HEADER TRANSFERASE 19-JAN-18 6FIO TITLE DDR1, 2-[1'-(1H-INDAZOLE-5-CARBONYL)-4-METHYL-2-OXOSPIRO[INDOLE-3,4'- TITLE 2 PIPERIDINE]-1-YL]-N-(2,2,2-TRIFLUOROETHYL)ACETAMIDE, 1.990A, P6522, TITLE 3 RFREE=27.7% COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TYROSINE KINASE DOMAIN, RESIDUES 593-913; COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 6 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 7 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 8 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 9 TYROSINE-PROTEIN KINASE CAK; COMPND 10 EC: 2.7.10.1; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS RTK, RECEPTOR TYROSINE KINASE, COLLAGEN, DISCOIDIN DOMAIN;, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.STIHLE,H.RICHTER,J.BENZ,B.KUHN,M.G.RUDOLPH REVDAT 3 01-MAY-24 6FIO 1 REMARK REVDAT 2 27-MAR-19 6FIO 1 JRNL REVDAT 1 28-NOV-18 6FIO 0 JRNL AUTH H.RICHTER,A.L.SATZ,M.BEDOUCHA,B.BUETTELMANN,A.C.PETERSEN, JRNL AUTH 2 A.HARMEIER,R.HERMOSILLA,R.HOCHSTRASSER,D.BURGER,B.GSELL, JRNL AUTH 3 R.GASSER,S.HUBER,M.N.HUG,B.KOCER,B.KUHN,M.RITTER, JRNL AUTH 4 M.G.RUDOLPH,F.WEIBEL,J.MOLINA-DAVID,J.J.KIM,J.V.SANTOS, JRNL AUTH 5 M.STIHLE,G.J.GEORGES,R.D.BONFIL,R.FRIDMAN,S.UHLES,S.MOLL, JRNL AUTH 6 C.FAUL,A.FORNONI,M.PRUNOTTO JRNL TITL DNA-ENCODED LIBRARY-DERIVED DDR1 INHIBITOR PREVENTS FIBROSIS JRNL TITL 2 AND RENAL FUNCTION LOSS IN A GENETIC MOUSE MODEL OF ALPORT JRNL TITL 3 SYNDROME. JRNL REF ACS CHEM.BIOL. V. 14 37 2019 JRNL REFN ESSN 1554-8937 JRNL PMID 30452219 JRNL DOI 10.1021/ACSCHEMBIO.8B00866 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2067 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 28758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4719 - 4.2865 1.00 2985 175 0.1540 0.1977 REMARK 3 2 4.2865 - 3.4026 1.00 2803 163 0.1650 0.2603 REMARK 3 3 3.4026 - 2.9725 1.00 2797 140 0.2117 0.2793 REMARK 3 4 2.9725 - 2.7008 0.99 2736 151 0.2266 0.3319 REMARK 3 5 2.7008 - 2.5072 0.99 2744 134 0.2531 0.2869 REMARK 3 6 2.5072 - 2.3594 0.99 2709 154 0.2632 0.3662 REMARK 3 7 2.3594 - 2.2412 0.99 2673 154 0.3375 0.4014 REMARK 3 8 2.2412 - 2.1437 0.98 2678 133 0.3334 0.3651 REMARK 3 9 2.1437 - 2.0612 0.98 2692 119 0.3670 0.4059 REMARK 3 10 2.0612 - 1.9900 0.92 2490 128 0.4216 0.4137 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2563 REMARK 3 ANGLE : 1.007 3478 REMARK 3 CHIRALITY : 0.043 371 REMARK 3 PLANARITY : 0.004 481 REMARK 3 DIHEDRAL : 16.304 1564 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 598 THROUGH 629 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4865 29.5137 -25.1302 REMARK 3 T TENSOR REMARK 3 T11: 0.5086 T22: 0.5759 REMARK 3 T33: 0.3131 T12: 0.0563 REMARK 3 T13: 0.0838 T23: -0.1505 REMARK 3 L TENSOR REMARK 3 L11: 6.7985 L22: 4.4789 REMARK 3 L33: 6.6187 L12: 1.2167 REMARK 3 L13: 3.0099 L23: -1.4745 REMARK 3 S TENSOR REMARK 3 S11: -0.2102 S12: 0.5312 S13: -0.1183 REMARK 3 S21: -0.3811 S22: -0.0168 S23: -0.1594 REMARK 3 S31: -0.0247 S32: -0.3303 S33: 0.1949 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 630 THROUGH 650 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7472 43.5246 -30.4523 REMARK 3 T TENSOR REMARK 3 T11: 1.2596 T22: 0.8760 REMARK 3 T33: 0.7267 T12: 0.0029 REMARK 3 T13: -0.1803 T23: 0.1086 REMARK 3 L TENSOR REMARK 3 L11: 3.7384 L22: 3.2732 REMARK 3 L33: 6.6220 L12: 3.2567 REMARK 3 L13: -3.1031 L23: -1.3774 REMARK 3 S TENSOR REMARK 3 S11: -0.6430 S12: 1.4987 S13: 1.3125 REMARK 3 S21: -1.1213 S22: 0.1755 S23: 0.9693 REMARK 3 S31: -1.5619 S32: -0.0474 S33: 0.5432 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 651 THROUGH 678 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8238 22.8066 -21.1316 REMARK 3 T TENSOR REMARK 3 T11: 0.4616 T22: 0.4940 REMARK 3 T33: 0.4440 T12: -0.0553 REMARK 3 T13: -0.0137 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 6.6469 L22: 9.7551 REMARK 3 L33: 4.1278 L12: 4.1918 REMARK 3 L13: -0.8164 L23: -1.0307 REMARK 3 S TENSOR REMARK 3 S11: -0.1754 S12: 0.1046 S13: -1.3464 REMARK 3 S21: -0.2564 S22: 0.0926 S23: -0.3809 REMARK 3 S31: 0.5840 S32: -0.3611 S33: 0.0884 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 679 THROUGH 708 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7278 33.8131 -20.9319 REMARK 3 T TENSOR REMARK 3 T11: 0.3670 T22: 0.4719 REMARK 3 T33: 0.2847 T12: -0.0539 REMARK 3 T13: 0.0421 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 3.5101 L22: 2.8585 REMARK 3 L33: 3.7690 L12: -1.1503 REMARK 3 L13: -0.2613 L23: -0.5485 REMARK 3 S TENSOR REMARK 3 S11: -0.1869 S12: 0.5054 S13: -0.3579 REMARK 3 S21: -0.5323 S22: 0.1587 S23: 0.0475 REMARK 3 S31: -0.1723 S32: 0.1346 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 709 THROUGH 733 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0031 45.6041 1.3812 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.4856 REMARK 3 T33: 0.4811 T12: -0.0753 REMARK 3 T13: -0.0218 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 7.8301 L22: 7.4544 REMARK 3 L33: 3.8590 L12: -1.8525 REMARK 3 L13: -3.2558 L23: -0.2824 REMARK 3 S TENSOR REMARK 3 S11: -0.2004 S12: -0.7136 S13: 0.6045 REMARK 3 S21: 0.4219 S22: 0.3791 S23: -1.1736 REMARK 3 S31: -0.2530 S32: 0.7818 S33: -0.1865 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 734 THROUGH 891 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8648 33.1578 3.7481 REMARK 3 T TENSOR REMARK 3 T11: 0.2585 T22: 0.2516 REMARK 3 T33: 0.2361 T12: -0.0292 REMARK 3 T13: -0.0041 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2972 L22: 1.0942 REMARK 3 L33: 2.7334 L12: -0.0680 REMARK 3 L13: 0.1041 L23: -0.2964 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.0020 S13: -0.0130 REMARK 3 S21: 0.0123 S22: -0.0382 S23: -0.0395 REMARK 3 S31: -0.0395 S32: -0.1273 S33: 0.0371 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 892 THROUGH 906 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2963 50.2636 2.3355 REMARK 3 T TENSOR REMARK 3 T11: 0.5847 T22: 0.3811 REMARK 3 T33: 0.3511 T12: 0.1085 REMARK 3 T13: -0.0395 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 8.4786 L22: 7.9506 REMARK 3 L33: 2.0356 L12: -0.3932 REMARK 3 L13: 1.0977 L23: 0.0844 REMARK 3 S TENSOR REMARK 3 S11: -0.2645 S12: -0.5328 S13: 0.8495 REMARK 3 S21: -0.0733 S22: -0.1916 S23: 0.4505 REMARK 3 S31: -1.1283 S32: -0.2266 S33: 0.4906 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 48.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 19.09 REMARK 200 R MERGE (I) : 0.23600 REMARK 200 R SYM (I) : 0.23600 REMARK 200 FOR THE DATA SET : 8.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 18.38 REMARK 200 R MERGE FOR SHELL (I) : 1.06200 REMARK 200 R SYM FOR SHELL (I) : 1.06200 REMARK 200 FOR SHELL : 0.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11.3 MG/ML PROTEIN IN 20MM HEPES/NAOH REMARK 280 PH7.5, 5MM DTT, 5% GLYCEROL, 0.1M NACL MIXED 1.3:1 WITH 90MM MES/ REMARK 280 NAOH PH6.5, 0.18M POTASSIUM IODIDE, 0.2M LI2SO4, 22.5% PEG 4K, REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.52533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.76267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.64400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.88133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.40667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.52533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 37.76267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 18.88133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 56.64400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 94.40667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1225 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 593 REMARK 465 GLY A 594 REMARK 465 ALA A 595 REMARK 465 VAL A 596 REMARK 465 GLY A 597 REMARK 465 PRO A 727 REMARK 465 GLY A 728 REMARK 465 VAL A 907 REMARK 465 HIS A 908 REMARK 465 HIS A 909 REMARK 465 HIS A 910 REMARK 465 HIS A 911 REMARK 465 HIS A 912 REMARK 465 HIS A 913 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 643 53.27 -93.61 REMARK 500 ALA A 722 37.53 -82.92 REMARK 500 ARG A 759 -11.82 77.34 REMARK 500 ARG A 759 -11.35 76.89 REMARK 500 ASP A 760 46.43 -143.44 REMARK 500 ALA A 777 -164.73 -127.61 REMARK 500 ASP A 778 87.63 -159.21 REMARK 500 ARG A 796 -132.63 -147.48 REMARK 500 GLU A 901 -71.26 -126.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DJH A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FER RELATED DB: PDB REMARK 900 RELATED ID: 6FEW RELATED DB: PDB REMARK 900 RELATED ID: 6FEX RELATED DB: PDB REMARK 900 RELATED ID: 6FIL RELATED DB: PDB REMARK 900 RELATED ID: 6FIM RELATED DB: PDB REMARK 900 RELATED ID: 6FIN RELATED DB: PDB DBREF 6FIO A 593 907 UNP Q08345 DDR1_HUMAN 593 913 SEQADV 6FIO HIS A 908 UNP Q08345 EXPRESSION TAG SEQADV 6FIO HIS A 909 UNP Q08345 EXPRESSION TAG SEQADV 6FIO HIS A 910 UNP Q08345 EXPRESSION TAG SEQADV 6FIO HIS A 911 UNP Q08345 EXPRESSION TAG SEQADV 6FIO HIS A 912 UNP Q08345 EXPRESSION TAG SEQADV 6FIO HIS A 913 UNP Q08345 EXPRESSION TAG SEQRES 1 A 321 PRO GLY ALA VAL GLY ASP GLY PRO PRO ARG VAL ASP PHE SEQRES 2 A 321 PRO ARG SER ARG LEU ARG PHE LYS GLU LYS LEU GLY GLU SEQRES 3 A 321 GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU VAL ASP SER SEQRES 4 A 321 PRO GLN ASP LEU VAL SER LEU ASP PHE PRO LEU ASN VAL SEQRES 5 A 321 ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL LYS ILE LEU SEQRES 6 A 321 ARG PRO ASP ALA THR LYS ASN ALA ARG ASN ASP PHE LEU SEQRES 7 A 321 LYS GLU VAL LYS ILE MET SER ARG LEU LYS ASP PRO ASN SEQRES 8 A 321 ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN ASP ASP PRO SEQRES 9 A 321 LEU CYS MET ILE THR ASP TYR MET GLU ASN GLY ASP LEU SEQRES 10 A 321 ASN GLN PHE LEU SER ALA HIS GLN LEU GLU ASP LYS ALA SEQRES 11 A 321 ALA GLU GLY ALA PRO GLY ASP PRO THR ILE SER TYR PRO SEQRES 12 A 321 MET LEU LEU HIS VAL ALA ALA GLN ILE ALA SER GLY MET SEQRES 13 A 321 ARG TYR LEU ALA THR LEU ASN PHE VAL HIS ARG ASP LEU SEQRES 14 A 321 ALA THR ARG ASN CYS LEU VAL GLY GLU ASN PHE THR ILE SEQRES 15 A 321 LYS ILE ALA ASP PHE GLY MET SER ARG ASN LEU TYR ALA SEQRES 16 A 321 GLY ASP TYR TYR ARG VAL GLN GLY ARG ALA VAL LEU PRO SEQRES 17 A 321 ILE ARG TRP MET ALA TRP GLU CYS ILE LEU MET GLY LYS SEQRES 18 A 321 PHE THR THR ALA SER ASP VAL TRP ALA PHE GLY VAL THR SEQRES 19 A 321 LEU TRP GLU VAL LEU MET LEU CYS ARG ALA GLN PRO PHE SEQRES 20 A 321 GLY GLN LEU THR ASP GLU GLN VAL ILE GLU ASN ALA GLY SEQRES 21 A 321 GLU PHE PHE ARG ASP GLN GLY ARG GLN VAL TYR LEU SER SEQRES 22 A 321 ARG PRO PRO ALA CYS PRO GLN GLY LEU TYR GLU LEU MET SEQRES 23 A 321 LEU ARG CYS TRP SER ARG GLU SER GLU GLN ARG PRO PRO SEQRES 24 A 321 PHE SER GLN LEU HIS ARG PHE LEU ALA GLU ASP ALA LEU SEQRES 25 A 321 ASN THR VAL HIS HIS HIS HIS HIS HIS HET DJH A1001 36 HETNAM DJH 2-[1'-(1~{H}-INDAZOL-5-YLCARBONYL)-4-METHYL-2- HETNAM 2 DJH OXIDANYLIDENE-SPIRO[INDOLE-3,4'-PIPERIDINE]-1-YL]- HETNAM 3 DJH ~{N}-[2,2,2-TRIS(FLUORANYL)ETHYL]ETHANAMIDE FORMUL 2 DJH C25 H24 F3 N5 O3 FORMUL 3 HOH *128(H2 O) HELIX 1 AA1 PRO A 606 SER A 608 5 3 HELIX 2 AA2 SER A 631 ASP A 639 5 9 HELIX 3 AA3 THR A 662 ARG A 678 1 17 HELIX 4 AA4 ASP A 708 ALA A 715 1 8 HELIX 5 AA5 SER A 733 LEU A 754 1 22 HELIX 6 AA6 ALA A 762 ARG A 764 5 3 HELIX 7 AA7 GLU A 770 PHE A 772 5 3 HELIX 8 AA8 ARG A 783 TYR A 790 5 8 HELIX 9 AA9 PRO A 800 MET A 804 5 5 HELIX 10 AB1 ALA A 805 LEU A 810 1 6 HELIX 11 AB2 THR A 815 MET A 832 1 18 HELIX 12 AB3 THR A 843 ASP A 857 1 15 HELIX 13 AB4 PRO A 871 CYS A 881 1 11 HELIX 14 AB5 GLU A 885 ARG A 889 5 5 HELIX 15 AB6 PRO A 891 GLU A 901 1 11 HELIX 16 AB7 ASP A 902 ASN A 905 5 4 SHEET 1 AA1 5 LEU A 610 GLY A 617 0 SHEET 2 AA1 5 GLY A 622 VAL A 629 -1 O LEU A 626 N GLU A 614 SHEET 3 AA1 5 LEU A 651 LEU A 657 -1 O ILE A 656 N GLU A 623 SHEET 4 AA1 5 CYS A 698 ASP A 702 -1 O MET A 699 N LYS A 655 SHEET 5 AA1 5 LEU A 687 CYS A 691 -1 N LEU A 688 O ILE A 700 SHEET 1 AA2 2 GLN A 717 LEU A 718 0 SHEET 2 AA2 2 THR A 731 ILE A 732 1 O ILE A 732 N GLN A 717 SHEET 1 AA3 2 CYS A 766 VAL A 768 0 SHEET 2 AA3 2 ILE A 774 ILE A 776 -1 O LYS A 775 N LEU A 767 SHEET 1 AA4 2 TYR A 791 ARG A 792 0 SHEET 2 AA4 2 VAL A 798 LEU A 799 -1 O LEU A 799 N TYR A 791 CISPEP 1 ASP A 639 PHE A 640 0 -1.82 CISPEP 2 ASP A 695 PRO A 696 0 -4.34 SITE 1 AC1 17 ALA A 653 LYS A 655 MET A 676 ILE A 684 SITE 2 AC1 17 ILE A 685 THR A 701 ASP A 702 TYR A 703 SITE 3 AC1 17 MET A 704 HIS A 758 ILE A 776 ALA A 777 SITE 4 AC1 17 ASP A 778 PHE A 779 HOH A1138 HOH A1144 SITE 5 AC1 17 HOH A1178 CRYST1 111.908 111.908 113.288 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008936 0.005159 0.000000 0.00000 SCALE2 0.000000 0.010318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008827 0.00000