HEADER FLAVOPROTEIN 22-JAN-18 6FJH TITLE CRYSTAL STRUCTURE OF THE SELENIATED LKCE FROM STREPTOMYCES ROCHEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: LKCE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ROCHEI SUBSP. VOLUBILIS; SOURCE 3 ORGANISM_TAXID: 885435; SOURCE 4 GENE: LKCE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AMINE OXYDASE, CYCLASE, POST-PKS ENZYME, TAYLORING ENZYME, KEYWDS 2 FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.DORIVAL,F.RISSER,C.JACOB,S.COLLIN,G.DRAGER,A.KIRSCHNING,C.PARIS, AUTHOR 2 B.CHAGOT,A.GRUEZ,K.J.WEISSMAN REVDAT 3 23-OCT-24 6FJH 1 LINK REVDAT 2 10-OCT-18 6FJH 1 JRNL REVDAT 1 19-SEP-18 6FJH 0 JRNL AUTH J.DORIVAL,F.RISSER,C.JACOB,S.COLLIN,G.DRAGER,C.PARIS, JRNL AUTH 2 B.CHAGOT,A.KIRSCHNING,A.GRUEZ,K.J.WEISSMAN JRNL TITL INSIGHTS INTO A DUAL FUNCTION AMIDE OXIDASE/MACROCYCLASE JRNL TITL 2 FROM LANKACIDIN BIOSYNTHESIS. JRNL REF NAT COMMUN V. 9 3998 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30266997 JRNL DOI 10.1038/S41467-018-06323-W REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2857 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2250 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2714 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6807 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.83420 REMARK 3 B22 (A**2) : -1.83420 REMARK 3 B33 (A**2) : 3.66830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.431 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7118 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9673 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2412 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 174 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1120 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7118 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 861 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8018 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.82 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.32 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200007808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40627 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.585 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.01 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER 2.5.2, SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 3350, 200 MM AMMONIUM ACETATE, REMARK 280 100 MM BIS TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.26500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.65000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.63250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.65000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 115.89750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.65000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.63250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.65000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.65000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 115.89750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 134 REMARK 465 ASP A 135 REMARK 465 ASP A 136 REMARK 465 SER A 137 REMARK 465 TYR A 138 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 SER B 133 REMARK 465 GLY B 134 REMARK 465 ASP B 135 REMARK 465 ASP B 136 REMARK 465 THR B 267 REMARK 465 SER B 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 -52.25 71.84 REMARK 500 GLU A 64 -21.53 -151.32 REMARK 500 SER A 71 61.48 -117.93 REMARK 500 GLN A 140 51.98 -106.97 REMARK 500 ALA A 160 -60.95 -121.63 REMARK 500 CYS A 171 -32.09 -36.95 REMARK 500 GLU A 292 -4.10 -58.76 REMARK 500 ALA A 402 -72.72 -56.09 REMARK 500 ARG B 29 -53.20 72.45 REMARK 500 GLU B 64 -52.26 -129.59 REMARK 500 SER B 71 62.00 -117.84 REMARK 500 TYR B 138 4.53 59.61 REMARK 500 MSE B 141 161.31 -46.23 REMARK 500 ALA B 160 -60.84 -121.31 REMARK 500 TYR B 168 -149.07 -161.22 REMARK 500 SER B 169 0.14 59.29 REMARK 500 GLU B 292 -1.30 -53.33 REMARK 500 GLU B 313 94.36 53.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 777 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A 778 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A 779 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A 780 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A 781 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH A 782 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH A 783 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH A 784 DISTANCE = 9.77 ANGSTROMS REMARK 525 HOH A 785 DISTANCE = 15.06 ANGSTROMS REMARK 525 HOH B 797 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 798 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B 799 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH B 800 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH B 801 DISTANCE = 8.00 ANGSTROMS REMARK 525 HOH B 802 DISTANCE = 8.34 ANGSTROMS REMARK 525 HOH B 803 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH B 804 DISTANCE = 9.83 ANGSTROMS REMARK 525 HOH B 805 DISTANCE = 10.88 ANGSTROMS REMARK 525 HOH B 806 DISTANCE = 11.71 ANGSTROMS REMARK 525 HOH B 807 DISTANCE = 12.47 ANGSTROMS REMARK 525 HOH B 808 DISTANCE = 13.04 ANGSTROMS REMARK 525 HOH B 809 DISTANCE = 19.80 ANGSTROMS REMARK 525 HOH B 810 DISTANCE = 23.82 ANGSTROMS REMARK 525 HOH B 811 DISTANCE = 26.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 738 O REMARK 620 2 SER B 91 OG 111.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6F32 RELATED DB: PDB REMARK 900 NATIVE PROTEIN WITH SUBSTATE ANALOGUES REMARK 900 RELATED ID: 6F7V RELATED DB: PDB REMARK 900 LKCE E64Q MUTANT IN COMPLEX WITH NATURAL SUBSTRATE REMARK 900 RELATED ID: 6F7L RELATED DB: PDB REMARK 900 LKCE R326Q MUTANT IN COMPLEX WITH NATURAL SUBSTRATE DBREF 6FJH A 1 438 UNP G4V2H3 G4V2H3_STRRO 1 438 DBREF 6FJH B 1 438 UNP G4V2H3 G4V2H3_STRRO 1 438 SEQADV 6FJH GLY A -3 UNP G4V2H3 EXPRESSION TAG SEQADV 6FJH PRO A -2 UNP G4V2H3 EXPRESSION TAG SEQADV 6FJH GLY A -1 UNP G4V2H3 EXPRESSION TAG SEQADV 6FJH SER A 0 UNP G4V2H3 EXPRESSION TAG SEQADV 6FJH GLY B -3 UNP G4V2H3 EXPRESSION TAG SEQADV 6FJH PRO B -2 UNP G4V2H3 EXPRESSION TAG SEQADV 6FJH GLY B -1 UNP G4V2H3 EXPRESSION TAG SEQADV 6FJH SER B 0 UNP G4V2H3 EXPRESSION TAG SEQRES 1 A 442 GLY PRO GLY SER MSE THR VAL VAL GLU ALA LYS SER ARG SEQRES 2 A 442 ILE ALA VAL VAL GLY GLY GLY GLY SER GLY SER VAL ALA SEQRES 3 A 442 ALA TRP LEU LEU ALA ARG ARG HIS ASP VAL THR LEU PHE SEQRES 4 A 442 GLU ALA ASP GLU TYR LEU GLY GLY HIS ALA TYR SER HIS SEQRES 5 A 442 PRO VAL GLU THR ASP GLN GLY THR LEU HIS VAL ASP MSE SEQRES 6 A 442 GLY VAL GLU HIS PHE ASN GLU LYS LEU SER PRO ASN LEU SEQRES 7 A 442 PHE ARG LEU LEU THR ASP PHE GLY ILE GLY THR TYR VAL SEQRES 8 A 442 ALA PRO SER SER VAL HIS VAL ASP PHE PRO GLY GLU GLN SEQRES 9 A 442 GLN SER TRP ASN ASN LEU ASP PHE LEU GLY GLU LEU ARG SEQRES 10 A 442 GLU GLU LEU HIS GLU GLU PHE ASP ARG PHE HIS GLN GLU SEQRES 11 A 442 MSE ASN GLN LEU PRO THR SER GLY ASP ASP SER TYR LYS SEQRES 12 A 442 GLN MSE SER ILE GLY GLU TYR LEU ASP LYS HIS GLY TYR SEQRES 13 A 442 SER LYS SER PHE LYS TYR LYS ALA MSE ASN PRO ILE LEU SEQRES 14 A 442 SER ILE TYR SER GLY CYS HIS ALA PRO SER LEU ASP TYR SEQRES 15 A 442 ASN LEU MSE TYR VAL ALA LEU SER PHE SER MSE ASN LEU SEQRES 16 A 442 LEU SER PHE PHE SER ALA GLY TYR TRP ARG LYS ALA GLN SEQRES 17 A 442 GLY GLY ILE HIS SER TYR LEU ALA ARG ILE GLU SER ASP SEQRES 18 A 442 LEU GLY GLU ARG VAL ARG LEU ASN THR PRO VAL GLU ALA SEQRES 19 A 442 VAL VAL PRO THR GLN SER GLY VAL THR VAL LEU ALA GLY SEQRES 20 A 442 GLY GLN GLU HIS HIS PHE ASP GLN VAL VAL PHE ALA THR SEQRES 21 A 442 HIS ALA ASP VAL THR LEU ARG LEU LEU ARG THR SER ASP SEQRES 22 A 442 GLN GLN TYR ARG ASP LEU LEU GLY ASP PHE ALA TYR VAL SEQRES 23 A 442 PRO VAL GLU SER VAL LEU HIS GLN ASP GLU SER TRP LEU SEQRES 24 A 442 SER PRO ALA GLY GLY GLY ALA TYR CYS GLN PHE ARG MSE SEQRES 25 A 442 PRO GLU GLY PHE GLU LEU ALA ARG ALA GLU GLU GLN MSE SEQRES 26 A 442 GLY SER LEU THR ARG ASN CYS ASN VAL LEU HIS PRO TYR SEQRES 27 A 442 ARG LYS VAL SER SER PRO ILE LEU ILE THR PHE ASP PRO SEQRES 28 A 442 GLN GLU ASP VAL ASP PRO GLU ARG VAL ILE VAL ARG ARG SEQRES 29 A 442 GLU TRP LYS LEU PRO GLN LEU ARG PRO VAL ASP VAL ARG SEQRES 30 A 442 ARG LYS LYS ARG LEU HIS GLU ILE GLN GLY LEU ASN GLY SEQRES 31 A 442 LEU TRP PHE CYS GLY THR ASP THR SER VAL THR GLY HIS SEQRES 32 A 442 GLU GLY ALA ILE VAL SER GLY MSE VAL ILE ALA ASP ARG SEQRES 33 A 442 LEU GLY VAL PRO HIS PRO PHE PRO ASP ASP ALA PRO ALA SEQRES 34 A 442 ALA ALA GLN PHE ARG GLY ILE LYS GLU PHE MSE GLY VAL SEQRES 1 B 442 GLY PRO GLY SER MSE THR VAL VAL GLU ALA LYS SER ARG SEQRES 2 B 442 ILE ALA VAL VAL GLY GLY GLY GLY SER GLY SER VAL ALA SEQRES 3 B 442 ALA TRP LEU LEU ALA ARG ARG HIS ASP VAL THR LEU PHE SEQRES 4 B 442 GLU ALA ASP GLU TYR LEU GLY GLY HIS ALA TYR SER HIS SEQRES 5 B 442 PRO VAL GLU THR ASP GLN GLY THR LEU HIS VAL ASP MSE SEQRES 6 B 442 GLY VAL GLU HIS PHE ASN GLU LYS LEU SER PRO ASN LEU SEQRES 7 B 442 PHE ARG LEU LEU THR ASP PHE GLY ILE GLY THR TYR VAL SEQRES 8 B 442 ALA PRO SER SER VAL HIS VAL ASP PHE PRO GLY GLU GLN SEQRES 9 B 442 GLN SER TRP ASN ASN LEU ASP PHE LEU GLY GLU LEU ARG SEQRES 10 B 442 GLU GLU LEU HIS GLU GLU PHE ASP ARG PHE HIS GLN GLU SEQRES 11 B 442 MSE ASN GLN LEU PRO THR SER GLY ASP ASP SER TYR LYS SEQRES 12 B 442 GLN MSE SER ILE GLY GLU TYR LEU ASP LYS HIS GLY TYR SEQRES 13 B 442 SER LYS SER PHE LYS TYR LYS ALA MSE ASN PRO ILE LEU SEQRES 14 B 442 SER ILE TYR SER GLY CYS HIS ALA PRO SER LEU ASP TYR SEQRES 15 B 442 ASN LEU MSE TYR VAL ALA LEU SER PHE SER MSE ASN LEU SEQRES 16 B 442 LEU SER PHE PHE SER ALA GLY TYR TRP ARG LYS ALA GLN SEQRES 17 B 442 GLY GLY ILE HIS SER TYR LEU ALA ARG ILE GLU SER ASP SEQRES 18 B 442 LEU GLY GLU ARG VAL ARG LEU ASN THR PRO VAL GLU ALA SEQRES 19 B 442 VAL VAL PRO THR GLN SER GLY VAL THR VAL LEU ALA GLY SEQRES 20 B 442 GLY GLN GLU HIS HIS PHE ASP GLN VAL VAL PHE ALA THR SEQRES 21 B 442 HIS ALA ASP VAL THR LEU ARG LEU LEU ARG THR SER ASP SEQRES 22 B 442 GLN GLN TYR ARG ASP LEU LEU GLY ASP PHE ALA TYR VAL SEQRES 23 B 442 PRO VAL GLU SER VAL LEU HIS GLN ASP GLU SER TRP LEU SEQRES 24 B 442 SER PRO ALA GLY GLY GLY ALA TYR CYS GLN PHE ARG MSE SEQRES 25 B 442 PRO GLU GLY PHE GLU LEU ALA ARG ALA GLU GLU GLN MSE SEQRES 26 B 442 GLY SER LEU THR ARG ASN CYS ASN VAL LEU HIS PRO TYR SEQRES 27 B 442 ARG LYS VAL SER SER PRO ILE LEU ILE THR PHE ASP PRO SEQRES 28 B 442 GLN GLU ASP VAL ASP PRO GLU ARG VAL ILE VAL ARG ARG SEQRES 29 B 442 GLU TRP LYS LEU PRO GLN LEU ARG PRO VAL ASP VAL ARG SEQRES 30 B 442 ARG LYS LYS ARG LEU HIS GLU ILE GLN GLY LEU ASN GLY SEQRES 31 B 442 LEU TRP PHE CYS GLY THR ASP THR SER VAL THR GLY HIS SEQRES 32 B 442 GLU GLY ALA ILE VAL SER GLY MSE VAL ILE ALA ASP ARG SEQRES 33 B 442 LEU GLY VAL PRO HIS PRO PHE PRO ASP ASP ALA PRO ALA SEQRES 34 B 442 ALA ALA GLN PHE ARG GLY ILE LYS GLU PHE MSE GLY VAL MODRES 6FJH MSE A 61 MET MODIFIED RESIDUE MODRES 6FJH MSE A 127 MET MODIFIED RESIDUE MODRES 6FJH MSE A 141 MET MODIFIED RESIDUE MODRES 6FJH MSE A 161 MET MODIFIED RESIDUE MODRES 6FJH MSE A 181 MET MODIFIED RESIDUE MODRES 6FJH MSE A 189 MET MODIFIED RESIDUE MODRES 6FJH MSE A 308 MET MODIFIED RESIDUE MODRES 6FJH MSE A 321 MET MODIFIED RESIDUE MODRES 6FJH MSE A 407 MET MODIFIED RESIDUE MODRES 6FJH MSE A 436 MET MODIFIED RESIDUE MODRES 6FJH MSE B 61 MET MODIFIED RESIDUE MODRES 6FJH MSE B 127 MET MODIFIED RESIDUE MODRES 6FJH MSE B 141 MET MODIFIED RESIDUE MODRES 6FJH MSE B 161 MET MODIFIED RESIDUE MODRES 6FJH MSE B 181 MET MODIFIED RESIDUE MODRES 6FJH MSE B 189 MET MODIFIED RESIDUE MODRES 6FJH MSE B 308 MET MODIFIED RESIDUE MODRES 6FJH MSE B 321 MET MODIFIED RESIDUE MODRES 6FJH MSE B 407 MET MODIFIED RESIDUE MODRES 6FJH MSE B 436 MET MODIFIED RESIDUE HET MSE A 61 8 HET MSE A 127 8 HET MSE A 141 8 HET MSE A 161 8 HET MSE A 181 8 HET MSE A 189 8 HET MSE A 308 8 HET MSE A 321 8 HET MSE A 407 8 HET MSE A 436 8 HET MSE B 61 8 HET MSE B 127 8 HET MSE B 141 8 HET MSE B 161 8 HET MSE B 181 8 HET MSE B 189 8 HET MSE B 308 8 HET MSE B 321 8 HET MSE B 407 8 HET MSE B 436 8 HET FAD A 601 53 HET OXY A 602 2 HET NA A 603 1 HET FAD B 601 53 HET OXY B 602 2 HET NA B 603 1 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM OXY OXYGEN MOLECULE HETNAM NA SODIUM ION FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 OXY 2(O2) FORMUL 5 NA 2(NA 1+) FORMUL 9 HOH *196(H2 O) HELIX 1 AA1 GLY A 16 ALA A 27 1 12 HELIX 2 AA2 SER A 71 PHE A 81 1 11 HELIX 3 AA3 GLY A 110 LEU A 130 1 21 HELIX 4 AA4 SER A 142 HIS A 150 1 9 HELIX 5 AA5 SER A 153 ALA A 160 1 8 HELIX 6 AA6 ALA A 160 GLY A 170 1 11 HELIX 7 AA7 PRO A 174 TYR A 178 5 5 HELIX 8 AA8 ASN A 179 MSE A 189 1 11 HELIX 9 AA9 HIS A 208 GLY A 219 1 12 HELIX 10 AB1 HIS A 257 LEU A 265 1 9 HELIX 11 AB2 ASP A 269 GLY A 277 1 9 HELIX 12 AB3 ASP A 291 LEU A 295 5 5 HELIX 13 AB4 GLU A 313 ALA A 317 5 5 HELIX 14 AB5 ASN A 329 ARG A 335 5 7 HELIX 15 AB6 ASP A 352 GLU A 354 5 3 HELIX 16 AB7 ARG A 368 LEU A 378 1 11 HELIX 17 AB8 HIS A 379 ILE A 381 5 3 HELIX 18 AB9 THR A 397 LEU A 413 1 17 HELIX 19 AC1 ASP A 422 GLY A 437 1 16 HELIX 20 AC2 GLY B 16 ALA B 27 1 12 HELIX 21 AC3 SER B 71 PHE B 81 1 11 HELIX 22 AC4 GLY B 110 LEU B 130 1 21 HELIX 23 AC5 SER B 142 HIS B 150 1 9 HELIX 24 AC6 SER B 153 ALA B 160 1 8 HELIX 25 AC7 ALA B 160 SER B 166 1 7 HELIX 26 AC8 PRO B 174 TYR B 178 5 5 HELIX 27 AC9 ASN B 179 MSE B 189 1 11 HELIX 28 AD1 HIS B 208 GLY B 219 1 12 HELIX 29 AD2 HIS B 257 LEU B 265 1 9 HELIX 30 AD3 GLN B 270 GLY B 277 1 8 HELIX 31 AD4 ASP B 291 LEU B 295 5 5 HELIX 32 AD5 GLU B 313 ALA B 317 5 5 HELIX 33 AD6 ASN B 329 ARG B 335 5 7 HELIX 34 AD7 ARG B 368 LEU B 378 1 11 HELIX 35 AD8 HIS B 379 ILE B 381 5 3 HELIX 36 AD9 THR B 397 LEU B 413 1 17 HELIX 37 AE1 ASP B 422 GLY B 437 1 16 SHEET 1 AA1 5 VAL A 222 ARG A 223 0 SHEET 2 AA1 5 ASP A 31 PHE A 35 1 N LEU A 34 O ARG A 223 SHEET 3 AA1 5 ARG A 9 VAL A 13 1 N VAL A 12 O PHE A 35 SHEET 4 AA1 5 GLN A 251 PHE A 254 1 O VAL A 253 N VAL A 13 SHEET 5 AA1 5 LEU A 387 PHE A 389 1 O TRP A 388 N PHE A 254 SHEET 1 AA2 2 SER A 47 GLU A 51 0 SHEET 2 AA2 2 THR A 56 ASP A 60 -1 O LEU A 57 N VAL A 50 SHEET 1 AA3 2 THR A 85 VAL A 87 0 SHEET 2 AA3 2 ARG A 201 ALA A 203 -1 O LYS A 202 N TYR A 86 SHEET 1 AA4 7 SER A 102 ASN A 104 0 SHEET 2 AA4 7 VAL A 92 ASP A 95 -1 N VAL A 94 O TRP A 103 SHEET 3 AA4 7 CYS A 304 ARG A 307 1 O PHE A 306 N ASP A 95 SHEET 4 AA4 7 SER A 323 ASN A 327 -1 O THR A 325 N GLN A 305 SHEET 5 AA4 7 LEU A 342 PHE A 345 -1 O PHE A 345 N LEU A 324 SHEET 6 AA4 7 TYR A 281 HIS A 289 -1 N HIS A 289 O LEU A 342 SHEET 7 AA4 7 VAL A 356 PRO A 365 -1 O LEU A 364 N VAL A 282 SHEET 1 AA5 3 VAL A 228 PRO A 233 0 SHEET 2 AA5 3 VAL A 238 ALA A 242 -1 O THR A 239 N VAL A 232 SHEET 3 AA5 3 GLU A 246 PHE A 249 -1 O PHE A 249 N VAL A 238 SHEET 1 AA6 5 VAL B 222 ARG B 223 0 SHEET 2 AA6 5 ASP B 31 PHE B 35 1 N LEU B 34 O ARG B 223 SHEET 3 AA6 5 ARG B 9 VAL B 13 1 N VAL B 12 O PHE B 35 SHEET 4 AA6 5 GLN B 251 PHE B 254 1 O VAL B 253 N ALA B 11 SHEET 5 AA6 5 LEU B 387 PHE B 389 1 O TRP B 388 N PHE B 254 SHEET 1 AA7 2 SER B 47 THR B 52 0 SHEET 2 AA7 2 GLY B 55 ASP B 60 -1 O LEU B 57 N VAL B 50 SHEET 1 AA8 3 HIS B 65 PHE B 66 0 SHEET 2 AA8 3 ARG B 201 ALA B 203 -1 O ARG B 201 N PHE B 66 SHEET 3 AA8 3 THR B 85 VAL B 87 -1 N TYR B 86 O LYS B 202 SHEET 1 AA9 7 SER B 102 ASN B 104 0 SHEET 2 AA9 7 VAL B 92 ASP B 95 -1 N VAL B 94 O TRP B 103 SHEET 3 AA9 7 CYS B 304 ARG B 307 1 O PHE B 306 N ASP B 95 SHEET 4 AA9 7 SER B 323 ASN B 327 -1 O THR B 325 N GLN B 305 SHEET 5 AA9 7 LEU B 342 PHE B 345 -1 O PHE B 345 N LEU B 324 SHEET 6 AA9 7 TYR B 281 HIS B 289 -1 N HIS B 289 O LEU B 342 SHEET 7 AA9 7 VAL B 356 PRO B 365 -1 O LEU B 364 N VAL B 282 SHEET 1 AB1 3 VAL B 228 PRO B 233 0 SHEET 2 AB1 3 VAL B 238 ALA B 242 -1 O THR B 239 N VAL B 232 SHEET 3 AB1 3 GLU B 246 PHE B 249 -1 O PHE B 249 N VAL B 238 LINK C ASP A 60 N MSE A 61 1555 1555 1.35 LINK C MSE A 61 N GLY A 62 1555 1555 1.32 LINK C GLU A 126 N MSE A 127 1555 1555 1.35 LINK C MSE A 127 N ASN A 128 1555 1555 1.34 LINK C GLN A 140 N MSE A 141 1555 1555 1.35 LINK C MSE A 141 N SER A 142 1555 1555 1.33 LINK C ALA A 160 N MSE A 161 1555 1555 1.34 LINK C MSE A 161 N ASN A 162 1555 1555 1.32 LINK C LEU A 180 N MSE A 181 1555 1555 1.34 LINK C MSE A 181 N TYR A 182 1555 1555 1.33 LINK C SER A 188 N MSE A 189 1555 1555 1.34 LINK C MSE A 189 N ASN A 190 1555 1555 1.34 LINK C ARG A 307 N MSE A 308 1555 1555 1.33 LINK C MSE A 308 N PRO A 309 1555 1555 1.35 LINK C GLN A 320 N MSE A 321 1555 1555 1.35 LINK C MSE A 321 N GLY A 322 1555 1555 1.33 LINK C GLY A 406 N MSE A 407 1555 1555 1.33 LINK C MSE A 407 N VAL A 408 1555 1555 1.36 LINK C PHE A 435 N MSE A 436 1555 1555 1.34 LINK C MSE A 436 N GLY A 437 1555 1555 1.33 LINK C ASP B 60 N MSE B 61 1555 1555 1.34 LINK C MSE B 61 N GLY B 62 1555 1555 1.32 LINK C GLU B 126 N MSE B 127 1555 1555 1.34 LINK C MSE B 127 N ASN B 128 1555 1555 1.34 LINK C GLN B 140 N MSE B 141 1555 1555 1.36 LINK C MSE B 141 N SER B 142 1555 1555 1.34 LINK C ALA B 160 N MSE B 161 1555 1555 1.34 LINK C MSE B 161 N ASN B 162 1555 1555 1.33 LINK C LEU B 180 N MSE B 181 1555 1555 1.35 LINK C MSE B 181 N TYR B 182 1555 1555 1.33 LINK C SER B 188 N MSE B 189 1555 1555 1.34 LINK C MSE B 189 N ASN B 190 1555 1555 1.34 LINK C ARG B 307 N MSE B 308 1555 1555 1.34 LINK C MSE B 308 N PRO B 309 1555 1555 1.35 LINK C GLN B 320 N MSE B 321 1555 1555 1.34 LINK C MSE B 321 N GLY B 322 1555 1555 1.32 LINK C GLY B 406 N MSE B 407 1555 1555 1.34 LINK C MSE B 407 N VAL B 408 1555 1555 1.36 LINK C PHE B 435 N MSE B 436 1555 1555 1.33 LINK C MSE B 436 N GLY B 437 1555 1555 1.34 LINK NA NA A 603 O HOH B 744 1555 1555 2.74 LINK O HOH A 738 NA NA B 603 1555 1555 2.62 LINK OG SER B 91 NA NA B 603 1555 1555 3.07 SITE 1 AC1 26 GLY A 14 GLY A 16 GLY A 17 SER A 18 SITE 2 AC1 26 PHE A 35 GLU A 36 ALA A 37 GLY A 42 SITE 3 AC1 26 GLY A 43 HIS A 44 GLY A 62 VAL A 63 SITE 4 AC1 26 GLU A 64 HIS A 65 VAL A 228 ALA A 255 SITE 5 AC1 26 THR A 256 HIS A 257 VAL A 260 LEU A 364 SITE 6 AC1 26 GLY A 391 THR A 392 GLY A 398 HIS A 399 SITE 7 AC1 26 ALA A 402 HOH A 704 SITE 1 AC2 2 TYR A 168 THR A 397 SITE 1 AC3 2 SER A 91 HOH B 744 SITE 1 AC4 28 GLY B 14 GLY B 16 GLY B 17 SER B 18 SITE 2 AC4 28 PHE B 35 GLU B 36 ALA B 37 GLY B 42 SITE 3 AC4 28 GLY B 43 HIS B 44 GLY B 62 VAL B 63 SITE 4 AC4 28 GLU B 64 HIS B 65 VAL B 228 ALA B 255 SITE 5 AC4 28 THR B 256 HIS B 257 VAL B 260 LEU B 364 SITE 6 AC4 28 GLY B 391 THR B 392 GLY B 398 HIS B 399 SITE 7 AC4 28 ALA B 402 OXY B 602 HOH B 701 HOH B 705 SITE 1 AC5 2 FAD B 601 HOH B 730 SITE 1 AC6 2 HOH A 738 SER B 91 CRYST1 125.300 125.300 154.530 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006471 0.00000