HEADER VIRAL PROTEIN 22-JAN-18 6FJQ TITLE ADENOVIRUS SPECIES 48, FIBER KNOB PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 48; SOURCE 3 ORGANISM_TAXID: 39641; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FIBER, FIBER-KNOB, TROPISM DETERMINANT, HIGH RESOLUTION, STRUCTURE KEYWDS 2 DETERMINATION. ADENOVIRUS, MASTADENOVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,A.L.PARKER,A.T.BAKER REVDAT 3 17-JAN-24 6FJQ 1 REMARK REVDAT 2 06-MAR-19 6FJQ 1 JRNL REVDAT 1 06-FEB-19 6FJQ 0 JRNL AUTH A.T.BAKER,A.GREENSHIELDS-WATSON,L.COUGHLAN,J.A.DAVIES, JRNL AUTH 2 H.UUSI-KERTTULA,D.K.COLE,P.J.RIZKALLAH,A.L.PARKER JRNL TITL DIVERSITY WITHIN THE ADENOVIRUS FIBER KNOB HYPERVARIABLE JRNL TITL 2 LOOPS INFLUENCES PRIMARY RECEPTOR INTERACTIONS. JRNL REF NAT COMMUN V. 10 741 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30765704 JRNL DOI 10.1038/S41467-019-08599-Y REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 572 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.5700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.453 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.370 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.861 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3191 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2845 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4332 ; 2.293 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6683 ; 1.217 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ;10.243 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;36.855 ;26.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;21.371 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;14.440 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3476 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1558 ; 3.750 ; 6.085 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1557 ; 3.749 ; 6.085 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1944 ; 5.925 ; 9.124 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1945 ; 5.923 ; 9.124 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1633 ; 3.947 ; 6.289 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1613 ; 3.705 ; 6.227 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2359 ; 5.872 ; 9.259 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3385 ; 9.680 ;69.447 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3386 ; 9.681 ;69.468 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 196 B 2 196 11828 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2444 25.5695 99.8336 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.0259 REMARK 3 T33: 0.2490 T12: 0.0409 REMARK 3 T13: 0.0118 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.4165 L22: 2.1684 REMARK 3 L33: 4.2314 L12: 0.5493 REMARK 3 L13: -0.2777 L23: -0.2057 REMARK 3 S TENSOR REMARK 3 S11: -0.0404 S12: -0.0572 S13: -0.2867 REMARK 3 S21: 0.0734 S22: -0.0303 S23: -0.1588 REMARK 3 S31: 0.4139 S32: 0.1913 S33: 0.0707 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4952 58.6041 64.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.2667 T22: 0.4182 REMARK 3 T33: 0.0975 T12: 0.0418 REMARK 3 T13: -0.1326 T23: 0.0745 REMARK 3 L TENSOR REMARK 3 L11: 0.5112 L22: 4.0457 REMARK 3 L33: 2.3495 L12: 0.9051 REMARK 3 L13: -0.5339 L23: -0.4358 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: 0.3817 S13: 0.1390 REMARK 3 S21: -0.7035 S22: 0.1567 S23: 0.2808 REMARK 3 S31: -0.0349 S32: -0.3990 S33: -0.0174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1200008285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 83.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 41.20 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 41.40 REMARK 200 R MERGE FOR SHELL (I) : 3.02600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KNB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS-PROPANE, 20% PEG 3350, REMARK 280 0.2M NANO3, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 72.60250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.60250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.60250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.60250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.60250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.60250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 72.60250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 72.60250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 72.60250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 72.60250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 72.60250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 72.60250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 72.60250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 72.60250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 72.60250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 72.60250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 72.60250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 72.60250 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 36.30125 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 108.90375 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 108.90375 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 36.30125 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 36.30125 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 36.30125 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 108.90375 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 108.90375 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 36.30125 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 108.90375 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 36.30125 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 108.90375 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 36.30125 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 108.90375 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 108.90375 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 108.90375 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 36.30125 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 108.90375 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 36.30125 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 36.30125 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 36.30125 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 108.90375 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 108.90375 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 36.30125 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 36.30125 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 108.90375 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 108.90375 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 108.90375 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 108.90375 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 36.30125 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 108.90375 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 36.30125 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 108.90375 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 36.30125 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 36.30125 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 36.30125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -72.60250 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 72.60250 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 145.20500 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 72.60250 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 145.20500 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 72.60250 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -72.60250 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 72.60250 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 145.20500 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 72.60250 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 145.20500 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 72.60250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 21 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 23 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 11.94 -141.12 REMARK 500 ILE A 18 -77.46 -80.96 REMARK 500 CYS A 33 70.62 -113.73 REMARK 500 MET A 52 74.76 34.43 REMARK 500 ASP A 81 0.25 -67.15 REMARK 500 SER A 93 -127.08 6.69 REMARK 500 ASN A 94 -113.66 71.52 REMARK 500 SER A 100 -166.12 63.53 REMARK 500 ALA A 101 90.96 -64.96 REMARK 500 ALA A 105 44.69 -156.22 REMARK 500 PRO A 119 -175.00 -67.60 REMARK 500 PRO A 122 159.11 -34.79 REMARK 500 ASN A 150 63.45 -118.61 REMARK 500 ALA A 173 140.71 -174.68 REMARK 500 LYS A 176 131.00 -39.09 REMARK 500 ASN A 180 71.58 50.55 REMARK 500 LEU B 4 18.97 44.82 REMARK 500 ILE B 18 -77.84 -80.02 REMARK 500 CYS B 33 70.16 -113.22 REMARK 500 MET B 52 79.95 33.44 REMARK 500 SER B 93 136.18 -32.19 REMARK 500 ASN B 94 51.08 -157.46 REMARK 500 ASN B 95 -136.55 96.58 REMARK 500 VAL B 98 -39.62 -21.90 REMARK 500 ALA B 101 -1.21 64.40 REMARK 500 TYR B 102 -163.97 -115.18 REMARK 500 GLU B 103 -169.73 -161.66 REMARK 500 ALA B 105 45.41 -156.35 REMARK 500 PRO B 119 -176.61 -64.47 REMARK 500 ASN B 150 64.19 -119.62 REMARK 500 ALA B 173 141.81 -178.64 REMARK 500 ASN B 180 71.20 51.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 102 GLU A 103 148.73 REMARK 500 GLU A 103 GLU A 104 124.08 REMARK 500 GLY A 163 CYS A 164 -137.41 REMARK 500 GLY B 99 SER B 100 -146.36 REMARK 500 GLU B 103 GLU B 104 129.74 REMARK 500 GLY B 163 CYS B 164 -139.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 206 DBREF 6FJQ A 2 196 UNP A4ZKK6 A4ZKK6_9ADEN 179 373 DBREF 6FJQ B 2 196 UNP A4ZKK6 A4ZKK6_9ADEN 179 373 SEQADV 6FJQ LYS A 3 UNP A4ZKK6 ARG 180 CONFLICT SEQADV 6FJQ LEU A 4 UNP A4ZKK6 ARG 181 CONFLICT SEQADV 6FJQ LYS B 3 UNP A4ZKK6 ARG 180 CONFLICT SEQADV 6FJQ LEU B 4 UNP A4ZKK6 ARG 181 CONFLICT SEQRES 1 A 195 ASP LYS LEU THR LEU TRP THR THR PRO ASP PRO SER PRO SEQRES 2 A 195 ASN CYS LYS ILE ASP GLN ASP LYS ASP SER LYS LEU THR SEQRES 3 A 195 PHE VAL LEU THR LYS CYS GLY SER GLN ILE LEU ALA ASN SEQRES 4 A 195 MET SER LEU LEU VAL VAL LYS GLY LYS PHE SER MET ILE SEQRES 5 A 195 ASN ASN LYS VAL ASN GLY THR ASP ASP TYR LYS LYS PHE SEQRES 6 A 195 THR ILE LYS LEU LEU PHE ASP GLU LYS GLY VAL LEU LEU SEQRES 7 A 195 LYS ASP SER SER LEU ASP LYS GLU TYR TRP ASN TYR ARG SEQRES 8 A 195 SER ASN ASN ASN ASN VAL GLY SER ALA TYR GLU GLU ALA SEQRES 9 A 195 VAL GLY PHE MET PRO SER THR THR ALA TYR PRO LYS PRO SEQRES 10 A 195 PRO THR PRO PRO THR ASN PRO THR THR PRO LEU GLU LYS SEQRES 11 A 195 SER GLN ALA LYS ASN LYS TYR VAL SER ASN VAL TYR LEU SEQRES 12 A 195 GLY GLY GLN ALA GLY ASN PRO VAL ALA THR THR VAL SER SEQRES 13 A 195 PHE ASN LYS GLU THR GLY CYS THR TYR SER ILE THR PHE SEQRES 14 A 195 ASP PHE ALA TRP ASN LYS THR TYR GLU ASN VAL GLN PHE SEQRES 15 A 195 ASP SER SER PHE LEU THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 B 195 ASP LYS LEU THR LEU TRP THR THR PRO ASP PRO SER PRO SEQRES 2 B 195 ASN CYS LYS ILE ASP GLN ASP LYS ASP SER LYS LEU THR SEQRES 3 B 195 PHE VAL LEU THR LYS CYS GLY SER GLN ILE LEU ALA ASN SEQRES 4 B 195 MET SER LEU LEU VAL VAL LYS GLY LYS PHE SER MET ILE SEQRES 5 B 195 ASN ASN LYS VAL ASN GLY THR ASP ASP TYR LYS LYS PHE SEQRES 6 B 195 THR ILE LYS LEU LEU PHE ASP GLU LYS GLY VAL LEU LEU SEQRES 7 B 195 LYS ASP SER SER LEU ASP LYS GLU TYR TRP ASN TYR ARG SEQRES 8 B 195 SER ASN ASN ASN ASN VAL GLY SER ALA TYR GLU GLU ALA SEQRES 9 B 195 VAL GLY PHE MET PRO SER THR THR ALA TYR PRO LYS PRO SEQRES 10 B 195 PRO THR PRO PRO THR ASN PRO THR THR PRO LEU GLU LYS SEQRES 11 B 195 SER GLN ALA LYS ASN LYS TYR VAL SER ASN VAL TYR LEU SEQRES 12 B 195 GLY GLY GLN ALA GLY ASN PRO VAL ALA THR THR VAL SER SEQRES 13 B 195 PHE ASN LYS GLU THR GLY CYS THR TYR SER ILE THR PHE SEQRES 14 B 195 ASP PHE ALA TRP ASN LYS THR TYR GLU ASN VAL GLN PHE SEQRES 15 B 195 ASP SER SER PHE LEU THR PHE SER TYR ILE ALA GLN GLU HET EDO A 301 4 HET GOL A 302 6 HET SO4 A 303 5 HET SO4 A 304 5 HET EDO B 201 4 HET EDO B 202 4 HET GOL B 203 6 HET SO4 B 204 5 HET SO4 B 205 5 HET SO4 B 206 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 SO4 5(O4 S 2-) FORMUL 13 HOH *9(H2 O) HELIX 1 AA1 THR A 60 TYR A 63 5 4 HELIX 2 AA2 ASP A 85 GLU A 87 5 3 HELIX 3 AA3 ALA A 105 MET A 109 5 5 HELIX 4 AA4 GLN A 133 LYS A 135 5 3 HELIX 5 AA5 GLY A 145 GLN A 147 5 3 HELIX 6 AA6 THR B 60 TYR B 63 5 4 HELIX 7 AA7 ASP B 85 GLU B 87 5 3 HELIX 8 AA8 ALA B 105 MET B 109 5 5 HELIX 9 AA9 GLN B 133 LYS B 135 5 3 HELIX 10 AB1 GLY B 145 GLN B 147 5 3 SHEET 1 AA1 5 TRP A 89 TYR A 91 0 SHEET 2 AA1 5 THR A 5 THR A 8 -1 N TRP A 7 O ASN A 90 SHEET 3 AA1 5 SER A 24 CYS A 33 -1 O LEU A 30 N LEU A 6 SHEET 4 AA1 5 GLN A 36 VAL A 45 -1 O LEU A 44 N LYS A 25 SHEET 5 AA1 5 LEU A 188 ILE A 193 -1 O TYR A 192 N ILE A 37 SHEET 1 AA2 2 ILE A 53 ASN A 54 0 SHEET 2 AA2 2 GLU A 179 VAL A 181 -1 O VAL A 181 N ILE A 53 SHEET 1 AA3 4 LYS A 65 PHE A 72 0 SHEET 2 AA3 4 TYR A 166 ALA A 173 -1 O ILE A 168 N LEU A 70 SHEET 3 AA3 4 PRO A 151 PHE A 158 -1 N THR A 155 O ASP A 171 SHEET 4 AA3 4 LYS A 137 TYR A 143 -1 N SER A 140 O THR A 154 SHEET 1 AA4 5 TRP B 89 TYR B 91 0 SHEET 2 AA4 5 THR B 5 THR B 8 -1 N TRP B 7 O ASN B 90 SHEET 3 AA4 5 SER B 24 CYS B 33 -1 O LEU B 30 N LEU B 6 SHEET 4 AA4 5 GLN B 36 VAL B 45 -1 O LEU B 44 N LYS B 25 SHEET 5 AA4 5 LEU B 188 ILE B 193 -1 O TYR B 192 N ILE B 37 SHEET 1 AA5 2 ILE B 53 ASN B 54 0 SHEET 2 AA5 2 GLU B 179 VAL B 181 -1 O VAL B 181 N ILE B 53 SHEET 1 AA6 4 LYS B 65 PHE B 72 0 SHEET 2 AA6 4 TYR B 166 ALA B 173 -1 O ILE B 168 N LEU B 70 SHEET 3 AA6 4 PRO B 151 PHE B 158 -1 N THR B 155 O ASP B 171 SHEET 4 AA6 4 LYS B 137 TYR B 143 -1 N SER B 140 O THR B 154 SITE 1 AC1 3 TRP A 7 THR A 8 PRO A 10 SITE 1 AC2 7 ASN A 15 CYS A 16 LYS A 17 ASP A 21 SITE 2 AC2 7 LYS A 22 SER A 83 ASP A 85 SITE 1 AC3 6 LEU A 38 ALA A 39 THR A 189 PHE A 190 SITE 2 AC3 6 SER A 191 HOH A 401 SITE 1 AC4 8 TYR A 138 VAL A 139 SER A 140 ASN A 141 SITE 2 AC4 8 TYR A 143 SER A 186 PHE A 187 LEU A 188 SITE 1 AC5 4 LYS B 117 ASN B 159 GLU B 161 CYS B 164 SITE 1 AC6 4 LEU B 38 THR B 189 PHE B 190 SO4 B 206 SITE 1 AC7 4 TRP B 7 THR B 8 PRO B 10 THR B 27 SITE 1 AC8 6 TYR B 138 VAL B 139 SER B 140 ASN B 141 SITE 2 AC8 6 SER B 186 PHE B 187 SITE 1 AC9 6 VAL B 139 SER B 140 ASN B 141 TYR B 143 SITE 2 AC9 6 ALA B 148 ALA B 153 SITE 1 AD1 4 TYR B 138 THR B 189 PHE B 190 EDO B 202 CRYST1 145.205 145.205 145.205 90.00 90.00 90.00 P 43 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006887 0.00000