HEADER TRANSFERASE 05-FEB-18 6FNQ TITLE ERGOTHIONEINE-BIOSYNTHETIC METHYLTRANSFERASE EGTD IN COMPLEX WITH N,N, TITLE 2 N-TRIMETHYLHISTIDINE (HERCYNINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE N-ALPHA-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EGTD; COMPND 5 SYNONYM: HISTIDINE TRIMETHYLTRANSFERASE; COMPND 6 EC: 2.1.1.44; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 GENE: EGTD, ERS451418_06055; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET19M KEYWDS ERGOTHIONEINE, METHYLTRANSFERASE, PRODUCT COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VIT,W.BLANKENFELDT,F.P.SEEBECK REVDAT 3 17-JAN-24 6FNQ 1 LINK REVDAT 2 20-MAR-19 6FNQ 1 HETSYN REVDAT 1 13-JUN-18 6FNQ 0 JRNL AUTH L.MISSON,R.BURN,A.VIT,J.HILDESHEIM,M.A.BELIAEVA, JRNL AUTH 2 W.BLANKENFELDT,F.P.SEEBECK JRNL TITL INHIBITION AND REGULATION OF THE ERGOTHIONEINE BIOSYNTHETIC JRNL TITL 2 METHYLTRANSFERASE EGTD. JRNL REF ACS CHEM. BIOL. V. 13 1333 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29658702 JRNL DOI 10.1021/ACSCHEMBIO.8B00127 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 78253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3524 - 5.3119 1.00 2862 156 0.2162 0.2202 REMARK 3 2 5.3119 - 4.2170 1.00 2750 136 0.1315 0.1602 REMARK 3 3 4.2170 - 3.6841 1.00 2703 155 0.1269 0.1484 REMARK 3 4 3.6841 - 3.3474 1.00 2707 125 0.1253 0.1576 REMARK 3 5 3.3474 - 3.1075 1.00 2681 142 0.1325 0.1544 REMARK 3 6 3.1075 - 2.9243 1.00 2688 135 0.1364 0.1635 REMARK 3 7 2.9243 - 2.7778 1.00 2650 143 0.1411 0.1691 REMARK 3 8 2.7778 - 2.6569 1.00 2646 141 0.1365 0.1839 REMARK 3 9 2.6569 - 2.5547 1.00 2632 152 0.1399 0.1666 REMARK 3 10 2.5547 - 2.4665 1.00 2655 150 0.1409 0.1804 REMARK 3 11 2.4665 - 2.3894 1.00 2662 145 0.1420 0.1717 REMARK 3 12 2.3894 - 2.3211 1.00 2614 145 0.1363 0.1898 REMARK 3 13 2.3211 - 2.2600 1.00 2630 147 0.1368 0.1474 REMARK 3 14 2.2600 - 2.2048 1.00 2665 129 0.1388 0.1736 REMARK 3 15 2.2048 - 2.1547 1.00 2632 144 0.1421 0.1562 REMARK 3 16 2.1547 - 2.1089 1.00 2617 159 0.1423 0.1612 REMARK 3 17 2.1089 - 2.0667 1.00 2646 135 0.1563 0.1805 REMARK 3 18 2.0667 - 2.0277 1.00 2626 124 0.1561 0.1846 REMARK 3 19 2.0277 - 1.9915 1.00 2599 162 0.1625 0.1912 REMARK 3 20 1.9915 - 1.9577 1.00 2671 130 0.1694 0.2014 REMARK 3 21 1.9577 - 1.9261 1.00 2616 125 0.1744 0.2044 REMARK 3 22 1.9261 - 1.8965 1.00 2641 118 0.1844 0.2009 REMARK 3 23 1.8965 - 1.8686 1.00 2615 132 0.1999 0.2324 REMARK 3 24 1.8686 - 1.8423 1.00 2633 152 0.2027 0.2440 REMARK 3 25 1.8423 - 1.8174 1.00 2611 123 0.2206 0.2657 REMARK 3 26 1.8174 - 1.7938 1.00 2657 132 0.2401 0.2597 REMARK 3 27 1.7938 - 1.7714 1.00 2587 138 0.2395 0.2759 REMARK 3 28 1.7714 - 1.7500 1.00 2623 159 0.2442 0.2745 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7043 18.0786 21.3454 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.1323 REMARK 3 T33: 0.1191 T12: 0.0060 REMARK 3 T13: -0.0231 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.3750 L22: 0.9887 REMARK 3 L33: 1.0125 L12: 0.2151 REMARK 3 L13: -0.3230 L23: -0.2394 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: -0.0369 S13: 0.0241 REMARK 3 S21: 0.0386 S22: -0.0425 S23: -0.0291 REMARK 3 S31: 0.0006 S32: 0.0455 S33: -0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0655 30.3599 20.6377 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.2308 REMARK 3 T33: 0.1892 T12: -0.0326 REMARK 3 T13: -0.0475 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 1.2570 L22: 2.0138 REMARK 3 L33: 4.8205 L12: -0.7537 REMARK 3 L13: -0.1434 L23: -0.4121 REMARK 3 S TENSOR REMARK 3 S11: 0.1423 S12: 0.0114 S13: -0.0260 REMARK 3 S21: -0.0109 S22: 0.0006 S23: -0.1568 REMARK 3 S31: 0.1081 S32: 0.4241 S33: -0.1460 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6217 18.1014 17.8443 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.1548 REMARK 3 T33: 0.1225 T12: 0.0082 REMARK 3 T13: -0.0022 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.3721 L22: 1.2853 REMARK 3 L33: 0.8826 L12: 0.0484 REMARK 3 L13: 0.0495 L23: -0.5057 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: 0.0055 S13: -0.0178 REMARK 3 S21: -0.0229 S22: 0.0165 S23: 0.0917 REMARK 3 S31: -0.0278 S32: -0.0851 S33: -0.0569 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0682 -3.4257 13.8948 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.0748 REMARK 3 T33: 0.1383 T12: 0.0167 REMARK 3 T13: -0.0259 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.0442 L22: 0.3386 REMARK 3 L33: 1.1361 L12: 0.0793 REMARK 3 L13: -0.0490 L23: 0.1342 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.1044 S13: -0.1190 REMARK 3 S21: -0.0621 S22: -0.0085 S23: 0.0338 REMARK 3 S31: 0.0309 S32: -0.0237 S33: -0.0086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2970 4.1382 12.4103 REMARK 3 T TENSOR REMARK 3 T11: 0.1572 T22: 0.1525 REMARK 3 T33: 0.1471 T12: -0.0113 REMARK 3 T13: -0.0004 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.6907 L22: 1.6144 REMARK 3 L33: 3.6934 L12: -0.6832 REMARK 3 L13: 0.5537 L23: -0.0843 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.0252 S13: 0.1067 REMARK 3 S21: 0.0282 S22: 0.0314 S23: 0.0290 REMARK 3 S31: -0.0310 S32: -0.0576 S33: -0.0025 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6407 -11.2972 15.9174 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.1034 REMARK 3 T33: 0.2082 T12: 0.0037 REMARK 3 T13: -0.0244 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.7048 L22: 0.5296 REMARK 3 L33: 0.6430 L12: -0.1295 REMARK 3 L13: -0.0796 L23: -0.1502 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: 0.0082 S13: -0.3524 REMARK 3 S21: -0.0662 S22: -0.0120 S23: 0.1186 REMARK 3 S31: 0.1205 S32: -0.0335 S33: -0.0341 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 289 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3741 -12.0943 27.5406 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1993 REMARK 3 T33: 0.1723 T12: 0.0432 REMARK 3 T13: -0.0347 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 3.0963 L22: 2.0980 REMARK 3 L33: 1.5959 L12: -0.4384 REMARK 3 L13: -0.1852 L23: 0.1797 REMARK 3 S TENSOR REMARK 3 S11: -0.0353 S12: -0.1213 S13: -0.2658 REMARK 3 S21: 0.0633 S22: -0.0241 S23: -0.0788 REMARK 3 S31: 0.2548 S32: 0.1380 S33: 0.0141 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FOURIER SYNTHESIS REMARK 4 REMARK 4 6FNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : KMC-1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 49.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 1.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDBID 4PIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (W/V) PEG 8000, 20% (V/V) REMARK 280 GLYCEROL, 0.16 M MG-ACETATE, 0.08 M NA-CACODYLATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.52000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.02250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.68850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.02250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.52000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.68850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 16 CD OE1 OE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLU A 174 CD OE1 OE2 REMARK 470 ARG A 255 CZ NH1 NH2 REMARK 470 GLU A 270 CD OE1 OE2 REMARK 470 GLU A 298 CD OE1 OE2 REMARK 470 ASP B 12 CG OD1 OD2 REMARK 470 GLU B 16 CD OE1 OE2 REMARK 470 ARG B 20 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 540 O HOH A 660 1.75 REMARK 500 O HOH A 805 O HOH A 831 1.85 REMARK 500 O HOH B 563 O HOH B 785 1.89 REMARK 500 O HOH B 709 O HOH B 751 1.94 REMARK 500 O HOH A 855 O HOH A 875 2.01 REMARK 500 O HOH A 611 O HOH A 783 2.05 REMARK 500 O HOH B 768 O HOH B 769 2.06 REMARK 500 OD1 ASP B 207 O HOH B 501 2.06 REMARK 500 O ARG A 321 O HOH A 501 2.10 REMARK 500 O HOH A 758 O HOH B 742 2.11 REMARK 500 O HOH B 685 O HOH B 802 2.11 REMARK 500 O HOH A 626 O HOH A 796 2.11 REMARK 500 O HOH A 637 O HOH A 764 2.12 REMARK 500 O HOH A 662 O HOH A 775 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 896 O HOH B 808 4455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 271 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 VAL A 271 CG1 - CB - CG2 ANGL. DEV. = 21.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 148.42 -170.76 REMARK 500 TYR A 39 50.95 -100.95 REMARK 500 GLU A 144 -33.98 -151.78 REMARK 500 ASP A 207 59.68 -156.38 REMARK 500 TYR B 39 49.14 -101.19 REMARK 500 ASP B 207 67.57 -156.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 181 OD1 REMARK 620 2 ASP A 268 OD1 56.6 REMARK 620 3 HOH A 561 O 57.0 3.2 REMARK 620 4 HOH A 612 O 57.9 2.0 2.0 REMARK 620 5 HOH A 614 O 55.2 1.4 3.4 3.0 REMARK 620 6 HOH A 628 O 58.2 2.3 5.0 3.1 3.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AVJ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AVJ B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 DBREF1 6FNQ A 3 321 UNP A0A0D6J225_MYCSM DBREF2 6FNQ A A0A0D6J225 3 321 DBREF1 6FNQ B 3 321 UNP A0A0D6J225_MYCSM DBREF2 6FNQ B A0A0D6J225 3 321 SEQADV 6FNQ GLY A -1 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNQ HIS A 0 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNQ MET A 1 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNQ ALA A 2 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNQ GLY B -1 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNQ HIS B 0 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNQ MET B 1 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNQ ALA B 2 UNP A0A0D6J22 EXPRESSION TAG SEQRES 1 A 323 GLY HIS MET ALA LEU SER LEU ALA ASN TYR LEU ALA ALA SEQRES 2 A 323 ASP SER ALA ALA GLU ALA LEU ARG ARG ASP VAL ARG ALA SEQRES 3 A 323 GLY LEU THR ALA THR GLN LYS SER LEU PRO PRO LYS TRP SEQRES 4 A 323 PHE TYR ASP ALA VAL GLY SER ASP LEU PHE ASP GLN ILE SEQRES 5 A 323 THR ARG LEU PRO GLU TYR TYR PRO THR ARG THR GLU ALA SEQRES 6 A 323 GLN ILE LEU ARG THR ARG SER ALA GLU ILE ILE SER ALA SEQRES 7 A 323 ALA GLY ALA ASP THR LEU VAL GLU LEU GLY SER GLY THR SEQRES 8 A 323 SER GLU LYS THR ARG MET LEU LEU ASP ALA MET ARG ASP SEQRES 9 A 323 ALA GLU LEU LEU ARG ARG PHE ILE PRO PHE ASP VAL ASP SEQRES 10 A 323 ALA GLY VAL LEU ARG SER ALA GLY ALA ALA ILE GLY ALA SEQRES 11 A 323 GLU TYR PRO GLY ILE GLU ILE ASP ALA VAL CYS GLY ASP SEQRES 12 A 323 PHE GLU GLU HIS LEU GLY LYS ILE PRO HIS VAL GLY ARG SEQRES 13 A 323 ARG LEU VAL VAL PHE LEU GLY SER THR ILE GLY ASN LEU SEQRES 14 A 323 THR PRO ALA PRO ARG ALA GLU PHE LEU SER THR LEU ALA SEQRES 15 A 323 ASP THR LEU GLN PRO GLY ASP SER LEU LEU LEU GLY THR SEQRES 16 A 323 ASP LEU VAL LYS ASP THR GLY ARG LEU VAL ARG ALA TYR SEQRES 17 A 323 ASP ASP ALA ALA GLY VAL THR ALA ALA PHE ASN ARG ASN SEQRES 18 A 323 VAL LEU ALA VAL VAL ASN ARG GLU LEU SER ALA ASP PHE SEQRES 19 A 323 ASP LEU ASP ALA PHE GLU HIS VAL ALA LYS TRP ASN SER SEQRES 20 A 323 ASP GLU GLU ARG ILE GLU MET TRP LEU ARG ALA ARG THR SEQRES 21 A 323 ALA GLN HIS VAL ARG VAL ALA ALA LEU ASP LEU GLU VAL SEQRES 22 A 323 ASP PHE ALA ALA GLY GLU GLU MET LEU THR GLU VAL SER SEQRES 23 A 323 CYS LYS PHE ARG PRO GLU ASN VAL VAL ALA GLU LEU ALA SEQRES 24 A 323 GLU ALA GLY LEU ARG GLN THR HIS TRP TRP THR ASP PRO SEQRES 25 A 323 ALA GLY ASP PHE GLY LEU SER LEU ALA VAL ARG SEQRES 1 B 323 GLY HIS MET ALA LEU SER LEU ALA ASN TYR LEU ALA ALA SEQRES 2 B 323 ASP SER ALA ALA GLU ALA LEU ARG ARG ASP VAL ARG ALA SEQRES 3 B 323 GLY LEU THR ALA THR GLN LYS SER LEU PRO PRO LYS TRP SEQRES 4 B 323 PHE TYR ASP ALA VAL GLY SER ASP LEU PHE ASP GLN ILE SEQRES 5 B 323 THR ARG LEU PRO GLU TYR TYR PRO THR ARG THR GLU ALA SEQRES 6 B 323 GLN ILE LEU ARG THR ARG SER ALA GLU ILE ILE SER ALA SEQRES 7 B 323 ALA GLY ALA ASP THR LEU VAL GLU LEU GLY SER GLY THR SEQRES 8 B 323 SER GLU LYS THR ARG MET LEU LEU ASP ALA MET ARG ASP SEQRES 9 B 323 ALA GLU LEU LEU ARG ARG PHE ILE PRO PHE ASP VAL ASP SEQRES 10 B 323 ALA GLY VAL LEU ARG SER ALA GLY ALA ALA ILE GLY ALA SEQRES 11 B 323 GLU TYR PRO GLY ILE GLU ILE ASP ALA VAL CYS GLY ASP SEQRES 12 B 323 PHE GLU GLU HIS LEU GLY LYS ILE PRO HIS VAL GLY ARG SEQRES 13 B 323 ARG LEU VAL VAL PHE LEU GLY SER THR ILE GLY ASN LEU SEQRES 14 B 323 THR PRO ALA PRO ARG ALA GLU PHE LEU SER THR LEU ALA SEQRES 15 B 323 ASP THR LEU GLN PRO GLY ASP SER LEU LEU LEU GLY THR SEQRES 16 B 323 ASP LEU VAL LYS ASP THR GLY ARG LEU VAL ARG ALA TYR SEQRES 17 B 323 ASP ASP ALA ALA GLY VAL THR ALA ALA PHE ASN ARG ASN SEQRES 18 B 323 VAL LEU ALA VAL VAL ASN ARG GLU LEU SER ALA ASP PHE SEQRES 19 B 323 ASP LEU ASP ALA PHE GLU HIS VAL ALA LYS TRP ASN SER SEQRES 20 B 323 ASP GLU GLU ARG ILE GLU MET TRP LEU ARG ALA ARG THR SEQRES 21 B 323 ALA GLN HIS VAL ARG VAL ALA ALA LEU ASP LEU GLU VAL SEQRES 22 B 323 ASP PHE ALA ALA GLY GLU GLU MET LEU THR GLU VAL SER SEQRES 23 B 323 CYS LYS PHE ARG PRO GLU ASN VAL VAL ALA GLU LEU ALA SEQRES 24 B 323 GLU ALA GLY LEU ARG GLN THR HIS TRP TRP THR ASP PRO SEQRES 25 B 323 ALA GLY ASP PHE GLY LEU SER LEU ALA VAL ARG HET AVJ A 401 29 HET MG A 402 1 HET GOL A 403 14 HET GOL A 404 14 HET GOL A 405 14 HET AVJ B 401 29 HET GOL B 402 14 HET GOL B 403 14 HET GOL B 404 14 HETNAM AVJ N,N,N-TRIMETHYL-HISTIDINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN AVJ HERCYNINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 AVJ 2(C9 H16 N3 O2 1+) FORMUL 4 MG MG 2+ FORMUL 5 GOL 6(C3 H8 O3) FORMUL 12 HOH *732(H2 O) HELIX 1 AA1 ALA A 10 ALA A 28 1 19 HELIX 2 AA2 PRO A 34 TYR A 39 5 6 HELIX 3 AA3 ASP A 40 THR A 51 1 12 HELIX 4 AA4 TYR A 57 GLY A 78 1 22 HELIX 5 AA5 SER A 90 ALA A 103 1 14 HELIX 6 AA6 ASP A 115 TYR A 130 1 16 HELIX 7 AA7 HIS A 145 ILE A 149 5 5 HELIX 8 AA8 SER A 162 LEU A 167 5 6 HELIX 9 AA9 THR A 168 LEU A 183 1 16 HELIX 10 AB1 ASP A 198 TYR A 206 1 9 HELIX 11 AB2 GLY A 211 SER A 229 1 19 HELIX 12 AB3 ASP A 233 ASP A 235 5 3 HELIX 13 AB4 ALA A 265 ASP A 268 5 4 HELIX 14 AB5 ARG A 288 ALA A 299 1 12 HELIX 15 AB6 ASP B 12 ALA B 28 1 17 HELIX 16 AB7 PRO B 34 TYR B 39 5 6 HELIX 17 AB8 ASP B 40 THR B 51 1 12 HELIX 18 AB9 TYR B 57 GLY B 78 1 22 HELIX 19 AC1 SER B 90 ALA B 103 1 14 HELIX 20 AC2 ASP B 115 TYR B 130 1 16 HELIX 21 AC3 ASP B 141 LEU B 146 1 6 HELIX 22 AC4 GLY B 147 ILE B 149 5 3 HELIX 23 AC5 SER B 162 LEU B 167 5 6 HELIX 24 AC6 THR B 168 THR B 182 1 15 HELIX 25 AC7 ASP B 198 TYR B 206 1 9 HELIX 26 AC8 GLY B 211 SER B 229 1 19 HELIX 27 AC9 ASP B 233 ASP B 235 5 3 HELIX 28 AD1 ALA B 265 ASP B 268 5 4 HELIX 29 AD2 ARG B 288 ALA B 299 1 12 SHEET 1 AA1 8 SER A 4 ASN A 7 0 SHEET 2 AA1 8 GLU A 134 CYS A 139 1 O ALA A 137 N SER A 4 SHEET 3 AA1 8 ARG A 108 PHE A 112 1 N PRO A 111 O VAL A 138 SHEET 4 AA1 8 THR A 81 LEU A 85 1 N LEU A 82 O ILE A 110 SHEET 5 AA1 8 ARG A 155 PHE A 159 1 O VAL A 158 N VAL A 83 SHEET 6 AA1 8 SER A 188 ASP A 194 1 O SER A 188 N VAL A 157 SHEET 7 AA1 8 PHE A 314 VAL A 320 -1 O GLY A 315 N THR A 193 SHEET 8 AA1 8 ARG A 302 THR A 308 -1 N ARG A 302 O VAL A 320 SHEET 1 AA2 3 PHE A 237 ASN A 244 0 SHEET 2 AA2 3 ARG A 249 ALA A 256 -1 O ARG A 255 N GLU A 238 SHEET 3 AA2 3 GLU A 278 CYS A 285 -1 O SER A 284 N ILE A 250 SHEET 1 AA3 2 GLN A 260 VAL A 264 0 SHEET 2 AA3 2 LEU A 269 PHE A 273 -1 O LEU A 269 N VAL A 264 SHEET 1 AA4 8 SER B 4 ASN B 7 0 SHEET 2 AA4 8 GLU B 134 CYS B 139 1 O CYS B 139 N ALA B 6 SHEET 3 AA4 8 ARG B 108 PHE B 112 1 N PHE B 109 O GLU B 134 SHEET 4 AA4 8 THR B 81 LEU B 85 1 N LEU B 82 O ILE B 110 SHEET 5 AA4 8 ARG B 155 PHE B 159 1 O LEU B 156 N VAL B 83 SHEET 6 AA4 8 SER B 188 ASP B 194 1 O LEU B 190 N VAL B 157 SHEET 7 AA4 8 PHE B 314 VAL B 320 -1 O GLY B 315 N THR B 193 SHEET 8 AA4 8 ARG B 302 THR B 308 -1 N THR B 304 O LEU B 318 SHEET 1 AA5 3 PHE B 237 ASN B 244 0 SHEET 2 AA5 3 ARG B 249 ALA B 256 -1 O ARG B 255 N GLU B 238 SHEET 3 AA5 3 GLU B 278 CYS B 285 -1 O SER B 284 N ILE B 250 SHEET 1 AA6 2 GLN B 260 VAL B 264 0 SHEET 2 AA6 2 LEU B 269 PHE B 273 -1 O LEU B 269 N VAL B 264 LINK OD1 ASP A 181 MG MG A 402 1555 3555 2.05 LINK OD1 ASP A 268 MG MG A 402 1555 1555 2.04 LINK MG MG A 402 O HOH A 561 1555 3545 2.07 LINK MG MG A 402 O HOH A 612 1555 3545 2.02 LINK MG MG A 402 O HOH A 614 1555 1555 1.97 LINK MG MG A 402 O HOH A 628 1555 3545 2.12 SITE 1 AC1 11 TYR A 39 PHE A 47 TYR A 56 GLY A 161 SITE 2 AC1 11 THR A 163 ASN A 166 TYR A 206 MET A 252 SITE 3 AC1 11 GLU A 282 SER A 284 HOH A 553 SITE 1 AC2 6 ASP A 181 ASP A 268 HOH A 561 HOH A 612 SITE 2 AC2 6 HOH A 614 HOH A 628 SITE 1 AC3 5 ALA A 15 HOH A 517 HOH A 521 HOH A 597 SITE 2 AC3 5 HOH A 638 SITE 1 AC4 7 GLY A 211 ARG A 218 HOH A 504 HOH A 505 SITE 2 AC4 7 HOH A 509 HOH A 551 ASP B 235 SITE 1 AC5 8 SER A 4 ILE A 133 GLU A 134 ILE A 135 SITE 2 AC5 8 ASP A 136 HOH A 582 THR B 308 ASP B 309 SITE 1 AC6 11 TYR B 39 PHE B 47 TYR B 56 GLY B 161 SITE 2 AC6 11 THR B 163 ASN B 166 TYR B 206 MET B 252 SITE 3 AC6 11 GLU B 282 SER B 284 HOH B 579 SITE 1 AC7 7 ASP B 207 GLY B 211 ALA B 214 ARG B 218 SITE 2 AC7 7 HOH B 501 HOH B 508 HOH B 554 SITE 1 AC8 7 ALA B 63 ARG B 67 SER B 90 GLU B 91 SITE 2 AC8 7 LYS B 92 HOH B 503 HOH B 661 SITE 1 AC9 5 ALA B 15 HOH B 535 HOH B 553 HOH B 600 SITE 2 AC9 5 HOH B 652 CRYST1 71.040 79.377 136.045 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007351 0.00000