0.0264 T12: -0.0008 REMARK 3 T13: -0.0197 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.3652 L22: 0.6228 REMARK 3 L33: 1.1229 L12: -0.4263 REMARK 3 L13: -0.7360 L23: 0.4806 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.1606 S13: -0.1625 REMARK 3 S21: -0.0302 S22: -0.0236 S23: 0.0546 REMARK 3 S31: 0.1253 S32: -0.1041 S33: 0.0418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6FHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9173 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53301 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PCB BIS-TRIS-PROPANE BUFFER PEG1500; REMARK 280 THIRD SILVER BULLET CONDITION G2 THIODIGLYCOLIC ACID, ADIPIC REMARK 280 ACID, BENZOIC ACID,OXALIC ACID ANHYDROUS, TEREPHTALIC ACID, 20 REMARK 280 MM HEPES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 94.62650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.63264 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.45967 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 94.62650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 54.63264 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.45967 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 94.62650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 54.63264 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.45967 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 94.62650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 54.63264 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.45967 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 94.62650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 54.63264 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.45967 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 94.62650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 54.63264 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.45967 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 109.26527 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 76.91933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 109.26527 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 76.91933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 109.26527 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 76.91933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 109.26527 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.91933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 109.26527 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 76.91933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 109.26527 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 76.91933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 120070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 23 REMARK 465 ASP A 24 REMARK 465 PRO A 25 REMARK 465 LYS A 26 REMARK 465 GLY A 27 REMARK 465 GLY A 28 REMARK 465 ASN A 29 REMARK 465 ARG A 98 REMARK 465 ALA A 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 545 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 751 O HOH A 751 18444 1.16 REMARK 500 O HOH A 849 O HOH A 849 4554 1.21 REMARK 500 O HOH A 738 O HOH A 738 4554 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 81 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 81 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 228 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 341 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 341 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 465 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 213 30.58 72.06 REMARK 500 ASP A 281 142.79 -170.02 REMARK 500 ASP A 283 -52.61 -28.69 REMARK 500 SER A 447 -158.65 61.35 REMARK 500 THR A 498 -53.95 -132.20 REMARK 500 LYS A 506 -106.89 -111.93 REMARK 500 LYS A 511 -89.91 -126.14 REMARK 500 GLU A 522 115.44 -160.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 6FHV A 23 615 UNP S7ZIW0 S7ZIW0_PENO1 23 615 SEQADV 6FHV ASN A 74 UNP S7ZIW0 ASP 74 CONFLICT SEQADV 6FHV VAL A 100 UNP S7ZIW0 LYS 100 CONFLICT SEQADV 6FHV ARG A 113 UNP S7ZIW0 GLN 113 CONFLICT SEQADV 6FHV SER A 400 UNP S7ZIW0 PRO 400 CONFLICT SEQADV 6FHV TYR A 406 UNP S7ZIW0 PHE 406 CONFLICT SEQADV 6FHV LYS A 408 UNP S7ZIW0 SER 408 CONFLICT SEQADV 6FHV SER A 415 UNP S7ZIW0 ALA 415 CONFLICT SEQADV 6FHV ALA A 444 UNP S7ZIW0 THR 444 CONFLICT SEQADV 6FHV VAL A 508 UNP S7ZIW0 ILE 508 CONFLICT SEQADV 6FHV PHE A 616 UNP S7ZIW0 EXPRESSION TAG SEQRES 1 A 594 PRO ASP PRO LYS GLY GLY ASN LEU THR PRO PHE ILE HIS SEQRES 2 A 594 LYS GLU GLY GLU ARG SER LEU GLN GLY ILE LEU ASP ASN SEQRES 3 A 594 LEU GLY GLY ARG GLY LYS LYS THR PRO GLY THR ALA ALA SEQRES 4 A 594 GLY LEU PHE ILE ALA SER PRO ASN THR GLU ASN PRO ASN SEQRES 5 A 594 TYR TYR TYR THR TRP THR ARG ASP SER ALA LEU THR ALA SEQRES 6 A 594 LYS CYS LEU ILE ASP LEU PHE GLU ASP SER ARG ALA VAL SEQRES 7 A 594 PHE PRO ILE ASP ARG LYS TYR LEU GLU THR GLY ILE ARG SEQRES 8 A 594 ASP TYR VAL SER SER GLN ALA ILE LEU GLN SER VAL SER SEQRES 9 A 594 ASN PRO SER GLY THR LEU LYS ASP GLY SER GLY LEU GLY SEQRES 10 A 594 GLU PRO LYS PHE GLU ILE ASP LEU ASN PRO PHE SER GLY SEQRES 11 A 594 ALA TRP GLY ARG PRO GLN ARG ASP GLY PRO ALA LEU ARG SEQRES 12 A 594 ALA THR ALA MET ILE THR TYR ALA ASN TYR LEU ILE SER SEQRES 13 A 594 HIS GLY GLN LYS SER ASP VAL SER GLN VAL MET TRP PRO SEQRES 14 A 594 ILE ILE ALA ASN ASP LEU ALA TYR VAL GLY GLN TYR TRP SEQRES 15 A 594 ASN ASN THR GLY PHE ASP LEU TRP GLU GLU VAL ASP GLY SEQRES 16 A 594 SER SER PHE PHE THR ILE ALA VAL GLN HIS ARG ALA LEU SEQRES 17 A 594 VAL GLU GLY SER GLN LEU ALA LYS LYS LEU GLY LYS SER SEQRES 18 A 594 CYS ASP ALA CYS ASP SER GLN PRO PRO GLN ILE LEU CYS SEQRES 19 A 594 PHE LEU GLN SER PHE TRP ASN GLY LYS TYR ILE THR SER SEQRES 20 A 594 ASN ILE ASN THR GLN ALA SER ARG SER GLY ILE ASP LEU SEQRES 21 A 594 ASP SER VAL LEU GLY SER ILE HIS THR PHE ASP PRO GLU SEQRES 22 A 594 ALA ALA CYS ASP ASP ALA THR PHE GLN PRO CYS SER ALA SEQRES 23 A 594 ARG ALA LEU ALA ASN HIS LYS VAL TYR VAL ASP SER PHE SEQRES 24 A 594 ARG SER ILE TYR LYS ILE ASN ALA GLY LEU ALA GLU GLY SEQRES 25 A 594 SER ALA ALA ASN VAL GLY ARG TYR PRO GLU ASP VAL TYR SEQRES 26 A 594 GLN GLY GLY ASN PRO TRP TYR LEU ALA THR LEU GLY ALA SEQRES 27 A 594 SER GLU LEU LEU TYR ASP ALA LEU TYR GLN TRP ASP ARG SEQRES 28 A 594 LEU GLY LYS LEU GLU VAL SER GLU THR SER LEU SER PHE SEQRES 29 A 594 PHE LYS ASP PHE ASP ALA THR VAL LYS ILE GLY SER TYR SEQRES 30 A 594 SER ARG ASN SER LYS THR TYR LYS LYS LEU THR GLN SER SEQRES 31 A 594 ILE LYS SER TYR ALA ASP GLY PHE ILE GLN LEU VAL GLN SEQRES 32 A 594 GLN TYR THR PRO SER ASN GLY SER LEU ALA GLU GLN TYR SEQRES 33 A 594 ASP ARG ASN THR ALA ALA PRO LEU SER ALA ASN ASP LEU SEQRES 34 A 594 THR TRP SER PHE ALA SER PHE LEU THR ALA THR GLN ARG SEQRES 35 A 594 ARG ASP ALA VAL VAL PRO PRO SER TRP GLY ALA LYS SER SEQRES 36 A 594 ALA ASN LYS VAL PRO THR THR CYS SER ALA SER PRO VAL SEQRES 37 A 594 VAL GLY THR TYR LYS ALA PRO THR ALA THR PHE SER SER SEQRES 38 A 594 LYS THR LYS CYS VAL PRO ALA LYS ASP ILE VAL PRO ILE SEQRES 39 A 594 THR PHE TYR LEU ILE GLU ASN THR TYR TYR GLY GLU ASN SEQRES 40 A 594 VAL PHE MET SER GLY ASN ILE THR ALA LEU GLY ASN TRP SEQRES 41 A 594 ASP ALA LYS LYS GLY PHE PRO LEU THR ALA ASN LEU TYR SEQRES 42 A 594 THR GLN ASP GLN ASN LEU TRP PHE ALA SER VAL GLU PHE SEQRES 43 A 594 ILE PRO ALA GLY THR PRO PHE GLU TYR LYS TYR TYR LYS SEQRES 44 A 594 VAL GLU PRO ASN GLY ASP ILE THR TRP GLU LYS GLY PRO SEQRES 45 A 594 ASN ARG VAL PHE VAL ALA PRO THR GLY CYS PRO VAL GLN SEQRES 46 A 594 PRO HIS SER ASN ASP VAL TRP GLN PHE HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET B3P A 652 19 HET PG4 A 653 13 HET PEG A 654 7 HET NAG A 658 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 4 B3P C11 H26 N2 O6 FORMUL 5 PG4 C8 H18 O5 FORMUL 6 PEG C4 H10 O3 FORMUL 8 HOH *257(H2 O) HELIX 1 AA1 LEU A 30 ASN A 48 1 19 HELIX 2 AA2 THR A 80 ASP A 96 1 17 HELIX 3 AA3 ASP A 104 GLN A 123 1 20 HELIX 4 AA4 GLY A 135 GLU A 140 5 6 HELIX 5 AA5 ASP A 160 HIS A 179 1 20 HELIX 6 AA6 GLN A 181 TRP A 204 1 24 HELIX 7 AA7 PHE A 220 GLY A 241 1 22 HELIX 8 AA8 CYS A 244 GLN A 250 1 7 HELIX 9 AA9 GLN A 250 GLN A 259 1 10 HELIX 10 AB1 SER A 260 TRP A 262 5 3 HELIX 11 AB2 ASP A 281 HIS A 290 1 10 HELIX 12 AB3 SER A 307 SER A 323 1 17 HELIX 13 AB4 TYR A 325 ALA A 329 5 5 HELIX 14 AB5 VAL A 346 GLY A 350 5 5 HELIX 15 AB6 TRP A 353 GLY A 375 1 23 HELIX 16 AB7 SER A 383 ASP A 389 1 7 HELIX 17 AB8 SER A 403 TYR A 427 1 25 HELIX 18 AB9 LEU A 451 ASP A 466 1 16 HELIX 19 AC1 GLY A 474 ALA A 478 5 5 HELIX 20 AC2 ILE A 536 GLY A 540 5 5 HELIX 21 AC3 ASP A 543 GLY A 547 5 5 SHEET 1 AA1 2 THR A 78 TRP A 79 0 SHEET 2 AA1 2 LYS A 142 PHE A 143 -1 O PHE A 143 N THR A 78 SHEET 1 AA2 3 GLY A 208 PHE A 209 0 SHEET 2 AA2 3 ASP A 216 SER A 219 -1 O GLY A 217 N GLY A 208 SHEET 3 AA2 3 ASN A 270 ILE A 271 -1 O ILE A 271 N SER A 218 SHEET 1 AA3 2 LYS A 376 VAL A 379 0 SHEET 2 AA3 2 GLY A 397 SER A 400 -1 O TYR A 399 N LEU A 377 SHEET 1 AA4 2 GLN A 437 TYR A 438 0 SHEET 2 AA4 2 PRO A 445 LEU A 446 -1 O LEU A 446 N GLN A 437 SHEET 1 AA5 3 LEU A 561 VAL A 566 0 SHEET 2 AA5 3 ILE A 516 ILE A 521 -1 N LEU A 520 O TRP A 562 SHEET 3 AA5 3 HIS A 609 VAL A 613 1 O ASP A 612 N TYR A 519 SHEET 1 AA6 4 PHE A 548 PRO A 549 0 SHEET 2 AA6 4 ASN A 529 GLY A 534 -1 N MET A 532 O PHE A 548 SHEET 3 AA6 4 PRO A 574 VAL A 582 -1 O TYR A 580 N PHE A 531 SHEET 4 AA6 4 ILE A 588 TRP A 590 -1 O THR A 589 N LYS A 581 SHEET 1 AA7 4 PHE A 548 PRO A 549 0 SHEET 2 AA7 4 ASN A 529 GLY A 534 -1 N MET A 532 O PHE A 548 SHEET 3 AA7 4 PRO A 574 VAL A 582 -1 O TYR A 580 N PHE A 531 SHEET 4 AA7 4 ARG A 596 VAL A 599 -1 O ARG A 596 N TYR A 577 SSBOND 1 CYS A 244 CYS A 247 1555 1555 2.15 SSBOND 2 CYS A 256 CYS A 485 1555 1555 2.04 SSBOND 3 CYS A 298 CYS A 306 1555 1555 2.04 SSBOND 4 CYS A 507 CYS A 604 1555 1555 2.08 LINK ND2 ASN A 205 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 431 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 535 C1 NAG A 658 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 CISPEP 1 ASN A 72 PRO A 73 0 -4.33 CISPEP 2 ARG A 156 PRO A 157 0 -2.46 CRYST1 189.253 189.253 115.379 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005284 0.003051 0.000000 0.00000 SCALE2 0.000000 0.006101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008667 0.00000