HEADER HYDROLASE 19-JAN-18 6FIU TITLE HUMAN CYTOSOLIC 5'-NUCLEOTIDASE II SOAKED WITH 10MM 2-(6-([1,1'- TITLE 2 BIPHENYL]-3-CARBOXAMIDO)-9H-PURIN-9-YL)ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC PURINE 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOSOLIC 5'-NUCLEOTIDASE II; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5C2, NT5B, NT5CP, PNT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.AGHAJARI,P.PREETI REVDAT 3 08-MAY-24 6FIU 1 REMARK REVDAT 2 06-MAR-19 6FIU 1 JRNL REVDAT 1 30-JAN-19 6FIU 0 JRNL AUTH R.GUILLON,R.RAHIMOVA,D.EGRON,S.ROUANET,C.DUMONTET, JRNL AUTH 2 N.AGHAJARI,L.P.JORDHEIM,L.CHALOIN,S.PEYROTTES JRNL TITL LEAD OPTIMIZATION AND BIOLOGICAL EVALUATION OF JRNL TITL 2 FRAGMENT-BASED CN-II INHIBITORS. JRNL REF EUR J MED CHEM V. 168 28 2019 JRNL REFN ISSN 1768-3254 JRNL PMID 30798051 JRNL DOI 10.1016/J.EJMECH.2019.02.040 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 23841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7780 - 4.9984 0.90 2951 163 0.1819 0.2172 REMARK 3 2 4.9984 - 3.9680 0.93 2946 148 0.1458 0.1949 REMARK 3 3 3.9680 - 3.4666 0.93 2960 123 0.1512 0.2280 REMARK 3 4 3.4666 - 3.1497 0.94 2900 166 0.1740 0.2507 REMARK 3 5 3.1497 - 2.9239 0.94 2925 148 0.1976 0.2835 REMARK 3 6 2.9239 - 2.7516 0.95 2938 180 0.2063 0.2855 REMARK 3 7 2.7516 - 2.6138 0.89 2764 145 0.2249 0.3055 REMARK 3 8 2.6138 - 2.5000 0.73 2280 104 0.2562 0.3274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3991 REMARK 3 ANGLE : 0.912 5382 REMARK 3 CHIRALITY : 0.049 566 REMARK 3 PLANARITY : 0.005 674 REMARK 3 DIHEDRAL : 6.723 2338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.0590 24.5632 45.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.3343 T22: 0.3000 REMARK 3 T33: 0.2978 T12: -0.0089 REMARK 3 T13: 0.0037 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.2172 L22: 0.1889 REMARK 3 L33: 0.1348 L12: 0.0149 REMARK 3 L13: -0.0536 L23: 0.0809 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0206 S13: 0.0063 REMARK 3 S21: -0.0898 S22: -0.0210 S23: 0.0089 REMARK 3 S31: -0.0576 S32: 0.0124 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24058 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGSO4, TRIS AND LIGAND, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.34500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.09000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.82000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.34500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.09000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.82000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.34500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.09000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.82000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.34500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.09000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 402 REMARK 465 TYR A 403 REMARK 465 LYS A 404 REMARK 465 HIS A 405 REMARK 465 LEU A 406 REMARK 465 ASP A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 GLU A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 ASP A 415 REMARK 465 THR A 489 REMARK 465 VAL A 490 REMARK 465 GLU A 491 REMARK 465 HIS A 492 REMARK 465 THR A 493 REMARK 465 HIS A 494 REMARK 465 VAL A 495 REMARK 465 ASP A 496 REMARK 465 ILE A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 MET A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ASN A 508 REMARK 465 ARG A 509 REMARK 465 THR A 510 REMARK 465 SER A 511 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 PHE A 514 REMARK 465 LYS A 515 REMARK 465 ASP A 516 REMARK 465 THR A 517 REMARK 465 ASP A 518 REMARK 465 TYR A 519 REMARK 465 LYS A 520 REMARK 465 ARG A 521 REMARK 465 HIS A 522 REMARK 465 GLN A 523 REMARK 465 LEU A 524 REMARK 465 THR A 525 REMARK 465 ARG A 526 REMARK 465 SER A 527 REMARK 465 ILE A 528 REMARK 465 SER A 529 REMARK 465 GLU A 530 REMARK 465 ILE A 531 REMARK 465 LYS A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 LEU A 536 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 ILE A 416 CG1 CG2 CD1 REMARK 470 SER A 417 OG REMARK 470 SER A 418 OG REMARK 470 ILE A 419 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N TYR A 253 O1 GOL A 612 1.30 REMARK 500 O ASP A 289 O HOH A 701 2.09 REMARK 500 NH2 ARG A 291 O HOH A 701 2.10 REMARK 500 NZ LYS A 21 O HOH A 702 2.15 REMARK 500 O2 GOL A 612 O HOH A 703 2.17 REMARK 500 O HOH A 714 O HOH A 808 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 53 -71.02 -105.78 REMARK 500 THR A 56 -78.35 -119.65 REMARK 500 PHE A 95 -62.32 -91.39 REMARK 500 ASP A 146 75.84 -69.42 REMARK 500 ASN A 221 57.48 -149.33 REMARK 500 ILE A 357 -61.96 -104.03 REMARK 500 PHE A 398 -31.90 -38.54 REMARK 500 LEU A 399 -86.27 -56.48 REMARK 500 ALA A 400 -113.80 53.17 REMARK 500 GLU A 487 38.10 -88.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 442 SER A 443 149.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 842 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 614 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD2 REMARK 620 2 ASP A 54 O 83.0 REMARK 620 3 ASP A 351 OD2 79.0 83.3 REMARK 620 4 HOH A 723 O 84.3 167.2 95.4 REMARK 620 5 HOH A 732 O 175.9 96.4 104.9 96.3 REMARK 620 6 HOH A 753 O 86.2 88.2 163.7 89.8 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 614 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H4B RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT LIGAND REMARK 900 RELATED ID: 6FIR RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT LIGAND REMARK 900 RELATED ID: 6FIS RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT LIGAND REMARK 900 RELATED ID: 5CQZ RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT CRYSTALLIZATION CONDITION REMARK 900 RELATED ID: 5CR7 RELATED DB: PDB REMARK 900 SAME PROTEIN DIFFERENT CRYSTALLIZATION CONDITION DBREF 6FIU A 1 536 UNP P49902 5NTC_HUMAN 1 536 SEQRES 1 A 536 MET SER THR SER TRP SER ASP ARG LEU GLN ASN ALA ALA SEQRES 2 A 536 ASP MET PRO ALA ASN MET ASP LYS HIS ALA LEU LYS LYS SEQRES 3 A 536 TYR ARG ARG GLU ALA TYR HIS ARG VAL PHE VAL ASN ARG SEQRES 4 A 536 SER LEU ALA MET GLU LYS ILE LYS CYS PHE GLY PHE ASP SEQRES 5 A 536 MET ASP TYR THR LEU ALA VAL TYR LYS SER PRO GLU TYR SEQRES 6 A 536 GLU SER LEU GLY PHE GLU LEU THR VAL GLU ARG LEU VAL SEQRES 7 A 536 SER ILE GLY TYR PRO GLN GLU LEU LEU SER PHE ALA TYR SEQRES 8 A 536 ASP SER THR PHE PRO THR ARG GLY LEU VAL PHE ASP THR SEQRES 9 A 536 LEU TYR GLY ASN LEU LEU LYS VAL ASP ALA TYR GLY ASN SEQRES 10 A 536 LEU LEU VAL CYS ALA HIS GLY PHE ASN PHE ILE ARG GLY SEQRES 11 A 536 PRO GLU THR ARG GLU GLN TYR PRO ASN LYS PHE ILE GLN SEQRES 12 A 536 ARG ASP ASP THR GLU ARG PHE TYR ILE LEU ASN THR LEU SEQRES 13 A 536 PHE ASN LEU PRO GLU THR TYR LEU LEU ALA CYS LEU VAL SEQRES 14 A 536 ASP PHE PHE THR ASN CYS PRO ARG TYR THR SER CYS GLU SEQRES 15 A 536 THR GLY PHE LYS ASP GLY ASP LEU PHE MET SER TYR ARG SEQRES 16 A 536 SER MET PHE GLN ASP VAL ARG ASP ALA VAL ASP TRP VAL SEQRES 17 A 536 HIS TYR LYS GLY SER LEU LYS GLU LYS THR VAL GLU ASN SEQRES 18 A 536 LEU GLU LYS TYR VAL VAL LYS ASP GLY LYS LEU PRO LEU SEQRES 19 A 536 LEU LEU SER ARG MET LYS GLU VAL GLY LYS VAL PHE LEU SEQRES 20 A 536 ALA THR ASN SER ASP TYR LYS TYR THR ASP LYS ILE MET SEQRES 21 A 536 THR TYR LEU PHE ASP PHE PRO HIS GLY PRO LYS PRO GLY SEQRES 22 A 536 SER SER HIS ARG PRO TRP GLN SER TYR PHE ASP LEU ILE SEQRES 23 A 536 LEU VAL ASP ALA ARG LYS PRO LEU PHE PHE GLY GLU GLY SEQRES 24 A 536 THR VAL LEU ARG GLN VAL ASP THR LYS THR GLY LYS LEU SEQRES 25 A 536 LYS ILE GLY THR TYR THR GLY PRO LEU GLN HIS GLY ILE SEQRES 26 A 536 VAL TYR SER GLY GLY SER SER ASP THR ILE CYS ASP LEU SEQRES 27 A 536 LEU GLY ALA LYS GLY LYS ASP ILE LEU TYR ILE GLY ASP SEQRES 28 A 536 HIS ILE PHE GLY ASP ILE LEU LYS SER LYS LYS ARG GLN SEQRES 29 A 536 GLY TRP ARG THR PHE LEU VAL ILE PRO GLU LEU ALA GLN SEQRES 30 A 536 GLU LEU HIS VAL TRP THR ASP LYS SER SER LEU PHE GLU SEQRES 31 A 536 GLU LEU GLN SER LEU ASP ILE PHE LEU ALA GLU LEU TYR SEQRES 32 A 536 LYS HIS LEU ASP SER SER SER ASN GLU ARG PRO ASP ILE SEQRES 33 A 536 SER SER ILE GLN ARG ARG ILE LYS LYS VAL THR HIS ASP SEQRES 34 A 536 MET ASP MET CYS TYR GLY MET MET GLY SER LEU PHE ARG SEQRES 35 A 536 SER GLY SER ARG GLN THR LEU PHE ALA SER GLN VAL MET SEQRES 36 A 536 ARG TYR ALA ASP LEU TYR ALA ALA SER PHE ILE ASN LEU SEQRES 37 A 536 LEU TYR TYR PRO PHE SER TYR LEU PHE ARG ALA ALA HIS SEQRES 38 A 536 VAL LEU MET PRO HIS GLU SER THR VAL GLU HIS THR HIS SEQRES 39 A 536 VAL ASP ILE ASN GLU MET GLU SER PRO LEU ALA THR ARG SEQRES 40 A 536 ASN ARG THR SER VAL ASP PHE LYS ASP THR ASP TYR LYS SEQRES 41 A 536 ARG HIS GLN LEU THR ARG SER ILE SER GLU ILE LYS PRO SEQRES 42 A 536 PRO ASN LEU HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET GOL A 608 6 HET GOL A 609 6 HET GOL A 610 6 HET GOL A 611 6 HET GOL A 612 6 HET GOL A 613 6 HET MG A 614 1 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 GOL 6(C3 H8 O3) FORMUL 15 MG MG 2+ FORMUL 16 HOH *142(H2 O) HELIX 1 AA1 SER A 4 ASP A 14 1 11 HELIX 2 AA2 ASP A 20 ARG A 29 1 10 HELIX 3 AA3 GLU A 30 ARG A 34 5 5 HELIX 4 AA4 GLU A 44 ILE A 46 5 3 HELIX 5 AA5 PRO A 63 ILE A 80 1 18 HELIX 6 AA6 PRO A 83 PHE A 89 5 7 HELIX 7 AA7 ARG A 129 ARG A 134 1 6 HELIX 8 AA8 THR A 155 PHE A 157 5 3 HELIX 9 AA9 ASN A 158 CYS A 175 1 18 HELIX 10 AB1 TYR A 194 LYS A 211 1 18 HELIX 11 AB2 SER A 213 GLU A 220 1 8 HELIX 12 AB3 ASN A 221 VAL A 226 1 6 HELIX 13 AB4 LYS A 231 GLY A 243 1 13 HELIX 14 AB5 ASP A 252 PHE A 264 1 13 HELIX 15 AB6 PRO A 278 PHE A 283 5 6 HELIX 16 AB7 PRO A 293 GLY A 297 5 5 HELIX 17 AB8 SER A 331 GLY A 340 1 10 HELIX 18 AB9 LYS A 342 LYS A 344 5 3 HELIX 19 AC1 ILE A 357 GLY A 365 1 9 HELIX 20 AC2 GLU A 374 LYS A 385 1 12 HELIX 21 AC3 SER A 386 ALA A 400 1 15 HELIX 22 AC4 SER A 418 CYS A 433 1 16 HELIX 23 AC5 THR A 448 ALA A 458 1 11 HELIX 24 AC6 SER A 464 TYR A 471 5 8 HELIX 25 AC7 MET A 484 SER A 488 5 5 SHEET 1 AA1 9 PHE A 36 VAL A 37 0 SHEET 2 AA1 9 LEU A 460 ALA A 462 -1 O TYR A 461 N PHE A 36 SHEET 3 AA1 9 ARG A 367 VAL A 371 1 N LEU A 370 O LEU A 460 SHEET 4 AA1 9 ILE A 346 GLY A 350 1 N GLY A 350 O PHE A 369 SHEET 5 AA1 9 CYS A 48 PHE A 51 1 N GLY A 50 O ILE A 349 SHEET 6 AA1 9 LYS A 244 ALA A 248 1 O LYS A 244 N PHE A 49 SHEET 7 AA1 9 LEU A 285 VAL A 288 1 O LEU A 285 N LEU A 247 SHEET 8 AA1 9 VAL A 326 GLY A 329 1 O TYR A 327 N VAL A 288 SHEET 9 AA1 9 LEU A 302 GLN A 304 -1 N ARG A 303 O SER A 328 SHEET 1 AA2 2 LEU A 41 ALA A 42 0 SHEET 2 AA2 2 LEU A 476 PHE A 477 -1 O PHE A 477 N LEU A 41 SHEET 1 AA3 5 ASN A 126 PHE A 127 0 SHEET 2 AA3 5 LEU A 118 HIS A 123 -1 N HIS A 123 O ASN A 126 SHEET 3 AA3 5 ASN A 108 VAL A 112 -1 N LYS A 111 O LEU A 119 SHEET 4 AA3 5 LEU A 100 ASP A 103 -1 N VAL A 101 O LEU A 110 SHEET 5 AA3 5 PHE A 150 LEU A 153 -1 O LEU A 153 N LEU A 100 SHEET 1 AA4 3 THR A 179 SER A 180 0 SHEET 2 AA4 3 GLY A 184 ASP A 187 -1 O LYS A 186 N THR A 179 SHEET 3 AA4 3 LEU A 190 SER A 193 -1 O MET A 192 N PHE A 185 SHEET 1 AA5 2 ARG A 442 SER A 443 0 SHEET 2 AA5 2 ARG A 446 GLN A 447 -1 O ARG A 446 N SER A 443 LINK OD2 ASP A 52 MG MG A 614 1555 1555 2.20 LINK O ASP A 54 MG MG A 614 1555 1555 2.15 LINK OD2 ASP A 351 MG MG A 614 1555 1555 2.05 LINK MG MG A 614 O HOH A 723 1555 1555 2.20 LINK MG MG A 614 O HOH A 732 1555 1555 2.12 LINK MG MG A 614 O HOH A 753 1555 1555 2.15 CISPEP 1 SER A 62 PRO A 63 0 4.11 CISPEP 2 LYS A 292 PRO A 293 0 0.86 SITE 1 AC1 5 ASN A 250 HOH A 715 HOH A 723 HOH A 744 SITE 2 AC1 5 HOH A 753 SITE 1 AC2 2 ASP A 187 GLY A 188 SITE 1 AC3 4 LYS A 25 ARG A 28 ARG A 29 TYR A 475 SITE 1 AC4 5 GLY A 130 PRO A 131 ARG A 134 LYS A 140 SITE 2 AC4 5 SO4 A 607 SITE 1 AC5 4 ARG A 144 GLN A 453 ARG A 456 TYR A 457 SITE 1 AC6 3 ASN A 117 LYS A 344 ARG A 446 SITE 1 AC7 6 ARG A 129 GLY A 130 PRO A 131 LYS A 140 SITE 2 AC7 6 LYS A 424 SO4 A 604 SITE 1 AC8 3 ARG A 76 TRP A 207 LYS A 211 SITE 1 AC9 5 PRO A 96 GLU A 378 TYR A 434 LEU A 440 SITE 2 AC9 5 HOH A 741 SITE 1 AD1 5 ASP A 257 THR A 261 TRP A 279 GLN A 280 SITE 2 AD1 5 HOH A 704 SITE 1 AD2 8 ARG A 39 ASN A 117 LYS A 344 LYS A 361 SITE 2 AD2 8 ARG A 367 ARG A 446 ASP A 459 HOH A 835 SITE 1 AD3 7 ASP A 252 TYR A 253 VAL A 288 ASP A 289 SITE 2 AD3 7 GLY A 310 LEU A 312 HOH A 703 SITE 1 AD4 9 PHE A 283 ASP A 284 ILE A 286 LEU A 321 SITE 2 AD4 9 GLN A 322 HIS A 323 GLY A 324 ILE A 325 SITE 3 AD4 9 HOH A 713 SITE 1 AD5 6 ASP A 52 ASP A 54 ASP A 351 HOH A 723 SITE 2 AD5 6 HOH A 732 HOH A 753 CRYST1 90.690 128.180 129.640 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007714 0.00000