HEADER VIRAL PROTEIN 22-JAN-18 6FJO TITLE ADENOVIRUS SPECIES 26 KNOB PROTEIN, VERY HIGH RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 26; SOURCE 3 ORGANISM_TAXID: 46928; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FIBER, FIBER-KNOB, TROPISM DETERMINANT, HIGH RESOLUTION, STRUCTURE KEYWDS 2 DETERMINATION. ADENOVIRUS, MASTADENOVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,A.L.PARKER,A.T.BAKER REVDAT 6 17-JAN-24 6FJO 1 JRNL REVDAT 5 25-SEP-19 6FJO 1 JRNL REVDAT 4 18-SEP-19 6FJO 1 JRNL REVDAT 3 01-MAY-19 6FJO 1 JRNL REVDAT 2 13-FEB-19 6FJO 1 JRNL REMARK REVDAT 1 06-FEB-19 6FJO 0 JRNL AUTH A.T.BAKER,R.M.MUNDY,J.A.DAVIES,P.J.RIZKALLAH,A.L.PARKER JRNL TITL HUMAN ADENOVIRUS TYPE 26 USES SIALIC ACID-BEARING GLYCANS AS JRNL TITL 2 A PRIMARY CELL ENTRY RECEPTOR. JRNL REF SCI ADV V. 5 X3567 2019 JRNL REFN ESSN 2375-2548 JRNL PMID 31517055 JRNL DOI 10.1126/SCIADV.AAX3567 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.T.BAKER,A.GREENSHIELDS-WATSON,L.COUGHLAN,J.A.DAVIES, REMARK 1 AUTH 2 H.UUSI-KERTTULA,D.K.COLE,P.J.RIZKALLAH,A.L.PARKER REMARK 1 TITL DIVERSITY WITHIN THE ADENOVIRUS FIBER KNOB HYPERVARIABLE REMARK 1 TITL 2 LOOPS INFLUENCES PRIMARY RECEPTOR INTERACTIONS. REMARK 1 REF BIORXIV 2019 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/406819 REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 68283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3558 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 264 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.185 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1635 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1453 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2246 ; 2.080 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3412 ; 1.096 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 7.101 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;36.542 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;13.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;23.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1859 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 325 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 808 ; 1.149 ; 1.157 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 807 ; 1.147 ; 1.155 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1031 ; 1.981 ; 1.733 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1032 ; 1.982 ; 1.737 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 827 ; 1.453 ; 1.334 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 827 ; 1.450 ; 1.334 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1216 ; 2.208 ; 1.936 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1870 ; 5.654 ;15.272 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1837 ; 5.516 ;14.694 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2697 -1.2720 19.3226 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0144 REMARK 3 T33: 0.0171 T12: -0.0063 REMARK 3 T13: 0.0140 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.7594 L22: 2.5097 REMARK 3 L33: 1.2125 L12: -0.1493 REMARK 3 L13: -0.3384 L23: 0.3500 REMARK 3 S TENSOR REMARK 3 S11: -0.0649 S12: -0.0049 S13: -0.0822 REMARK 3 S21: 0.0957 S22: 0.0274 S23: 0.1070 REMARK 3 S31: 0.1306 S32: -0.1092 S33: 0.0375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71878 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 85.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.80 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.20 REMARK 200 R MERGE FOR SHELL (I) : 1.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KNB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PACT PREMIER A01: 0.1 M SPG BUFFER, REMARK 280 25% PEG 1500, PH 4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.88800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.88800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.88800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.88800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.88800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.88800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 42.88800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 42.88800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 42.88800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 42.88800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 42.88800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 42.88800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 42.88800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 42.88800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 42.88800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 42.88800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 42.88800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 42.88800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLN A 368 N GLU A 401 1.92 REMARK 500 OE1 GLU A 332 OE2 GLU A 334 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 644 O HOH A 644 5555 1.16 REMARK 500 O HOH A 588 O HOH A 626 9555 2.07 REMARK 500 OG1 THR A 188 OG SER A 218 9555 2.08 REMARK 500 O HOH A 511 O HOH A 511 5555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 265 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 192 156.67 75.16 REMARK 500 THR A 192 146.81 82.98 REMARK 500 LYS A 242 43.92 -92.99 REMARK 500 ASP A 243 106.69 -164.92 REMARK 500 ASP A 272 -127.25 54.59 REMARK 500 SER A 274 -147.85 -115.22 REMARK 500 TYR A 280 70.12 -117.51 REMARK 500 ALA A 283 30.05 -144.90 REMARK 500 ASN A 300 29.85 -149.37 REMARK 500 ALA A 301 -101.85 42.52 REMARK 500 ALA A 353 -11.00 79.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 671 DISTANCE = 6.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FJN RELATED DB: PDB REMARK 900 RELATED ID: 6FJP RELATED DB: PDB REMARK 900 RELATED ID: 6FJQ RELATED DB: PDB REMARK 900 RELATED ID: 6HCN RELATED DB: PDB DBREF 6FJO A 186 368 UNP A4ZKM1 A4ZKM1_9ADEN 186 368 SEQRES 1 A 183 ARG ARG THR LEU TRP THR THR PRO ASP THR SER PRO ASN SEQRES 2 A 183 CYS LYS MET SER THR GLU LYS ASP SER LYS LEU THR LEU SEQRES 3 A 183 THR LEU THR LYS CYS GLY SER GLN VAL LEU GLY ASN VAL SEQRES 4 A 183 SER LEU LEU ALA VAL THR GLY GLU TYR HIS GLN MET THR SEQRES 5 A 183 ALA THR THR LYS LYS ASP VAL LYS ILE SER LEU LEU PHE SEQRES 6 A 183 ASP GLU ASN GLY ILE LEU LEU PRO SER SER SER LEU SER SEQRES 7 A 183 LYS ASP TYR TRP ASN TYR ARG SER ASP ASP SER ILE VAL SEQRES 8 A 183 SER GLN LYS TYR ASN ASN ALA VAL PRO PHE MET PRO ASN SEQRES 9 A 183 LEU THR ALA TYR PRO LYS PRO SER ALA GLN ASN ALA LYS SEQRES 10 A 183 ASN TYR SER ARG THR LYS ILE ILE SER ASN VAL TYR LEU SEQRES 11 A 183 GLY ALA LEU THR TYR GLN PRO VAL ILE ILE THR ILE ALA SEQRES 12 A 183 PHE ASN GLN GLU THR GLU ASN GLY CYS ALA TYR SER ILE SEQRES 13 A 183 THR PHE THR PHE THR TRP GLN LYS ASP TYR SER ALA GLN SEQRES 14 A 183 GLN PHE ASP VAL THR SER PHE THR PHE SER TYR LEU THR SEQRES 15 A 183 GLN HET GLU A 401 10 HET SO4 A 402 5 HET GOL A 403 6 HETNAM GLU GLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLU C5 H9 N O4 FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *171(H2 O) HELIX 1 AA1 GLY A 231 GLN A 235 5 5 HELIX 2 AA2 SER A 263 TRP A 267 5 5 HELIX 3 AA3 ALA A 283 MET A 287 5 5 HELIX 4 AA4 TYR A 304 ARG A 306 5 3 HELIX 5 AA5 GLY A 316 LEU A 318 5 3 HELIX 6 AA6 THR A 333 CYS A 337 5 5 SHEET 1 AA1 6 SER A 274 ILE A 275 0 SHEET 2 AA1 6 ASN A 268 SER A 271 -1 N SER A 271 O SER A 274 SHEET 3 AA1 6 THR A 188 TRP A 190 -1 N TRP A 190 O ASN A 268 SHEET 4 AA1 6 SER A 207 CYS A 216 -1 O LEU A 213 N LEU A 189 SHEET 5 AA1 6 GLN A 219 ALA A 228 -1 O GLN A 219 N CYS A 216 SHEET 6 AA1 6 PHE A 361 LEU A 366 -1 O PHE A 363 N GLY A 222 SHEET 1 AA2 4 ASP A 243 PHE A 250 0 SHEET 2 AA2 4 TYR A 339 THR A 346 -1 O PHE A 343 N ILE A 246 SHEET 3 AA2 4 PRO A 322 PHE A 329 -1 N ILE A 324 O THR A 346 SHEET 4 AA2 4 LYS A 308 TYR A 314 -1 N ILE A 309 O ILE A 327 SITE 1 AC1 4 LYS A 215 THR A 367 GLN A 368 HOH A 581 SITE 1 AC2 11 GLU A 204 LYS A 205 THR A 240 LYS A 241 SITE 2 AC2 11 LYS A 242 SER A 263 ASP A 265 HOH A 501 SITE 3 AC2 11 HOH A 503 HOH A 587 HOH A 606 SITE 1 AC3 11 LEU A 189 PHE A 250 GLY A 254 ILE A 255 SITE 2 AC3 11 LEU A 256 TRP A 267 ASN A 268 TYR A 269 SITE 3 AC3 11 ASN A 281 ALA A 283 HOH A 505 CRYST1 85.776 85.776 85.776 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011658 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011658 0.00000