HEADER HYDROLASE 19-JAN-18 6FIR TITLE HUMAN CYTOSOLIC 5'-NUCLEOTIDASE II SOAKED WITH 5MM3-PHENYL-N-(9H- TITLE 2 PURIN-6-YL)BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC PURINE 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOSOLIC 5'-NUCLEOTIDASE II; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE CONSTRUCT CONTAINS RESIDUES 1-536 OUT OF THE 561 COMPND 8 AMINO ACIDS OF THE ENZYME. MOREOVER AN N-TERMINAL HISTAG COMPND 9 (MGSSHHHHHHSSGLVPRGS) IS PRESENT. A NUMBER OF RESIDUES ARE NOT COMPND 10 VISIBLE IN THE ELECTRON DENSITY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5C2, NT5B, NT5CP, PNT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.AGHAJARI,P.PREETI REVDAT 3 17-JAN-24 6FIR 1 LINK REVDAT 2 06-MAR-19 6FIR 1 JRNL REVDAT 1 30-JAN-19 6FIR 0 JRNL AUTH R.GUILLON,R.RAHIMOVA,D.EGRON,S.ROUANET,C.DUMONTET, JRNL AUTH 2 N.AGHAJARI,L.P.JORDHEIM,L.CHALOIN,S.PEYROTTES JRNL TITL LEAD OPTIMIZATION AND BIOLOGICAL EVALUATION OF JRNL TITL 2 FRAGMENT-BASED CN-II INHIBITORS. JRNL REF EUR J MED CHEM V. 168 28 2019 JRNL REFN ISSN 1768-3254 JRNL PMID 30798051 JRNL DOI 10.1016/J.EJMECH.2019.02.040 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 25186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0000 - 5.1988 0.91 2706 143 0.1673 0.2125 REMARK 3 2 5.1988 - 4.1271 0.94 2661 140 0.1355 0.1767 REMARK 3 3 4.1271 - 3.6056 0.95 2677 141 0.1493 0.1988 REMARK 3 4 3.6056 - 3.2760 0.95 2650 138 0.1767 0.2605 REMARK 3 5 3.2760 - 3.0413 0.95 2666 141 0.2126 0.2611 REMARK 3 6 3.0413 - 2.8620 0.95 2669 140 0.2237 0.2739 REMARK 3 7 2.8620 - 2.7187 0.95 2636 139 0.2258 0.3319 REMARK 3 8 2.7187 - 2.6003 0.94 2609 137 0.2651 0.3104 REMARK 3 9 2.6003 - 2.5002 0.95 2653 140 0.3249 0.4317 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4017 REMARK 3 ANGLE : 0.943 5414 REMARK 3 CHIRALITY : 0.053 573 REMARK 3 PLANARITY : 0.006 680 REMARK 3 DIHEDRAL : 5.433 3298 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 45.6231 -25.0075 -19.1953 REMARK 3 T TENSOR REMARK 3 T11: 0.3506 T22: 0.3222 REMARK 3 T33: 0.3273 T12: -0.0130 REMARK 3 T13: 0.0161 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.4621 L22: 0.3552 REMARK 3 L33: 0.3325 L12: 0.1433 REMARK 3 L13: 0.0891 L23: -0.0332 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.0215 S13: -0.0413 REMARK 3 S21: -0.1013 S22: -0.0114 S23: -0.0358 REMARK 3 S31: 0.1197 S32: -0.0072 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2J2C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGSO4, TRIS AND LIGAND, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.46500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.34500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.46500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.34500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.46500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.84000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.34500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.46500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.84000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.34500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -282.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.93000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 90.93000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 403 REMARK 465 LYS A 404 REMARK 465 HIS A 405 REMARK 465 LEU A 406 REMARK 465 ASP A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 GLU A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 VAL A 490 REMARK 465 GLU A 491 REMARK 465 HIS A 492 REMARK 465 THR A 493 REMARK 465 HIS A 494 REMARK 465 VAL A 495 REMARK 465 ASP A 496 REMARK 465 ILE A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 MET A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ASN A 508 REMARK 465 ARG A 509 REMARK 465 THR A 510 REMARK 465 SER A 511 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 PHE A 514 REMARK 465 LYS A 515 REMARK 465 ASP A 516 REMARK 465 THR A 517 REMARK 465 ASP A 518 REMARK 465 TYR A 519 REMARK 465 LYS A 520 REMARK 465 ARG A 521 REMARK 465 HIS A 522 REMARK 465 GLN A 523 REMARK 465 LEU A 524 REMARK 465 THR A 525 REMARK 465 ARG A 526 REMARK 465 SER A 527 REMARK 465 ILE A 528 REMARK 465 SER A 529 REMARK 465 GLU A 530 REMARK 465 ILE A 531 REMARK 465 LYS A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 LEU A 536 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 489 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 289 C3 GOL A 608 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 53 -67.47 -107.31 REMARK 500 THR A 56 -71.10 -124.95 REMARK 500 LYS A 211 -31.06 -137.80 REMARK 500 ASN A 221 59.49 -153.63 REMARK 500 PRO A 267 22.85 -79.92 REMARK 500 PHE A 354 -63.08 -90.87 REMARK 500 ILE A 357 -67.88 -101.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD2 REMARK 620 2 ASP A 54 O 84.4 REMARK 620 3 ASP A 351 OD1 86.4 86.8 REMARK 620 4 HOH A 702 O 88.4 171.9 89.1 REMARK 620 5 HOH A 712 O 172.4 88.4 95.8 98.9 REMARK 620 6 HOH A 722 O 85.9 84.8 169.1 98.3 90.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 611 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H4B RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT LIGAND REMARK 900 RELATED ID: 5CQZ RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT CRYSTALLIZATION CONDITION REMARK 900 RELATED ID: 5CR7 RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT CRYSTALLIZATION CONDITION REMARK 900 RELATED ID: 2J2C RELATED DB: PDB REMARK 900 SAME PROTEIN, NATIVE DBREF 6FIR A 1 536 UNP P49902 5NTC_HUMAN 1 536 SEQADV 6FIR MET A -18 UNP P49902 INITIATING METHIONINE SEQADV 6FIR GLY A -17 UNP P49902 EXPRESSION TAG SEQADV 6FIR SER A -16 UNP P49902 EXPRESSION TAG SEQADV 6FIR SER A -15 UNP P49902 EXPRESSION TAG SEQADV 6FIR HIS A -14 UNP P49902 EXPRESSION TAG SEQADV 6FIR HIS A -13 UNP P49902 EXPRESSION TAG SEQADV 6FIR HIS A -12 UNP P49902 EXPRESSION TAG SEQADV 6FIR HIS A -11 UNP P49902 EXPRESSION TAG SEQADV 6FIR HIS A -10 UNP P49902 EXPRESSION TAG SEQADV 6FIR HIS A -9 UNP P49902 EXPRESSION TAG SEQADV 6FIR SER A -8 UNP P49902 EXPRESSION TAG SEQADV 6FIR SER A -7 UNP P49902 EXPRESSION TAG SEQADV 6FIR GLY A -6 UNP P49902 EXPRESSION TAG SEQADV 6FIR LEU A -5 UNP P49902 EXPRESSION TAG SEQADV 6FIR VAL A -4 UNP P49902 EXPRESSION TAG SEQADV 6FIR PRO A -3 UNP P49902 EXPRESSION TAG SEQADV 6FIR ARG A -2 UNP P49902 EXPRESSION TAG SEQADV 6FIR GLY A -1 UNP P49902 EXPRESSION TAG SEQADV 6FIR SER A 0 UNP P49902 EXPRESSION TAG SEQRES 1 A 555 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 555 LEU VAL PRO ARG GLY SER MET SER THR SER TRP SER ASP SEQRES 3 A 555 ARG LEU GLN ASN ALA ALA ASP MET PRO ALA ASN MET ASP SEQRES 4 A 555 LYS HIS ALA LEU LYS LYS TYR ARG ARG GLU ALA TYR HIS SEQRES 5 A 555 ARG VAL PHE VAL ASN ARG SER LEU ALA MET GLU LYS ILE SEQRES 6 A 555 LYS CYS PHE GLY PHE ASP MET ASP TYR THR LEU ALA VAL SEQRES 7 A 555 TYR LYS SER PRO GLU TYR GLU SER LEU GLY PHE GLU LEU SEQRES 8 A 555 THR VAL GLU ARG LEU VAL SER ILE GLY TYR PRO GLN GLU SEQRES 9 A 555 LEU LEU SER PHE ALA TYR ASP SER THR PHE PRO THR ARG SEQRES 10 A 555 GLY LEU VAL PHE ASP THR LEU TYR GLY ASN LEU LEU LYS SEQRES 11 A 555 VAL ASP ALA TYR GLY ASN LEU LEU VAL CYS ALA HIS GLY SEQRES 12 A 555 PHE ASN PHE ILE ARG GLY PRO GLU THR ARG GLU GLN TYR SEQRES 13 A 555 PRO ASN LYS PHE ILE GLN ARG ASP ASP THR GLU ARG PHE SEQRES 14 A 555 TYR ILE LEU ASN THR LEU PHE ASN LEU PRO GLU THR TYR SEQRES 15 A 555 LEU LEU ALA CYS LEU VAL ASP PHE PHE THR ASN CYS PRO SEQRES 16 A 555 ARG TYR THR SER CYS GLU THR GLY PHE LYS ASP GLY ASP SEQRES 17 A 555 LEU PHE MET SER TYR ARG SER MET PHE GLN ASP VAL ARG SEQRES 18 A 555 ASP ALA VAL ASP TRP VAL HIS TYR LYS GLY SER LEU LYS SEQRES 19 A 555 GLU LYS THR VAL GLU ASN LEU GLU LYS TYR VAL VAL LYS SEQRES 20 A 555 ASP GLY LYS LEU PRO LEU LEU LEU SER ARG MET LYS GLU SEQRES 21 A 555 VAL GLY LYS VAL PHE LEU ALA THR ASN SER ASP TYR LYS SEQRES 22 A 555 TYR THR ASP LYS ILE MET THR TYR LEU PHE ASP PHE PRO SEQRES 23 A 555 HIS GLY PRO LYS PRO GLY SER SER HIS ARG PRO TRP GLN SEQRES 24 A 555 SER TYR PHE ASP LEU ILE LEU VAL ASP ALA ARG LYS PRO SEQRES 25 A 555 LEU PHE PHE GLY GLU GLY THR VAL LEU ARG GLN VAL ASP SEQRES 26 A 555 THR LYS THR GLY LYS LEU LYS ILE GLY THR TYR THR GLY SEQRES 27 A 555 PRO LEU GLN HIS GLY ILE VAL TYR SER GLY GLY SER SER SEQRES 28 A 555 ASP THR ILE CYS ASP LEU LEU GLY ALA LYS GLY LYS ASP SEQRES 29 A 555 ILE LEU TYR ILE GLY ASP HIS ILE PHE GLY ASP ILE LEU SEQRES 30 A 555 LYS SER LYS LYS ARG GLN GLY TRP ARG THR PHE LEU VAL SEQRES 31 A 555 ILE PRO GLU LEU ALA GLN GLU LEU HIS VAL TRP THR ASP SEQRES 32 A 555 LYS SER SER LEU PHE GLU GLU LEU GLN SER LEU ASP ILE SEQRES 33 A 555 PHE LEU ALA GLU LEU TYR LYS HIS LEU ASP SER SER SER SEQRES 34 A 555 ASN GLU ARG PRO ASP ILE SER SER ILE GLN ARG ARG ILE SEQRES 35 A 555 LYS LYS VAL THR HIS ASP MET ASP MET CYS TYR GLY MET SEQRES 36 A 555 MET GLY SER LEU PHE ARG SER GLY SER ARG GLN THR LEU SEQRES 37 A 555 PHE ALA SER GLN VAL MET ARG TYR ALA ASP LEU TYR ALA SEQRES 38 A 555 ALA SER PHE ILE ASN LEU LEU TYR TYR PRO PHE SER TYR SEQRES 39 A 555 LEU PHE ARG ALA ALA HIS VAL LEU MET PRO HIS GLU SER SEQRES 40 A 555 THR VAL GLU HIS THR HIS VAL ASP ILE ASN GLU MET GLU SEQRES 41 A 555 SER PRO LEU ALA THR ARG ASN ARG THR SER VAL ASP PHE SEQRES 42 A 555 LYS ASP THR ASP TYR LYS ARG HIS GLN LEU THR ARG SER SEQRES 43 A 555 ILE SER GLU ILE LYS PRO PRO ASN LEU HET MG A 601 1 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HET GOL A 608 6 HET GOL A 609 6 HET GOL A 610 6 HET GOL A 611 6 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 GOL 7(C3 H8 O3) FORMUL 13 HOH *77(H2 O) HELIX 1 AA1 SER A 4 ASP A 14 1 11 HELIX 2 AA2 ASP A 20 GLU A 30 1 11 HELIX 3 AA3 ALA A 31 ARG A 34 5 4 HELIX 4 AA4 GLU A 44 ILE A 46 5 3 HELIX 5 AA5 PRO A 63 ILE A 80 1 18 HELIX 6 AA6 PRO A 83 PHE A 89 5 7 HELIX 7 AA7 ARG A 129 TYR A 137 1 9 HELIX 8 AA8 PRO A 138 PHE A 141 5 4 HELIX 9 AA9 THR A 155 PHE A 157 5 3 HELIX 10 AB1 ASN A 158 CYS A 175 1 18 HELIX 11 AB2 TYR A 194 LYS A 211 1 18 HELIX 12 AB3 SER A 213 GLU A 220 1 8 HELIX 13 AB4 ASN A 221 VAL A 226 1 6 HELIX 14 AB5 LYS A 231 GLY A 243 1 13 HELIX 15 AB6 ASP A 252 PHE A 264 1 13 HELIX 16 AB7 PRO A 278 PHE A 283 5 6 HELIX 17 AB8 PRO A 293 GLY A 297 5 5 HELIX 18 AB9 SER A 331 GLY A 340 1 10 HELIX 19 AC1 LYS A 342 LYS A 344 5 3 HELIX 20 AC2 ILE A 357 GLY A 365 1 9 HELIX 21 AC3 GLU A 374 LYS A 385 1 12 HELIX 22 AC4 LYS A 385 LEU A 402 1 18 HELIX 23 AC5 ILE A 416 CYS A 433 1 18 HELIX 24 AC6 THR A 448 ALA A 458 1 11 HELIX 25 AC7 SER A 464 TYR A 471 5 8 HELIX 26 AC8 MET A 484 THR A 489 1 6 SHEET 1 AA1 9 PHE A 36 VAL A 37 0 SHEET 2 AA1 9 LEU A 460 ALA A 462 -1 O TYR A 461 N PHE A 36 SHEET 3 AA1 9 ARG A 367 VAL A 371 1 N LEU A 370 O LEU A 460 SHEET 4 AA1 9 ILE A 346 GLY A 350 1 N TYR A 348 O ARG A 367 SHEET 5 AA1 9 CYS A 48 PHE A 51 1 N GLY A 50 O ILE A 349 SHEET 6 AA1 9 LYS A 244 ALA A 248 1 O LYS A 244 N PHE A 49 SHEET 7 AA1 9 LEU A 285 VAL A 288 1 O LEU A 285 N LEU A 247 SHEET 8 AA1 9 VAL A 326 GLY A 329 1 O TYR A 327 N VAL A 288 SHEET 9 AA1 9 LEU A 302 GLN A 304 -1 N ARG A 303 O SER A 328 SHEET 1 AA2 2 LEU A 41 ALA A 42 0 SHEET 2 AA2 2 LEU A 476 PHE A 477 -1 O PHE A 477 N LEU A 41 SHEET 1 AA3 5 ASN A 126 PHE A 127 0 SHEET 2 AA3 5 LEU A 118 HIS A 123 -1 N HIS A 123 O ASN A 126 SHEET 3 AA3 5 ASN A 108 VAL A 112 -1 N LYS A 111 O LEU A 119 SHEET 4 AA3 5 LEU A 100 ASP A 103 -1 N VAL A 101 O LEU A 110 SHEET 5 AA3 5 PHE A 150 LEU A 153 -1 O LEU A 153 N LEU A 100 SHEET 1 AA4 3 THR A 179 CYS A 181 0 SHEET 2 AA4 3 GLY A 184 ASP A 187 -1 O GLY A 184 N CYS A 181 SHEET 3 AA4 3 LEU A 190 SER A 193 -1 O MET A 192 N PHE A 185 SHEET 1 AA5 2 ARG A 442 SER A 443 0 SHEET 2 AA5 2 ARG A 446 GLN A 447 -1 O ARG A 446 N SER A 443 LINK OD2 ASP A 52 MG MG A 601 1555 1555 2.10 LINK O ASP A 54 MG MG A 601 1555 1555 2.20 LINK OD1 ASP A 351 MG MG A 601 1555 1555 2.08 LINK MG MG A 601 O HOH A 702 1555 1555 2.24 LINK MG MG A 601 O HOH A 712 1555 1555 2.00 LINK MG MG A 601 O HOH A 722 1555 1555 2.19 CISPEP 1 SER A 62 PRO A 63 0 2.96 CISPEP 2 LYS A 292 PRO A 293 0 2.33 SITE 1 AC1 6 ASP A 52 ASP A 54 ASP A 351 HOH A 702 SITE 2 AC1 6 HOH A 712 HOH A 722 SITE 1 AC2 5 ASN A 250 HIS A 352 HOH A 702 HOH A 712 SITE 2 AC2 5 HOH A 722 SITE 1 AC3 4 ARG A 144 GLN A 453 ARG A 456 TYR A 457 SITE 1 AC4 4 GLY A 130 PRO A 131 ARG A 134 LYS A 140 SITE 1 AC5 4 PRO A 96 GLU A 374 GLU A 378 TYR A 434 SITE 1 AC6 8 PHE A 283 ASP A 284 ILE A 286 GLN A 322 SITE 2 AC6 8 HIS A 323 GLY A 324 ILE A 325 HOH A 741 SITE 1 AC7 4 LEU A 9 VAL A 59 ASP A 229 SER A 464 SITE 1 AC8 7 ASP A 252 TYR A 253 VAL A 288 ASP A 289 SITE 2 AC8 7 GLY A 310 LEU A 312 SER A 328 SITE 1 AC9 5 MET A 43 ARG A 238 LEU A 468 TYR A 471 SITE 2 AC9 5 PHE A 473 SITE 1 AD1 6 ARG A 34 VAL A 35 VAL A 37 TYR A 475 SITE 2 AD1 6 ARG A 478 HOH A 701 SITE 1 AD2 5 SER A 4 ASP A 7 SER A 62 PRO A 63 SITE 2 AD2 5 GLU A 64 CRYST1 90.930 127.680 130.690 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010997 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007652 0.00000