data_6FK5 # _entry.id 6FK5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6FK5 pdb_00006fk5 10.2210/pdb6fk5/pdb WWPDB D_1200008492 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-31 2 'Structure model' 1 1 2018-12-26 3 'Structure model' 1 2 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.value' 13 3 'Structure model' '_struct_conn.pdbx_dist_value' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6FK5 _pdbx_database_status.recvd_initial_deposition_date 2018-01-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 6FK4 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Silhan, J.' 1 0000-0003-3868-5714 'Zhao, Q.' 2 ? 'Boura, E.' 3 ? 'Thomson, H.' 4 ? 'Foster, A.' 5 ? 'Tang, C.M.' 6 ? 'Freemont, P.S.' 7 ? 'Baldwin, G.S.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 11980 _citation.page_last 11989 _citation.title ;Structural basis for recognition and repair of the 3'-phosphate by NExo, a base excision DNA repair nuclease from Neisseria meningitidis. ; _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky934 _citation.pdbx_database_id_PubMed 30329088 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Silhan, J.' 1 ? primary 'Zhao, Q.' 2 ? primary 'Boura, E.' 3 ? primary 'Thomson, H.' 4 ? primary 'Forster, A.' 5 ? primary 'Tang, C.M.' 6 ? primary 'Freemont, P.S.' 7 ? primary 'Baldwin, G.S.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NExo D146N' 29317.445 1 ? ? ? ? 2 polymer man ;DNA (5'-D(P*CP*TP*AP*GP*CP*GP*AP*AP*GP*CP*TP*AP*GP*A)-3') ; 5589.642 1 ? ? ? ;3' Phosphate at the last residue ; 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 5 water nat water 18.015 154 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GAMKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHF GLPALPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGNFNIAPADADCYD PEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLET RALERPSDHAPVTAEFDW ; ;GAMKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHF GLPALPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGNFNIAPADADCYD PEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLET RALERPSDHAPVTAEFDW ; A ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DG)(DG)(DC)(DT)(DA)(DG)(DC)(DG)(DA)(DA)(DG)(DC)(DT)(DA)(DG)(DA)' ATGGCTAGCGAAGCTAGA B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 LYS n 1 5 ILE n 1 6 THR n 1 7 THR n 1 8 TRP n 1 9 ASN n 1 10 VAL n 1 11 ASN n 1 12 SER n 1 13 LEU n 1 14 ASN n 1 15 VAL n 1 16 ARG n 1 17 LEU n 1 18 PRO n 1 19 GLN n 1 20 VAL n 1 21 GLN n 1 22 ASN n 1 23 LEU n 1 24 LEU n 1 25 ALA n 1 26 ASP n 1 27 ASN n 1 28 PRO n 1 29 PRO n 1 30 ASP n 1 31 ILE n 1 32 LEU n 1 33 VAL n 1 34 LEU n 1 35 GLN n 1 36 GLU n 1 37 LEU n 1 38 LYS n 1 39 LEU n 1 40 ASP n 1 41 GLN n 1 42 ASP n 1 43 LYS n 1 44 PHE n 1 45 PRO n 1 46 ALA n 1 47 ALA n 1 48 ALA n 1 49 LEU n 1 50 GLN n 1 51 MET n 1 52 MET n 1 53 GLY n 1 54 TRP n 1 55 HIS n 1 56 CYS n 1 57 VAL n 1 58 TRP n 1 59 SER n 1 60 GLY n 1 61 GLN n 1 62 LYS n 1 63 THR n 1 64 TYR n 1 65 ASN n 1 66 GLY n 1 67 VAL n 1 68 ALA n 1 69 ILE n 1 70 VAL n 1 71 SER n 1 72 ARG n 1 73 SER n 1 74 VAL n 1 75 PRO n 1 76 GLN n 1 77 ASP n 1 78 VAL n 1 79 HIS n 1 80 PHE n 1 81 GLY n 1 82 LEU n 1 83 PRO n 1 84 ALA n 1 85 LEU n 1 86 PRO n 1 87 ASP n 1 88 ASP n 1 89 PRO n 1 90 GLN n 1 91 ARG n 1 92 ARG n 1 93 VAL n 1 94 ILE n 1 95 ALA n 1 96 ALA n 1 97 THR n 1 98 VAL n 1 99 SER n 1 100 GLY n 1 101 VAL n 1 102 ARG n 1 103 VAL n 1 104 ILE n 1 105 ASN n 1 106 VAL n 1 107 TYR n 1 108 CYS n 1 109 VAL n 1 110 ASN n 1 111 GLY n 1 112 GLU n 1 113 ALA n 1 114 LEU n 1 115 ASP n 1 116 SER n 1 117 PRO n 1 118 LYS n 1 119 PHE n 1 120 LYS n 1 121 TYR n 1 122 LYS n 1 123 GLU n 1 124 GLN n 1 125 TRP n 1 126 PHE n 1 127 ALA n 1 128 ALA n 1 129 LEU n 1 130 THR n 1 131 GLU n 1 132 PHE n 1 133 VAL n 1 134 ARG n 1 135 ASP n 1 136 GLU n 1 137 MET n 1 138 THR n 1 139 ARG n 1 140 HIS n 1 141 GLY n 1 142 LYS n 1 143 LEU n 1 144 VAL n 1 145 LEU n 1 146 LEU n 1 147 GLY n 1 148 ASN n 1 149 PHE n 1 150 ASN n 1 151 ILE n 1 152 ALA n 1 153 PRO n 1 154 ALA n 1 155 ASP n 1 156 ALA n 1 157 ASP n 1 158 CYS n 1 159 TYR n 1 160 ASP n 1 161 PRO n 1 162 GLU n 1 163 LYS n 1 164 TRP n 1 165 HIS n 1 166 GLU n 1 167 LYS n 1 168 ILE n 1 169 HIS n 1 170 CYS n 1 171 SER n 1 172 SER n 1 173 VAL n 1 174 GLU n 1 175 ARG n 1 176 GLN n 1 177 TRP n 1 178 PHE n 1 179 GLN n 1 180 ASN n 1 181 LEU n 1 182 LEU n 1 183 ASP n 1 184 LEU n 1 185 GLY n 1 186 LEU n 1 187 THR n 1 188 ASP n 1 189 SER n 1 190 LEU n 1 191 ARG n 1 192 GLN n 1 193 VAL n 1 194 HIS n 1 195 PRO n 1 196 GLU n 1 197 GLY n 1 198 ALA n 1 199 PHE n 1 200 TYR n 1 201 THR n 1 202 TRP n 1 203 PHE n 1 204 ASP n 1 205 TYR n 1 206 ARG n 1 207 GLY n 1 208 ALA n 1 209 MET n 1 210 PHE n 1 211 GLN n 1 212 ARG n 1 213 LYS n 1 214 LEU n 1 215 GLY n 1 216 LEU n 1 217 ARG n 1 218 ILE n 1 219 ASP n 1 220 HIS n 1 221 ILE n 1 222 LEU n 1 223 VAL n 1 224 SER n 1 225 PRO n 1 226 ALA n 1 227 MET n 1 228 ALA n 1 229 ALA n 1 230 ALA n 1 231 LEU n 1 232 LYS n 1 233 ASP n 1 234 VAL n 1 235 ARG n 1 236 VAL n 1 237 ASP n 1 238 LEU n 1 239 GLU n 1 240 THR n 1 241 ARG n 1 242 ALA n 1 243 LEU n 1 244 GLU n 1 245 ARG n 1 246 PRO n 1 247 SER n 1 248 ASP n 1 249 HIS n 1 250 ALA n 1 251 PRO n 1 252 VAL n 1 253 THR n 1 254 ALA n 1 255 GLU n 1 256 PHE n 1 257 ASP n 1 258 TRP n 2 1 DA n 2 2 DT n 2 3 DG n 2 4 DG n 2 5 DC n 2 6 DT n 2 7 DA n 2 8 DG n 2 9 DC n 2 10 DG n 2 11 DA n 2 12 DA n 2 13 DG n 2 14 DC n 2 15 DT n 2 16 DA n 2 17 DG n 2 18 DA n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 258 ? ? ? ? ? ? ? ? ? 'Neisseria meningitidis MC58' 122586 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 18 ? ? ? ? ? ? ? ? ? 'other sequences' 28384 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 ALA 2 0 0 ALA ALA A . n A 1 3 MET 3 1 1 MET MET A . n A 1 4 LYS 4 2 2 LYS LYS A . n A 1 5 ILE 5 3 3 ILE ILE A . n A 1 6 THR 6 4 4 THR THR A . n A 1 7 THR 7 5 5 THR THR A . n A 1 8 TRP 8 6 6 TRP TRP A . n A 1 9 ASN 9 7 7 ASN ASN A . n A 1 10 VAL 10 8 8 VAL VAL A . n A 1 11 ASN 11 9 9 ASN ASN A . n A 1 12 SER 12 10 10 SER SER A . n A 1 13 LEU 13 11 11 LEU LEU A . n A 1 14 ASN 14 12 12 ASN ASN A . n A 1 15 VAL 15 13 13 VAL VAL A . n A 1 16 ARG 16 14 14 ARG ARG A . n A 1 17 LEU 17 15 15 LEU LEU A . n A 1 18 PRO 18 16 16 PRO PRO A . n A 1 19 GLN 19 17 17 GLN GLN A . n A 1 20 VAL 20 18 18 VAL VAL A . n A 1 21 GLN 21 19 19 GLN GLN A . n A 1 22 ASN 22 20 20 ASN ASN A . n A 1 23 LEU 23 21 21 LEU LEU A . n A 1 24 LEU 24 22 22 LEU LEU A . n A 1 25 ALA 25 23 23 ALA ALA A . n A 1 26 ASP 26 24 24 ASP ASP A . n A 1 27 ASN 27 25 25 ASN ASN A . n A 1 28 PRO 28 26 26 PRO PRO A . n A 1 29 PRO 29 27 27 PRO PRO A . n A 1 30 ASP 30 28 28 ASP ASP A . n A 1 31 ILE 31 29 29 ILE ILE A . n A 1 32 LEU 32 30 30 LEU LEU A . n A 1 33 VAL 33 31 31 VAL VAL A . n A 1 34 LEU 34 32 32 LEU LEU A . n A 1 35 GLN 35 33 33 GLN GLN A . n A 1 36 GLU 36 34 34 GLU GLU A . n A 1 37 LEU 37 35 35 LEU LEU A . n A 1 38 LYS 38 36 36 LYS LYS A . n A 1 39 LEU 39 37 37 LEU LEU A . n A 1 40 ASP 40 38 38 ASP ASP A . n A 1 41 GLN 41 39 39 GLN GLN A . n A 1 42 ASP 42 40 40 ASP ASP A . n A 1 43 LYS 43 41 41 LYS LYS A . n A 1 44 PHE 44 42 42 PHE PHE A . n A 1 45 PRO 45 43 43 PRO PRO A . n A 1 46 ALA 46 44 44 ALA ALA A . n A 1 47 ALA 47 45 45 ALA ALA A . n A 1 48 ALA 48 46 46 ALA ALA A . n A 1 49 LEU 49 47 47 LEU LEU A . n A 1 50 GLN 50 48 48 GLN GLN A . n A 1 51 MET 51 49 49 MET MET A . n A 1 52 MET 52 50 50 MET MET A . n A 1 53 GLY 53 51 51 GLY GLY A . n A 1 54 TRP 54 52 52 TRP TRP A . n A 1 55 HIS 55 53 53 HIS HIS A . n A 1 56 CYS 56 54 54 CYS CYS A . n A 1 57 VAL 57 55 55 VAL VAL A . n A 1 58 TRP 58 56 56 TRP TRP A . n A 1 59 SER 59 57 57 SER SER A . n A 1 60 GLY 60 58 58 GLY GLY A . n A 1 61 GLN 61 59 59 GLN GLN A . n A 1 62 LYS 62 60 60 LYS LYS A . n A 1 63 THR 63 61 61 THR THR A . n A 1 64 TYR 64 62 62 TYR TYR A . n A 1 65 ASN 65 63 63 ASN ASN A . n A 1 66 GLY 66 64 64 GLY GLY A . n A 1 67 VAL 67 65 65 VAL VAL A . n A 1 68 ALA 68 66 66 ALA ALA A . n A 1 69 ILE 69 67 67 ILE ILE A . n A 1 70 VAL 70 68 68 VAL VAL A . n A 1 71 SER 71 69 69 SER SER A . n A 1 72 ARG 72 70 70 ARG ARG A . n A 1 73 SER 73 71 71 SER SER A . n A 1 74 VAL 74 72 72 VAL VAL A . n A 1 75 PRO 75 73 73 PRO PRO A . n A 1 76 GLN 76 74 74 GLN GLN A . n A 1 77 ASP 77 75 75 ASP ASP A . n A 1 78 VAL 78 76 76 VAL VAL A . n A 1 79 HIS 79 77 77 HIS HIS A . n A 1 80 PHE 80 78 78 PHE PHE A . n A 1 81 GLY 81 79 79 GLY GLY A . n A 1 82 LEU 82 80 80 LEU LEU A . n A 1 83 PRO 83 81 81 PRO PRO A . n A 1 84 ALA 84 82 82 ALA ALA A . n A 1 85 LEU 85 83 83 LEU LEU A . n A 1 86 PRO 86 84 84 PRO PRO A . n A 1 87 ASP 87 85 85 ASP ASP A . n A 1 88 ASP 88 86 86 ASP ASP A . n A 1 89 PRO 89 87 87 PRO PRO A . n A 1 90 GLN 90 88 88 GLN GLN A . n A 1 91 ARG 91 89 89 ARG ARG A . n A 1 92 ARG 92 90 90 ARG ARG A . n A 1 93 VAL 93 91 91 VAL VAL A . n A 1 94 ILE 94 92 92 ILE ILE A . n A 1 95 ALA 95 93 93 ALA ALA A . n A 1 96 ALA 96 94 94 ALA ALA A . n A 1 97 THR 97 95 95 THR THR A . n A 1 98 VAL 98 96 96 VAL VAL A . n A 1 99 SER 99 97 97 SER SER A . n A 1 100 GLY 100 98 98 GLY GLY A . n A 1 101 VAL 101 99 99 VAL VAL A . n A 1 102 ARG 102 100 100 ARG ARG A . n A 1 103 VAL 103 101 101 VAL VAL A . n A 1 104 ILE 104 102 102 ILE ILE A . n A 1 105 ASN 105 103 103 ASN ASN A . n A 1 106 VAL 106 104 104 VAL VAL A . n A 1 107 TYR 107 105 105 TYR TYR A . n A 1 108 CYS 108 106 106 CYS CYS A . n A 1 109 VAL 109 107 107 VAL VAL A . n A 1 110 ASN 110 108 108 ASN ASN A . n A 1 111 GLY 111 109 109 GLY GLY A . n A 1 112 GLU 112 110 110 GLU GLU A . n A 1 113 ALA 113 111 111 ALA ALA A . n A 1 114 LEU 114 112 112 LEU LEU A . n A 1 115 ASP 115 113 113 ASP ASP A . n A 1 116 SER 116 114 114 SER SER A . n A 1 117 PRO 117 115 115 PRO PRO A . n A 1 118 LYS 118 116 116 LYS LYS A . n A 1 119 PHE 119 117 117 PHE PHE A . n A 1 120 LYS 120 118 118 LYS LYS A . n A 1 121 TYR 121 119 119 TYR TYR A . n A 1 122 LYS 122 120 120 LYS LYS A . n A 1 123 GLU 123 121 121 GLU GLU A . n A 1 124 GLN 124 122 122 GLN GLN A . n A 1 125 TRP 125 123 123 TRP TRP A . n A 1 126 PHE 126 124 124 PHE PHE A . n A 1 127 ALA 127 125 125 ALA ALA A . n A 1 128 ALA 128 126 126 ALA ALA A . n A 1 129 LEU 129 127 127 LEU LEU A . n A 1 130 THR 130 128 128 THR THR A . n A 1 131 GLU 131 129 129 GLU GLU A . n A 1 132 PHE 132 130 130 PHE PHE A . n A 1 133 VAL 133 131 131 VAL VAL A . n A 1 134 ARG 134 132 132 ARG ARG A . n A 1 135 ASP 135 133 133 ASP ASP A . n A 1 136 GLU 136 134 134 GLU GLU A . n A 1 137 MET 137 135 135 MET MET A . n A 1 138 THR 138 136 136 THR THR A . n A 1 139 ARG 139 137 137 ARG ARG A . n A 1 140 HIS 140 138 138 HIS HIS A . n A 1 141 GLY 141 139 139 GLY GLY A . n A 1 142 LYS 142 140 140 LYS LYS A . n A 1 143 LEU 143 141 141 LEU LEU A . n A 1 144 VAL 144 142 142 VAL VAL A . n A 1 145 LEU 145 143 143 LEU LEU A . n A 1 146 LEU 146 144 144 LEU LEU A . n A 1 147 GLY 147 145 145 GLY GLY A . n A 1 148 ASN 148 146 146 ASN ASN A . n A 1 149 PHE 149 147 147 PHE PHE A . n A 1 150 ASN 150 148 148 ASN ASN A . n A 1 151 ILE 151 149 149 ILE ILE A . n A 1 152 ALA 152 150 150 ALA ALA A . n A 1 153 PRO 153 151 151 PRO PRO A . n A 1 154 ALA 154 152 152 ALA ALA A . n A 1 155 ASP 155 153 153 ASP ASP A . n A 1 156 ALA 156 154 154 ALA ALA A . n A 1 157 ASP 157 155 155 ASP ASP A . n A 1 158 CYS 158 156 156 CYS CYS A . n A 1 159 TYR 159 157 157 TYR TYR A . n A 1 160 ASP 160 158 158 ASP ASP A . n A 1 161 PRO 161 159 159 PRO PRO A . n A 1 162 GLU 162 160 160 GLU GLU A . n A 1 163 LYS 163 161 161 LYS LYS A . n A 1 164 TRP 164 162 162 TRP TRP A . n A 1 165 HIS 165 163 163 HIS HIS A . n A 1 166 GLU 166 164 164 GLU GLU A . n A 1 167 LYS 167 165 165 LYS LYS A . n A 1 168 ILE 168 166 166 ILE ILE A . n A 1 169 HIS 169 167 167 HIS HIS A . n A 1 170 CYS 170 168 168 CYS CYS A . n A 1 171 SER 171 169 169 SER SER A . n A 1 172 SER 172 170 170 SER SER A . n A 1 173 VAL 173 171 171 VAL VAL A . n A 1 174 GLU 174 172 172 GLU GLU A . n A 1 175 ARG 175 173 173 ARG ARG A . n A 1 176 GLN 176 174 174 GLN GLN A . n A 1 177 TRP 177 175 175 TRP TRP A . n A 1 178 PHE 178 176 176 PHE PHE A . n A 1 179 GLN 179 177 177 GLN GLN A . n A 1 180 ASN 180 178 178 ASN ASN A . n A 1 181 LEU 181 179 179 LEU LEU A . n A 1 182 LEU 182 180 180 LEU LEU A . n A 1 183 ASP 183 181 181 ASP ASP A . n A 1 184 LEU 184 182 182 LEU LEU A . n A 1 185 GLY 185 183 183 GLY GLY A . n A 1 186 LEU 186 184 184 LEU LEU A . n A 1 187 THR 187 185 185 THR THR A . n A 1 188 ASP 188 186 186 ASP ASP A . n A 1 189 SER 189 187 187 SER SER A . n A 1 190 LEU 190 188 188 LEU LEU A . n A 1 191 ARG 191 189 189 ARG ARG A . n A 1 192 GLN 192 190 190 GLN GLN A . n A 1 193 VAL 193 191 191 VAL VAL A . n A 1 194 HIS 194 192 192 HIS HIS A . n A 1 195 PRO 195 193 193 PRO PRO A . n A 1 196 GLU 196 194 194 GLU GLU A . n A 1 197 GLY 197 195 195 GLY GLY A . n A 1 198 ALA 198 196 196 ALA ALA A . n A 1 199 PHE 199 197 197 PHE PHE A . n A 1 200 TYR 200 198 198 TYR TYR A . n A 1 201 THR 201 199 199 THR THR A . n A 1 202 TRP 202 200 200 TRP TRP A . n A 1 203 PHE 203 201 201 PHE PHE A . n A 1 204 ASP 204 202 202 ASP ASP A . n A 1 205 TYR 205 203 203 TYR TYR A . n A 1 206 ARG 206 204 204 ARG ARG A . n A 1 207 GLY 207 205 205 GLY GLY A . n A 1 208 ALA 208 206 206 ALA ALA A . n A 1 209 MET 209 207 207 MET MET A . n A 1 210 PHE 210 208 208 PHE PHE A . n A 1 211 GLN 211 209 209 GLN GLN A . n A 1 212 ARG 212 210 210 ARG ARG A . n A 1 213 LYS 213 211 211 LYS LYS A . n A 1 214 LEU 214 212 212 LEU LEU A . n A 1 215 GLY 215 213 213 GLY GLY A . n A 1 216 LEU 216 214 214 LEU LEU A . n A 1 217 ARG 217 215 215 ARG ARG A . n A 1 218 ILE 218 216 216 ILE ILE A . n A 1 219 ASP 219 217 217 ASP ASP A . n A 1 220 HIS 220 218 218 HIS HIS A . n A 1 221 ILE 221 219 219 ILE ILE A . n A 1 222 LEU 222 220 220 LEU LEU A . n A 1 223 VAL 223 221 221 VAL VAL A . n A 1 224 SER 224 222 222 SER SER A . n A 1 225 PRO 225 223 223 PRO PRO A . n A 1 226 ALA 226 224 224 ALA ALA A . n A 1 227 MET 227 225 225 MET MET A . n A 1 228 ALA 228 226 226 ALA ALA A . n A 1 229 ALA 229 227 227 ALA ALA A . n A 1 230 ALA 230 228 228 ALA ALA A . n A 1 231 LEU 231 229 229 LEU LEU A . n A 1 232 LYS 232 230 230 LYS LYS A . n A 1 233 ASP 233 231 231 ASP ASP A . n A 1 234 VAL 234 232 232 VAL VAL A . n A 1 235 ARG 235 233 233 ARG ARG A . n A 1 236 VAL 236 234 234 VAL VAL A . n A 1 237 ASP 237 235 235 ASP ASP A . n A 1 238 LEU 238 236 236 LEU LEU A . n A 1 239 GLU 239 237 237 GLU GLU A . n A 1 240 THR 240 238 238 THR THR A . n A 1 241 ARG 241 239 239 ARG ARG A . n A 1 242 ALA 242 240 240 ALA ALA A . n A 1 243 LEU 243 241 241 LEU LEU A . n A 1 244 GLU 244 242 242 GLU GLU A . n A 1 245 ARG 245 243 243 ARG ARG A . n A 1 246 PRO 246 244 244 PRO PRO A . n A 1 247 SER 247 245 245 SER SER A . n A 1 248 ASP 248 246 246 ASP ASP A . n A 1 249 HIS 249 247 247 HIS HIS A . n A 1 250 ALA 250 248 248 ALA ALA A . n A 1 251 PRO 251 249 249 PRO PRO A . n A 1 252 VAL 252 250 250 VAL VAL A . n A 1 253 THR 253 251 251 THR THR A . n A 1 254 ALA 254 252 252 ALA ALA A . n A 1 255 GLU 255 253 253 GLU GLU A . n A 1 256 PHE 256 254 254 PHE PHE A . n A 1 257 ASP 257 255 255 ASP ASP A . n A 1 258 TRP 258 256 256 TRP TRP A . n B 2 1 DA 1 1 ? ? ? B . n B 2 2 DT 2 2 ? ? ? B . n B 2 3 DG 3 3 ? ? ? B . n B 2 4 DG 4 4 ? ? ? B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DA 11 11 11 DA DA B . n B 2 12 DA 12 12 12 DA DA B . n B 2 13 DG 13 13 13 DG DG B . n B 2 14 DC 14 14 14 DC DC B . n B 2 15 DT 15 15 15 DT DT B . n B 2 16 DA 16 16 16 DA DA B . n B 2 17 DG 17 17 17 DG DG B . n B 2 18 DA 18 18 18 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 301 1 MG MG A . D 3 MG 1 302 2 MG MG A . E 4 MPD 1 303 1 MPD MPD A . F 5 HOH 1 401 112 HOH HOH A . F 5 HOH 2 402 149 HOH HOH A . F 5 HOH 3 403 57 HOH HOH A . F 5 HOH 4 404 101 HOH HOH A . F 5 HOH 5 405 35 HOH HOH A . F 5 HOH 6 406 43 HOH HOH A . F 5 HOH 7 407 122 HOH HOH A . F 5 HOH 8 408 48 HOH HOH A . F 5 HOH 9 409 10 HOH HOH A . F 5 HOH 10 410 110 HOH HOH A . F 5 HOH 11 411 20 HOH HOH A . F 5 HOH 12 412 129 HOH HOH A . F 5 HOH 13 413 39 HOH HOH A . F 5 HOH 14 414 55 HOH HOH A . F 5 HOH 15 415 65 HOH HOH A . F 5 HOH 16 416 93 HOH HOH A . F 5 HOH 17 417 34 HOH HOH A . F 5 HOH 18 418 23 HOH HOH A . F 5 HOH 19 419 61 HOH HOH A . F 5 HOH 20 420 40 HOH HOH A . F 5 HOH 21 421 29 HOH HOH A . F 5 HOH 22 422 63 HOH HOH A . F 5 HOH 23 423 37 HOH HOH A . F 5 HOH 24 424 104 HOH HOH A . F 5 HOH 25 425 8 HOH HOH A . F 5 HOH 26 426 134 HOH HOH A . F 5 HOH 27 427 99 HOH HOH A . F 5 HOH 28 428 11 HOH HOH A . F 5 HOH 29 429 19 HOH HOH A . F 5 HOH 30 430 76 HOH HOH A . F 5 HOH 31 431 94 HOH HOH A . F 5 HOH 32 432 118 HOH HOH A . F 5 HOH 33 433 58 HOH HOH A . F 5 HOH 34 434 44 HOH HOH A . F 5 HOH 35 435 137 HOH HOH A . F 5 HOH 36 436 91 HOH HOH A . F 5 HOH 37 437 66 HOH HOH A . F 5 HOH 38 438 41 HOH HOH A . F 5 HOH 39 439 139 HOH HOH A . F 5 HOH 40 440 12 HOH HOH A . F 5 HOH 41 441 21 HOH HOH A . F 5 HOH 42 442 9 HOH HOH A . F 5 HOH 43 443 7 HOH HOH A . F 5 HOH 44 444 13 HOH HOH A . F 5 HOH 45 445 89 HOH HOH A . F 5 HOH 46 446 42 HOH HOH A . F 5 HOH 47 447 24 HOH HOH A . F 5 HOH 48 448 71 HOH HOH A . F 5 HOH 49 449 140 HOH HOH A . F 5 HOH 50 450 49 HOH HOH A . F 5 HOH 51 451 5 HOH HOH A . F 5 HOH 52 452 78 HOH HOH A . F 5 HOH 53 453 50 HOH HOH A . F 5 HOH 54 454 116 HOH HOH A . F 5 HOH 55 455 107 HOH HOH A . F 5 HOH 56 456 111 HOH HOH A . F 5 HOH 57 457 6 HOH HOH A . F 5 HOH 58 458 2 HOH HOH A . F 5 HOH 59 459 121 HOH HOH A . F 5 HOH 60 460 17 HOH HOH A . F 5 HOH 61 461 45 HOH HOH A . F 5 HOH 62 462 22 HOH HOH A . F 5 HOH 63 463 132 HOH HOH A . F 5 HOH 64 464 133 HOH HOH A . F 5 HOH 65 465 62 HOH HOH A . F 5 HOH 66 466 16 HOH HOH A . F 5 HOH 67 467 106 HOH HOH A . F 5 HOH 68 468 115 HOH HOH A . F 5 HOH 69 469 68 HOH HOH A . F 5 HOH 70 470 79 HOH HOH A . F 5 HOH 71 471 14 HOH HOH A . F 5 HOH 72 472 135 HOH HOH A . F 5 HOH 73 473 117 HOH HOH A . F 5 HOH 74 474 128 HOH HOH A . F 5 HOH 75 475 36 HOH HOH A . F 5 HOH 76 476 80 HOH HOH A . F 5 HOH 77 477 32 HOH HOH A . F 5 HOH 78 478 30 HOH HOH A . F 5 HOH 79 479 70 HOH HOH A . F 5 HOH 80 480 60 HOH HOH A . F 5 HOH 81 481 141 HOH HOH A . F 5 HOH 82 482 120 HOH HOH A . F 5 HOH 83 483 73 HOH HOH A . F 5 HOH 84 484 144 HOH HOH A . F 5 HOH 85 485 26 HOH HOH A . F 5 HOH 86 486 53 HOH HOH A . F 5 HOH 87 487 27 HOH HOH A . F 5 HOH 88 488 52 HOH HOH A . F 5 HOH 89 489 142 HOH HOH A . F 5 HOH 90 490 136 HOH HOH A . F 5 HOH 91 491 113 HOH HOH A . F 5 HOH 92 492 77 HOH HOH A . F 5 HOH 93 493 51 HOH HOH A . F 5 HOH 94 494 28 HOH HOH A . F 5 HOH 95 495 103 HOH HOH A . F 5 HOH 96 496 75 HOH HOH A . F 5 HOH 97 497 46 HOH HOH A . F 5 HOH 98 498 95 HOH HOH A . F 5 HOH 99 499 67 HOH HOH A . F 5 HOH 100 500 25 HOH HOH A . F 5 HOH 101 501 18 HOH HOH A . F 5 HOH 102 502 147 HOH HOH A . F 5 HOH 103 503 143 HOH HOH A . F 5 HOH 104 504 98 HOH HOH A . F 5 HOH 105 505 38 HOH HOH A . F 5 HOH 106 506 31 HOH HOH A . F 5 HOH 107 507 154 HOH HOH A . F 5 HOH 108 508 102 HOH HOH A . F 5 HOH 109 509 148 HOH HOH A . F 5 HOH 110 510 72 HOH HOH A . F 5 HOH 111 511 3 HOH HOH A . F 5 HOH 112 512 83 HOH HOH A . F 5 HOH 113 513 151 HOH HOH A . F 5 HOH 114 514 150 HOH HOH A . F 5 HOH 115 515 92 HOH HOH A . F 5 HOH 116 516 152 HOH HOH A . F 5 HOH 117 517 54 HOH HOH A . F 5 HOH 118 518 82 HOH HOH A . F 5 HOH 119 519 56 HOH HOH A . F 5 HOH 120 520 47 HOH HOH A . F 5 HOH 121 521 153 HOH HOH A . F 5 HOH 122 522 64 HOH HOH A . F 5 HOH 123 523 155 HOH HOH A . F 5 HOH 124 524 145 HOH HOH A . F 5 HOH 125 525 87 HOH HOH A . F 5 HOH 126 526 108 HOH HOH A . F 5 HOH 127 527 84 HOH HOH A . F 5 HOH 128 528 131 HOH HOH A . F 5 HOH 129 529 123 HOH HOH A . F 5 HOH 130 530 69 HOH HOH A . F 5 HOH 131 531 1 HOH HOH A . F 5 HOH 132 532 138 HOH HOH A . F 5 HOH 133 533 96 HOH HOH A . F 5 HOH 134 534 100 HOH HOH A . F 5 HOH 135 535 124 HOH HOH A . F 5 HOH 136 536 97 HOH HOH A . F 5 HOH 137 537 125 HOH HOH A . F 5 HOH 138 538 74 HOH HOH A . F 5 HOH 139 539 85 HOH HOH A . F 5 HOH 140 540 86 HOH HOH A . F 5 HOH 141 541 146 HOH HOH A . F 5 HOH 142 542 114 HOH HOH A . G 5 HOH 1 101 4 HOH HOH B . G 5 HOH 2 102 15 HOH HOH B . G 5 HOH 3 103 90 HOH HOH B . G 5 HOH 4 104 88 HOH HOH B . G 5 HOH 5 105 119 HOH HOH B . G 5 HOH 6 106 105 HOH HOH B . G 5 HOH 7 107 33 HOH HOH B . G 5 HOH 8 108 130 HOH HOH B . G 5 HOH 9 109 127 HOH HOH B . G 5 HOH 10 110 126 HOH HOH B . G 5 HOH 11 111 59 HOH HOH B . G 5 HOH 12 112 109 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DA 18 ? "C5'" ? B DA 18 "C5'" 2 1 Y 1 B DA 18 ? "C4'" ? B DA 18 "C4'" 3 1 Y 1 B DA 18 ? "O4'" ? B DA 18 "O4'" 4 1 Y 1 B DA 18 ? "C3'" ? B DA 18 "C3'" 5 1 Y 1 B DA 18 ? "O3'" ? B DA 18 "O3'" 6 1 Y 1 B DA 18 ? "C2'" ? B DA 18 "C2'" 7 1 Y 1 B DA 18 ? "C1'" ? B DA 18 "C1'" 8 1 Y 1 B DA 18 ? N9 ? B DA 18 N9 9 1 Y 1 B DA 18 ? C8 ? B DA 18 C8 10 1 Y 1 B DA 18 ? N7 ? B DA 18 N7 11 1 Y 1 B DA 18 ? C5 ? B DA 18 C5 12 1 Y 1 B DA 18 ? C6 ? B DA 18 C6 13 1 Y 1 B DA 18 ? N6 ? B DA 18 N6 14 1 Y 1 B DA 18 ? N1 ? B DA 18 N1 15 1 Y 1 B DA 18 ? C2 ? B DA 18 C2 16 1 Y 1 B DA 18 ? N3 ? B DA 18 N3 17 1 Y 1 B DA 18 ? C4 ? B DA 18 C4 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6FK5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 58.940 _cell.length_a_esd ? _cell.length_b 58.940 _cell.length_b_esd ? _cell.length_c 292.260 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6FK5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.64 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 66.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;100 mM imidazole pH = 6.6, 55 mM (NH4)2SO4, 10% (w/v) PEG 8000, 16 - 19 % (v/v) MPD, 2 mM MgCl2 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-02-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.96860 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.96860 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6FK5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.02 _reflns.d_resolution_low 50.43 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 35871 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2 _reflns.pdbx_Rmerge_I_obs 0.0411 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.05812 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.02 _reflns_shell.d_res_low 2.08 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.3141 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.4442 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6FK5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.02 _refine.ls_d_res_low 50.43 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 35681 _refine.ls_number_reflns_R_free 1780 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.36 _refine.ls_percent_reflns_R_free 4.99 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2316 _refine.ls_R_factor_R_free 0.2575 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2303 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2JC4 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.06 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.22 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2061 _refine_hist.pdbx_number_atoms_nucleic_acid 273 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 2498 _refine_hist.d_res_high 2.02 _refine_hist.d_res_low 50.43 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 2429 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.874 ? 3363 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 18.323 ? 1392 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.069 ? 368 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 388 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0061 2.0603 . . 125 2522 98.00 . . . 0.3992 . 0.3783 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0603 2.1210 . . 133 2532 99.00 . . . 0.3232 . 0.3450 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1210 2.1894 . . 134 2574 99.00 . . . 0.3302 . 0.3250 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1894 2.2677 . . 139 2512 98.00 . . . 0.3092 . 0.3209 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2677 2.3585 . . 136 2555 99.00 . . . 0.3223 . 0.3043 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3585 2.4658 . . 126 2570 100.00 . . . 0.3108 . 0.3012 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4658 2.5958 . . 121 2577 100.00 . . . 0.2875 . 0.2929 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5958 2.7584 . . 137 2585 99.00 . . . 0.3123 . 0.2901 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7584 2.9714 . . 153 2588 100.00 . . . 0.2866 . 0.2774 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9714 3.2704 . . 135 2651 100.00 . . . 0.3160 . 0.2573 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2704 3.7435 . . 140 2633 100.00 . . . 0.2437 . 0.2155 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7435 4.7160 . . 156 2691 100.00 . . . 0.2213 . 0.1771 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.7160 54.6815 . . 145 2911 100.00 . . . 0.1916 . 0.1692 . . . . . . . . . . # _struct.entry_id 6FK5 _struct.title ;Structure of 3' phosphatase NExo (D146N) from Neisseria bound to DNA substrate in presence of magnesium ion ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6FK5 _struct_keywords.text ;3' phosphatase, base excision DNA repair, Mg2+, DNA BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP A0A0A8F5K9_NEIME A0A0A8F5K9 ? 1 ;MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHFGL PALPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPE KWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETRA LERPSDHAPVTAEFDW ; 1 2 PDB 6FK5 6FK5 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6FK5 A 3 ? 258 ? A0A0A8F5K9 1 ? 256 ? 1 256 2 2 6FK5 B 1 ? 18 ? 6FK5 1 ? 18 ? 1 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6FK5 GLY A 1 ? UNP A0A0A8F5K9 ? ? 'expression tag' -1 1 1 6FK5 ALA A 2 ? UNP A0A0A8F5K9 ? ? 'expression tag' 0 2 1 6FK5 ASN A 148 ? UNP A0A0A8F5K9 ASP 146 conflict 146 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1890 ? 1 MORE -28 ? 1 'SSA (A^2)' 12490 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 12 ? ASP A 26 ? SER A 10 ASP A 24 1 ? 15 HELX_P HELX_P2 AA2 ASP A 40 ? PHE A 44 ? ASP A 38 PHE A 42 5 ? 5 HELX_P HELX_P3 AA3 PRO A 45 ? MET A 52 ? PRO A 43 MET A 50 1 ? 8 HELX_P HELX_P4 AA4 SER A 116 ? THR A 138 ? SER A 114 THR A 136 1 ? 23 HELX_P HELX_P5 AA5 ALA A 154 ? CYS A 158 ? ALA A 152 CYS A 156 5 ? 5 HELX_P HELX_P6 AA6 SER A 171 ? ASP A 183 ? SER A 169 ASP A 181 1 ? 13 HELX_P HELX_P7 AA7 SER A 189 ? HIS A 194 ? SER A 187 HIS A 192 1 ? 6 HELX_P HELX_P8 AA8 TYR A 205 ? MET A 209 ? TYR A 203 MET A 207 5 ? 5 HELX_P HELX_P9 AA9 SER A 224 ? ALA A 230 ? SER A 222 ALA A 228 1 ? 7 HELX_P HELX_P10 AB1 ASP A 237 ? ALA A 242 ? ASP A 235 ALA A 240 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 36 OE2 ? ? ? 1_555 C MG . MG ? ? A GLU 34 A MG 301 1_555 ? ? ? ? ? ? ? 2.724 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 301 A HOH 502 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 301 B HOH 106 1_555 ? ? ? ? ? ? ? 2.839 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 302 A HOH 509 1_555 ? ? ? ? ? ? ? 2.029 ? ? hydrog1 hydrog ? ? B DC 5 N3 ? ? ? 1_555 B DG 17 N1 ? ? B DC 5 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 5 N4 ? ? ? 1_555 B DG 17 O6 ? ? B DC 5 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 5 O2 ? ? ? 1_555 B DG 17 N2 ? ? B DC 5 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 6 N3 ? ? ? 1_555 B DA 16 N1 ? ? B DT 6 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 6 O4 ? ? ? 1_555 B DA 16 N6 ? ? B DT 6 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 7 N1 ? ? ? 1_555 B DT 15 N3 ? ? B DA 7 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 7 N6 ? ? ? 1_555 B DT 15 O4 ? ? B DA 7 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DC 14 N3 ? ? B DG 8 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DC 14 O2 ? ? B DG 8 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 8 O6 ? ? ? 1_555 B DC 14 N4 ? ? B DG 8 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 9 N3 ? ? ? 1_555 B DG 13 N1 ? ? B DC 9 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 9 N4 ? ? ? 1_555 B DG 13 O6 ? ? B DC 9 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 9 O2 ? ? ? 1_555 B DG 13 N2 ? ? B DC 9 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 10 N3 ? ? ? 1_555 B DA 12 N6 ? ? B DG 10 B DA 12 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 36 ? A GLU 34 ? 1_555 MG ? C MG . ? A MG 301 ? 1_555 O ? F HOH . ? A HOH 502 ? 1_555 75.7 ? 2 OE2 ? A GLU 36 ? A GLU 34 ? 1_555 MG ? C MG . ? A MG 301 ? 1_555 O ? G HOH . ? B HOH 106 ? 1_555 137.7 ? 3 O ? F HOH . ? A HOH 502 ? 1_555 MG ? C MG . ? A MG 301 ? 1_555 O ? G HOH . ? B HOH 106 ? 1_555 62.0 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS A 55 ? SER A 59 ? HIS A 53 SER A 57 AA1 2 VAL A 67 ? SER A 71 ? VAL A 65 SER A 69 AA1 3 ILE A 31 ? GLN A 35 ? ILE A 29 GLN A 33 AA1 4 MET A 3 ? ASN A 9 ? MET A 1 ASN A 7 AA1 5 VAL A 252 ? PHE A 256 ? VAL A 250 PHE A 254 AA1 6 LEU A 231 ? VAL A 236 ? LEU A 229 VAL A 234 AA2 1 GLN A 76 ? PHE A 80 ? GLN A 74 PHE A 78 AA2 2 VAL A 93 ? VAL A 98 ? VAL A 91 VAL A 96 AA2 3 VAL A 101 ? TYR A 107 ? VAL A 99 TYR A 105 AA2 4 LEU A 143 ? ASN A 148 ? LEU A 141 ASN A 146 AA2 5 ASP A 219 ? VAL A 223 ? ASP A 217 VAL A 221 AA2 6 THR A 187 ? ASP A 188 ? THR A 185 ASP A 186 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 55 ? N HIS A 53 O SER A 71 ? O SER A 69 AA1 2 3 O VAL A 70 ? O VAL A 68 N LEU A 32 ? N LEU A 30 AA1 3 4 O ILE A 31 ? O ILE A 29 N THR A 6 ? N THR A 4 AA1 4 5 N MET A 3 ? N MET A 1 O PHE A 256 ? O PHE A 254 AA1 5 6 O GLU A 255 ? O GLU A 253 N LYS A 232 ? N LYS A 230 AA2 1 2 N GLN A 76 ? N GLN A 74 O THR A 97 ? O THR A 95 AA2 2 3 N ILE A 94 ? N ILE A 92 O ASN A 105 ? O ASN A 103 AA2 3 4 N ARG A 102 ? N ARG A 100 O VAL A 144 ? O VAL A 142 AA2 4 5 N LEU A 145 ? N LEU A 143 O LEU A 222 ? O LEU A 220 AA2 5 6 O VAL A 223 ? O VAL A 221 N THR A 187 ? N THR A 185 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 301 ? 6 'binding site for residue MG A 301' AC2 Software A MG 302 ? 2 'binding site for residue MG A 302' AC3 Software A MPD 303 ? 4 'binding site for residue MPD A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASN A 11 ? ASN A 9 . ? 1_555 ? 2 AC1 6 GLU A 36 ? GLU A 34 . ? 1_555 ? 3 AC1 6 ASP A 248 ? ASP A 246 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 502 . ? 1_555 ? 5 AC1 6 DA B 18 ? DA B 18 . ? 1_555 ? 6 AC1 6 HOH G . ? HOH B 106 . ? 1_555 ? 7 AC2 2 ASP A 155 ? ASP A 153 . ? 1_555 ? 8 AC2 2 HOH F . ? HOH A 509 . ? 1_555 ? 9 AC3 4 GLN A 41 ? GLN A 39 . ? 7_555 ? 10 AC3 4 HIS A 55 ? HIS A 53 . ? 1_555 ? 11 AC3 4 SER A 59 ? SER A 57 . ? 7_555 ? 12 AC3 4 HOH F . ? HOH A 402 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DA _pdbx_validate_rmsd_bond.auth_seq_id_1 16 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 17 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.535 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.072 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 9 ? ? 55.22 87.59 2 1 SER A 10 ? ? 72.47 101.66 3 1 ASN A 25 ? ? 36.07 66.46 4 1 THR A 61 ? ? 77.17 -40.10 5 1 ASN A 63 ? ? 56.22 -145.33 6 1 GLU A 110 ? ? 62.67 -70.15 7 1 TYR A 157 ? ? -56.97 -9.60 8 1 ASP A 158 ? ? -165.63 89.00 9 1 HIS A 167 ? ? 83.39 -23.22 10 1 ASP A 186 ? ? -67.58 96.74 11 1 ARG A 243 ? ? 34.54 67.40 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 541 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 B DA 1 ? B DA 1 3 1 Y 1 B DT 2 ? B DT 2 4 1 Y 1 B DG 3 ? B DG 3 5 1 Y 1 B DG 4 ? B DG 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 MG MG MG N N 393 MPD C1 C N N 394 MPD C2 C N N 395 MPD O2 O N N 396 MPD CM C N N 397 MPD C3 C N N 398 MPD C4 C N S 399 MPD O4 O N N 400 MPD C5 C N N 401 MPD H11 H N N 402 MPD H12 H N N 403 MPD H13 H N N 404 MPD HO2 H N N 405 MPD HM1 H N N 406 MPD HM2 H N N 407 MPD HM3 H N N 408 MPD H31 H N N 409 MPD H32 H N N 410 MPD H4 H N N 411 MPD HO4 H N N 412 MPD H51 H N N 413 MPD H52 H N N 414 MPD H53 H N N 415 PHE N N N N 416 PHE CA C N S 417 PHE C C N N 418 PHE O O N N 419 PHE CB C N N 420 PHE CG C Y N 421 PHE CD1 C Y N 422 PHE CD2 C Y N 423 PHE CE1 C Y N 424 PHE CE2 C Y N 425 PHE CZ C Y N 426 PHE OXT O N N 427 PHE H H N N 428 PHE H2 H N N 429 PHE HA H N N 430 PHE HB2 H N N 431 PHE HB3 H N N 432 PHE HD1 H N N 433 PHE HD2 H N N 434 PHE HE1 H N N 435 PHE HE2 H N N 436 PHE HZ H N N 437 PHE HXT H N N 438 PRO N N N N 439 PRO CA C N S 440 PRO C C N N 441 PRO O O N N 442 PRO CB C N N 443 PRO CG C N N 444 PRO CD C N N 445 PRO OXT O N N 446 PRO H H N N 447 PRO HA H N N 448 PRO HB2 H N N 449 PRO HB3 H N N 450 PRO HG2 H N N 451 PRO HG3 H N N 452 PRO HD2 H N N 453 PRO HD3 H N N 454 PRO HXT H N N 455 SER N N N N 456 SER CA C N S 457 SER C C N N 458 SER O O N N 459 SER CB C N N 460 SER OG O N N 461 SER OXT O N N 462 SER H H N N 463 SER H2 H N N 464 SER HA H N N 465 SER HB2 H N N 466 SER HB3 H N N 467 SER HG H N N 468 SER HXT H N N 469 THR N N N N 470 THR CA C N S 471 THR C C N N 472 THR O O N N 473 THR CB C N R 474 THR OG1 O N N 475 THR CG2 C N N 476 THR OXT O N N 477 THR H H N N 478 THR H2 H N N 479 THR HA H N N 480 THR HB H N N 481 THR HG1 H N N 482 THR HG21 H N N 483 THR HG22 H N N 484 THR HG23 H N N 485 THR HXT H N N 486 TRP N N N N 487 TRP CA C N S 488 TRP C C N N 489 TRP O O N N 490 TRP CB C N N 491 TRP CG C Y N 492 TRP CD1 C Y N 493 TRP CD2 C Y N 494 TRP NE1 N Y N 495 TRP CE2 C Y N 496 TRP CE3 C Y N 497 TRP CZ2 C Y N 498 TRP CZ3 C Y N 499 TRP CH2 C Y N 500 TRP OXT O N N 501 TRP H H N N 502 TRP H2 H N N 503 TRP HA H N N 504 TRP HB2 H N N 505 TRP HB3 H N N 506 TRP HD1 H N N 507 TRP HE1 H N N 508 TRP HE3 H N N 509 TRP HZ2 H N N 510 TRP HZ3 H N N 511 TRP HH2 H N N 512 TRP HXT H N N 513 TYR N N N N 514 TYR CA C N S 515 TYR C C N N 516 TYR O O N N 517 TYR CB C N N 518 TYR CG C Y N 519 TYR CD1 C Y N 520 TYR CD2 C Y N 521 TYR CE1 C Y N 522 TYR CE2 C Y N 523 TYR CZ C Y N 524 TYR OH O N N 525 TYR OXT O N N 526 TYR H H N N 527 TYR H2 H N N 528 TYR HA H N N 529 TYR HB2 H N N 530 TYR HB3 H N N 531 TYR HD1 H N N 532 TYR HD2 H N N 533 TYR HE1 H N N 534 TYR HE2 H N N 535 TYR HH H N N 536 TYR HXT H N N 537 VAL N N N N 538 VAL CA C N S 539 VAL C C N N 540 VAL O O N N 541 VAL CB C N N 542 VAL CG1 C N N 543 VAL CG2 C N N 544 VAL OXT O N N 545 VAL H H N N 546 VAL H2 H N N 547 VAL HA H N N 548 VAL HB H N N 549 VAL HG11 H N N 550 VAL HG12 H N N 551 VAL HG13 H N N 552 VAL HG21 H N N 553 VAL HG22 H N N 554 VAL HG23 H N N 555 VAL HXT H N N 556 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 MPD C1 C2 sing N N 386 MPD C1 H11 sing N N 387 MPD C1 H12 sing N N 388 MPD C1 H13 sing N N 389 MPD C2 O2 sing N N 390 MPD C2 CM sing N N 391 MPD C2 C3 sing N N 392 MPD O2 HO2 sing N N 393 MPD CM HM1 sing N N 394 MPD CM HM2 sing N N 395 MPD CM HM3 sing N N 396 MPD C3 C4 sing N N 397 MPD C3 H31 sing N N 398 MPD C3 H32 sing N N 399 MPD C4 O4 sing N N 400 MPD C4 C5 sing N N 401 MPD C4 H4 sing N N 402 MPD O4 HO4 sing N N 403 MPD C5 H51 sing N N 404 MPD C5 H52 sing N N 405 MPD C5 H53 sing N N 406 PHE N CA sing N N 407 PHE N H sing N N 408 PHE N H2 sing N N 409 PHE CA C sing N N 410 PHE CA CB sing N N 411 PHE CA HA sing N N 412 PHE C O doub N N 413 PHE C OXT sing N N 414 PHE CB CG sing N N 415 PHE CB HB2 sing N N 416 PHE CB HB3 sing N N 417 PHE CG CD1 doub Y N 418 PHE CG CD2 sing Y N 419 PHE CD1 CE1 sing Y N 420 PHE CD1 HD1 sing N N 421 PHE CD2 CE2 doub Y N 422 PHE CD2 HD2 sing N N 423 PHE CE1 CZ doub Y N 424 PHE CE1 HE1 sing N N 425 PHE CE2 CZ sing Y N 426 PHE CE2 HE2 sing N N 427 PHE CZ HZ sing N N 428 PHE OXT HXT sing N N 429 PRO N CA sing N N 430 PRO N CD sing N N 431 PRO N H sing N N 432 PRO CA C sing N N 433 PRO CA CB sing N N 434 PRO CA HA sing N N 435 PRO C O doub N N 436 PRO C OXT sing N N 437 PRO CB CG sing N N 438 PRO CB HB2 sing N N 439 PRO CB HB3 sing N N 440 PRO CG CD sing N N 441 PRO CG HG2 sing N N 442 PRO CG HG3 sing N N 443 PRO CD HD2 sing N N 444 PRO CD HD3 sing N N 445 PRO OXT HXT sing N N 446 SER N CA sing N N 447 SER N H sing N N 448 SER N H2 sing N N 449 SER CA C sing N N 450 SER CA CB sing N N 451 SER CA HA sing N N 452 SER C O doub N N 453 SER C OXT sing N N 454 SER CB OG sing N N 455 SER CB HB2 sing N N 456 SER CB HB3 sing N N 457 SER OG HG sing N N 458 SER OXT HXT sing N N 459 THR N CA sing N N 460 THR N H sing N N 461 THR N H2 sing N N 462 THR CA C sing N N 463 THR CA CB sing N N 464 THR CA HA sing N N 465 THR C O doub N N 466 THR C OXT sing N N 467 THR CB OG1 sing N N 468 THR CB CG2 sing N N 469 THR CB HB sing N N 470 THR OG1 HG1 sing N N 471 THR CG2 HG21 sing N N 472 THR CG2 HG22 sing N N 473 THR CG2 HG23 sing N N 474 THR OXT HXT sing N N 475 TRP N CA sing N N 476 TRP N H sing N N 477 TRP N H2 sing N N 478 TRP CA C sing N N 479 TRP CA CB sing N N 480 TRP CA HA sing N N 481 TRP C O doub N N 482 TRP C OXT sing N N 483 TRP CB CG sing N N 484 TRP CB HB2 sing N N 485 TRP CB HB3 sing N N 486 TRP CG CD1 doub Y N 487 TRP CG CD2 sing Y N 488 TRP CD1 NE1 sing Y N 489 TRP CD1 HD1 sing N N 490 TRP CD2 CE2 doub Y N 491 TRP CD2 CE3 sing Y N 492 TRP NE1 CE2 sing Y N 493 TRP NE1 HE1 sing N N 494 TRP CE2 CZ2 sing Y N 495 TRP CE3 CZ3 doub Y N 496 TRP CE3 HE3 sing N N 497 TRP CZ2 CH2 doub Y N 498 TRP CZ2 HZ2 sing N N 499 TRP CZ3 CH2 sing Y N 500 TRP CZ3 HZ3 sing N N 501 TRP CH2 HH2 sing N N 502 TRP OXT HXT sing N N 503 TYR N CA sing N N 504 TYR N H sing N N 505 TYR N H2 sing N N 506 TYR CA C sing N N 507 TYR CA CB sing N N 508 TYR CA HA sing N N 509 TYR C O doub N N 510 TYR C OXT sing N N 511 TYR CB CG sing N N 512 TYR CB HB2 sing N N 513 TYR CB HB3 sing N N 514 TYR CG CD1 doub Y N 515 TYR CG CD2 sing Y N 516 TYR CD1 CE1 sing Y N 517 TYR CD1 HD1 sing N N 518 TYR CD2 CE2 doub Y N 519 TYR CD2 HD2 sing N N 520 TYR CE1 CZ doub Y N 521 TYR CE1 HE1 sing N N 522 TYR CE2 CZ sing Y N 523 TYR CE2 HE2 sing N N 524 TYR CZ OH sing N N 525 TYR OH HH sing N N 526 TYR OXT HXT sing N N 527 VAL N CA sing N N 528 VAL N H sing N N 529 VAL N H2 sing N N 530 VAL CA C sing N N 531 VAL CA CB sing N N 532 VAL CA HA sing N N 533 VAL C O doub N N 534 VAL C OXT sing N N 535 VAL CB CG1 sing N N 536 VAL CB CG2 sing N N 537 VAL CB HB sing N N 538 VAL CG1 HG11 sing N N 539 VAL CG1 HG12 sing N N 540 VAL CG1 HG13 sing N N 541 VAL CG2 HG21 sing N N 542 VAL CG2 HG22 sing N N 543 VAL CG2 HG23 sing N N 544 VAL OXT HXT sing N N 545 # _ndb_struct_conf_na.entry_id 6FK5 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 5 1_555 B DG 17 1_555 0.175 -0.099 0.211 -7.324 -3.163 3.538 1 B_DC5:DG17_B B 5 ? B 17 ? 19 1 1 B DT 6 1_555 B DA 16 1_555 0.021 -0.199 0.443 -5.691 -6.621 5.150 2 B_DT6:DA16_B B 6 ? B 16 ? 20 1 1 B DA 7 1_555 B DT 15 1_555 0.151 -0.180 -0.045 -7.663 -3.868 0.517 3 B_DA7:DT15_B B 7 ? B 15 ? 20 1 1 B DG 8 1_555 B DC 14 1_555 -0.129 -0.108 -0.177 -5.132 4.594 0.553 4 B_DG8:DC14_B B 8 ? B 14 ? 19 1 1 B DC 9 1_555 B DG 13 1_555 0.857 -0.315 -0.420 6.125 9.588 -0.502 5 B_DC9:DG13_B B 9 ? B 13 ? 19 1 1 B DG 10 1_555 B DA 12 1_555 6.463 -3.449 0.012 26.932 14.161 33.633 6 B_DG10:DA12_B B 10 ? B 12 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 5 1_555 B DG 17 1_555 B DT 6 1_555 B DA 16 1_555 -0.150 -0.579 3.331 -2.531 3.761 29.079 -1.954 -0.251 3.233 7.434 5.002 29.423 1 BB_DC5DT6:DA16DG17_BB B 5 ? B 17 ? B 6 ? B 16 ? 1 B DT 6 1_555 B DA 16 1_555 B DA 7 1_555 B DT 15 1_555 -0.517 -0.579 3.088 3.095 12.645 31.354 -2.838 1.338 2.606 22.236 -5.442 33.887 2 BB_DT6DA7:DT15DA16_BB B 6 ? B 16 ? B 7 ? B 15 ? 1 B DA 7 1_555 B DT 15 1_555 B DG 8 1_555 B DC 14 1_555 0.007 -0.586 3.264 -1.407 5.241 32.328 -1.928 -0.251 3.130 9.331 2.505 32.768 3 BB_DA7DG8:DC14DT15_BB B 7 ? B 15 ? B 8 ? B 14 ? 1 B DG 8 1_555 B DC 14 1_555 B DC 9 1_555 B DG 13 1_555 0.716 0.059 3.185 4.666 4.855 35.620 -0.579 -0.503 3.230 7.849 -7.545 36.231 4 BB_DG8DC9:DG13DC14_BB B 8 ? B 14 ? B 9 ? B 13 ? 1 B DC 9 1_555 B DG 13 1_555 B DG 10 1_555 B DA 12 1_555 1.939 1.933 2.921 -0.095 7.780 45.918 1.831 -2.462 3.186 9.888 0.120 46.537 5 BB_DC9DG10:DA12DG13_BB B 9 ? B 13 ? B 10 ? B 12 ? # _pdbx_audit_support.funding_organization 'Wellcome Trust' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number '084369/Z/ 07/Z' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2JC4 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6FK5 _atom_sites.fract_transf_matrix[1][1] 0.016966 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016966 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003422 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_