HEADER TRANSFERASE 05-FEB-18 6FNR TITLE ERGOTHIONEINE-BIOSYNTHETIC METHYLTRANSFERASE EGTD IN COMPLEX WITH TITLE 2 CHLOROHISTIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE N-ALPHA-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EGTD; COMPND 5 SYNONYM: HISTIDINE TRIMETHYLTRANSFERASE; COMPND 6 EC: 2.1.1.44; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 GENE: EGTD, ERS451418_06055; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19M KEYWDS ERGOTHIONEINE, METHYLTRANSFERASE, INHIBITOR COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VIT,W.BLANKENFELDT,F.P.SEEBECK REVDAT 2 17-JAN-24 6FNR 1 LINK REVDAT 1 13-JUN-18 6FNR 0 JRNL AUTH L.MISSON,R.BURN,A.VIT,J.HILDESHEIM,M.A.BELIAEVA, JRNL AUTH 2 W.BLANKENFELDT,F.P.SEEBECK JRNL TITL INHIBITION AND REGULATION OF THE ERGOTHIONEINE BIOSYNTHETIC JRNL TITL 2 METHYLTRANSFERASE EGTD. JRNL REF ACS CHEM. BIOL. V. 13 1333 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29658702 JRNL DOI 10.1021/ACSCHEMBIO.8B00127 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 68609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8171 - 5.3474 1.00 2818 153 0.1801 0.2011 REMARK 3 2 5.3474 - 4.2457 1.00 2690 136 0.1263 0.1609 REMARK 3 3 4.2457 - 3.7094 1.00 2662 151 0.1294 0.1621 REMARK 3 4 3.7094 - 3.3704 1.00 2654 123 0.1347 0.1692 REMARK 3 5 3.3704 - 3.1289 1.00 2620 137 0.1511 0.1642 REMARK 3 6 3.1289 - 2.9445 1.00 2634 122 0.1488 0.1847 REMARK 3 7 2.9445 - 2.7971 1.00 2602 152 0.1630 0.1644 REMARK 3 8 2.7971 - 2.6753 1.00 2627 142 0.1595 0.1842 REMARK 3 9 2.6753 - 2.5723 1.00 2580 150 0.1603 0.1853 REMARK 3 10 2.5723 - 2.4836 1.00 2568 146 0.1572 0.1821 REMARK 3 11 2.4836 - 2.4059 1.00 2628 124 0.1614 0.1863 REMARK 3 12 2.4059 - 2.3372 1.00 2579 157 0.1504 0.1821 REMARK 3 13 2.3372 - 2.2757 1.00 2571 149 0.1525 0.1644 REMARK 3 14 2.2757 - 2.2201 1.00 2590 130 0.1616 0.1843 REMARK 3 15 2.2201 - 2.1697 1.00 2579 132 0.1649 0.1891 REMARK 3 16 2.1697 - 2.1235 1.00 2584 161 0.1638 0.1854 REMARK 3 17 2.1235 - 2.0810 1.00 2577 134 0.1654 0.1829 REMARK 3 18 2.0810 - 2.0417 1.00 2583 122 0.1716 0.1825 REMARK 3 19 2.0417 - 2.0053 1.00 2576 145 0.1758 0.2041 REMARK 3 20 2.0053 - 1.9713 1.00 2568 120 0.1876 0.2539 REMARK 3 21 1.9713 - 1.9395 1.00 2595 146 0.1909 0.2098 REMARK 3 22 1.9395 - 1.9097 1.00 2615 117 0.2027 0.2291 REMARK 3 23 1.9097 - 1.8816 1.00 2573 118 0.2152 0.2467 REMARK 3 24 1.8816 - 1.8551 1.00 2579 137 0.2355 0.2227 REMARK 3 25 1.8551 - 1.8300 0.99 2512 141 0.2591 0.2989 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5098 REMARK 3 ANGLE : 1.010 6933 REMARK 3 CHIRALITY : 0.039 795 REMARK 3 PLANARITY : 0.005 910 REMARK 3 DIHEDRAL : 12.706 1845 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9628 14.7617 26.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.1728 T22: 0.1869 REMARK 3 T33: 0.1780 T12: 0.0038 REMARK 3 T13: -0.0333 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.3955 L22: 1.2410 REMARK 3 L33: 1.0306 L12: 0.1710 REMARK 3 L13: -0.4128 L23: 0.2226 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: -0.0821 S13: 0.0251 REMARK 3 S21: 0.1307 S22: -0.0288 S23: -0.0383 REMARK 3 S31: 0.0276 S32: 0.0565 S33: -0.0171 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8172 29.2300 9.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.2252 REMARK 3 T33: 0.1993 T12: 0.0147 REMARK 3 T13: -0.0089 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.9781 L22: 1.1667 REMARK 3 L33: 1.6070 L12: 0.5082 REMARK 3 L13: -0.3608 L23: 0.5800 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.0511 S13: 0.0168 REMARK 3 S21: 0.0837 S22: -0.0122 S23: -0.2323 REMARK 3 S31: 0.0157 S32: 0.3359 S33: -0.0304 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8697 30.0767 21.0363 REMARK 3 T TENSOR REMARK 3 T11: 0.2268 T22: 0.3109 REMARK 3 T33: 0.2763 T12: -0.0198 REMARK 3 T13: -0.0402 T23: -0.0743 REMARK 3 L TENSOR REMARK 3 L11: 1.1590 L22: 1.2196 REMARK 3 L33: 3.2489 L12: -0.4278 REMARK 3 L13: 0.0680 L23: 0.1728 REMARK 3 S TENSOR REMARK 3 S11: 0.1576 S12: 0.0203 S13: 0.0218 REMARK 3 S21: 0.0496 S22: 0.0824 S23: -0.1858 REMARK 3 S31: 0.0603 S32: 0.4767 S33: -0.2311 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5558 17.9831 17.7834 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1968 REMARK 3 T33: 0.1562 T12: 0.0073 REMARK 3 T13: -0.0061 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4149 L22: 1.0317 REMARK 3 L33: 0.7568 L12: 0.0127 REMARK 3 L13: 0.0323 L23: -0.3465 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0036 S13: -0.0130 REMARK 3 S21: -0.0353 S22: 0.0333 S23: 0.0925 REMARK 3 S31: -0.0374 S32: -0.0967 S33: -0.0550 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7858 -2.9499 14.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.1638 REMARK 3 T33: 0.2097 T12: 0.0109 REMARK 3 T13: -0.0340 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.4443 L22: 0.2499 REMARK 3 L33: 0.8455 L12: -0.1318 REMARK 3 L13: -0.1221 L23: 0.1042 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0735 S13: -0.0731 REMARK 3 S21: -0.0790 S22: -0.0180 S23: 0.0609 REMARK 3 S31: 0.0267 S32: 0.0084 S33: 0.0438 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2298 5.4302 16.5057 REMARK 3 T TENSOR REMARK 3 T11: 0.1996 T22: 0.1975 REMARK 3 T33: 0.1891 T12: 0.0061 REMARK 3 T13: -0.0284 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.2150 L22: 1.6618 REMARK 3 L33: 2.2675 L12: 0.1650 REMARK 3 L13: 0.2777 L23: 0.2342 REMARK 3 S TENSOR REMARK 3 S11: -0.1477 S12: 0.0706 S13: 0.2323 REMARK 3 S21: 0.0736 S22: 0.1046 S23: 0.0271 REMARK 3 S31: -0.1400 S32: 0.0563 S33: 0.0359 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0080 4.5505 7.4917 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.2147 REMARK 3 T33: 0.1854 T12: -0.0173 REMARK 3 T13: -0.0124 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 1.3955 L22: 0.8560 REMARK 3 L33: 1.3689 L12: -0.6119 REMARK 3 L13: 0.1715 L23: 0.8020 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.0121 S13: 0.0555 REMARK 3 S21: 0.1193 S22: -0.0275 S23: 0.0369 REMARK 3 S31: 0.0826 S32: -0.1409 S33: -0.0124 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7547 -7.2124 14.0535 REMARK 3 T TENSOR REMARK 3 T11: 0.2473 T22: 0.1804 REMARK 3 T33: 0.2194 T12: 0.0277 REMARK 3 T13: -0.0336 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.7425 L22: 1.5435 REMARK 3 L33: 1.4230 L12: 0.7847 REMARK 3 L13: -0.6146 L23: -0.0129 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: -0.0439 S13: -0.3081 REMARK 3 S21: -0.0695 S22: -0.1006 S23: -0.0108 REMARK 3 S31: 0.0616 S32: 0.1291 S33: 0.0283 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3407 -12.2904 16.4614 REMARK 3 T TENSOR REMARK 3 T11: 0.2409 T22: 0.1461 REMARK 3 T33: 0.2927 T12: -0.0083 REMARK 3 T13: -0.0415 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.7467 L22: 0.5180 REMARK 3 L33: 0.7720 L12: -0.2657 REMARK 3 L13: -0.0272 L23: -0.1398 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: 0.0058 S13: -0.4301 REMARK 3 S21: -0.1000 S22: -0.0042 S23: 0.1536 REMARK 3 S31: 0.2164 S32: -0.0900 S33: -0.0406 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 289 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3852 -11.9610 27.7252 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.2127 REMARK 3 T33: 0.2024 T12: 0.0525 REMARK 3 T13: -0.0319 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 2.2237 L22: 2.1403 REMARK 3 L33: 1.4019 L12: -0.3050 REMARK 3 L13: 0.0654 L23: 0.0576 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: -0.1438 S13: -0.3220 REMARK 3 S21: 0.0011 S22: -0.0882 S23: -0.1712 REMARK 3 S31: 0.2281 S32: 0.2368 S33: 0.0829 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FOURIER SYNTHESIS REMARK 4 REMARK 4 6FNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : KMC-1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71952 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 1.26500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDBID 4PIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (W/V) PEG 8000, 20% (V/V) REMARK 280 GLYCEROL, 0.16 M MG-ACETATE, 0.08 M NA-CACODYLATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.57650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.15800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.60550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.15800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.57650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.60550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 VAL A 42 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 16 CD OE1 OE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 GLU A 298 CD OE1 OE2 REMARK 470 ASP B 12 CG OD1 OD2 REMARK 470 GLU B 16 CD OE1 OE2 REMARK 470 SER B 87 OG REMARK 470 GLU B 91 CD OE1 OE2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 GLU B 174 CD OE1 OE2 REMARK 470 GLU B 298 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 617 O HOH B 678 1.98 REMARK 500 O HOH A 620 O HOH A 742 2.01 REMARK 500 O HOH A 736 O HOH A 770 2.03 REMARK 500 O HOH B 549 O HOH B 619 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 714 O HOH B 687 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 39 51.17 -102.14 REMARK 500 GLU A 144 -38.06 -167.21 REMARK 500 ASP A 207 62.21 -156.15 REMARK 500 TYR B 39 50.53 -102.63 REMARK 500 ASP B 207 68.13 -152.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 181 OD1 REMARK 620 2 ASP A 268 OD1 57.9 REMARK 620 3 HOH A 532 O 58.2 3.3 REMARK 620 4 HOH A 564 O 59.2 2.0 2.1 REMARK 620 5 HOH A 614 O 59.6 2.4 5.2 3.2 REMARK 620 6 HOH A 619 O 56.4 1.5 3.5 3.0 3.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DYT B 402 DBREF1 6FNR A 3 321 UNP A0A0D6J225_MYCSM DBREF2 6FNR A A0A0D6J225 3 321 DBREF1 6FNR B 3 321 UNP A0A0D6J225_MYCSM DBREF2 6FNR B A0A0D6J225 3 321 SEQADV 6FNR GLY A -1 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNR HIS A 0 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNR MET A 1 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNR ALA A 2 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNR GLY B -1 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNR HIS B 0 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNR MET B 1 UNP A0A0D6J22 EXPRESSION TAG SEQADV 6FNR ALA B 2 UNP A0A0D6J22 EXPRESSION TAG SEQRES 1 A 323 GLY HIS MET ALA LEU SER LEU ALA ASN TYR LEU ALA ALA SEQRES 2 A 323 ASP SER ALA ALA GLU ALA LEU ARG ARG ASP VAL ARG ALA SEQRES 3 A 323 GLY LEU THR ALA THR GLN LYS SER LEU PRO PRO LYS TRP SEQRES 4 A 323 PHE TYR ASP ALA VAL GLY SER ASP LEU PHE ASP GLN ILE SEQRES 5 A 323 THR ARG LEU PRO GLU TYR TYR PRO THR ARG THR GLU ALA SEQRES 6 A 323 GLN ILE LEU ARG THR ARG SER ALA GLU ILE ILE SER ALA SEQRES 7 A 323 ALA GLY ALA ASP THR LEU VAL GLU LEU GLY SER GLY THR SEQRES 8 A 323 SER GLU LYS THR ARG MET LEU LEU ASP ALA MET ARG ASP SEQRES 9 A 323 ALA GLU LEU LEU ARG ARG PHE ILE PRO PHE ASP VAL ASP SEQRES 10 A 323 ALA GLY VAL LEU ARG SER ALA GLY ALA ALA ILE GLY ALA SEQRES 11 A 323 GLU TYR PRO GLY ILE GLU ILE ASP ALA VAL CYS GLY ASP SEQRES 12 A 323 PHE GLU GLU HIS LEU GLY LYS ILE PRO HIS VAL GLY ARG SEQRES 13 A 323 ARG LEU VAL VAL PHE LEU GLY SER THR ILE GLY ASN LEU SEQRES 14 A 323 THR PRO ALA PRO ARG ALA GLU PHE LEU SER THR LEU ALA SEQRES 15 A 323 ASP THR LEU GLN PRO GLY ASP SER LEU LEU LEU GLY THR SEQRES 16 A 323 ASP LEU VAL LYS ASP THR GLY ARG LEU VAL ARG ALA TYR SEQRES 17 A 323 ASP ASP ALA ALA GLY VAL THR ALA ALA PHE ASN ARG ASN SEQRES 18 A 323 VAL LEU ALA VAL VAL ASN ARG GLU LEU SER ALA ASP PHE SEQRES 19 A 323 ASP LEU ASP ALA PHE GLU HIS VAL ALA LYS TRP ASN SER SEQRES 20 A 323 ASP GLU GLU ARG ILE GLU MET TRP LEU ARG ALA ARG THR SEQRES 21 A 323 ALA GLN HIS VAL ARG VAL ALA ALA LEU ASP LEU GLU VAL SEQRES 22 A 323 ASP PHE ALA ALA GLY GLU GLU MET LEU THR GLU VAL SER SEQRES 23 A 323 CYS LYS PHE ARG PRO GLU ASN VAL VAL ALA GLU LEU ALA SEQRES 24 A 323 GLU ALA GLY LEU ARG GLN THR HIS TRP TRP THR ASP PRO SEQRES 25 A 323 ALA GLY ASP PHE GLY LEU SER LEU ALA VAL ARG SEQRES 1 B 323 GLY HIS MET ALA LEU SER LEU ALA ASN TYR LEU ALA ALA SEQRES 2 B 323 ASP SER ALA ALA GLU ALA LEU ARG ARG ASP VAL ARG ALA SEQRES 3 B 323 GLY LEU THR ALA THR GLN LYS SER LEU PRO PRO LYS TRP SEQRES 4 B 323 PHE TYR ASP ALA VAL GLY SER ASP LEU PHE ASP GLN ILE SEQRES 5 B 323 THR ARG LEU PRO GLU TYR TYR PRO THR ARG THR GLU ALA SEQRES 6 B 323 GLN ILE LEU ARG THR ARG SER ALA GLU ILE ILE SER ALA SEQRES 7 B 323 ALA GLY ALA ASP THR LEU VAL GLU LEU GLY SER GLY THR SEQRES 8 B 323 SER GLU LYS THR ARG MET LEU LEU ASP ALA MET ARG ASP SEQRES 9 B 323 ALA GLU LEU LEU ARG ARG PHE ILE PRO PHE ASP VAL ASP SEQRES 10 B 323 ALA GLY VAL LEU ARG SER ALA GLY ALA ALA ILE GLY ALA SEQRES 11 B 323 GLU TYR PRO GLY ILE GLU ILE ASP ALA VAL CYS GLY ASP SEQRES 12 B 323 PHE GLU GLU HIS LEU GLY LYS ILE PRO HIS VAL GLY ARG SEQRES 13 B 323 ARG LEU VAL VAL PHE LEU GLY SER THR ILE GLY ASN LEU SEQRES 14 B 323 THR PRO ALA PRO ARG ALA GLU PHE LEU SER THR LEU ALA SEQRES 15 B 323 ASP THR LEU GLN PRO GLY ASP SER LEU LEU LEU GLY THR SEQRES 16 B 323 ASP LEU VAL LYS ASP THR GLY ARG LEU VAL ARG ALA TYR SEQRES 17 B 323 ASP ASP ALA ALA GLY VAL THR ALA ALA PHE ASN ARG ASN SEQRES 18 B 323 VAL LEU ALA VAL VAL ASN ARG GLU LEU SER ALA ASP PHE SEQRES 19 B 323 ASP LEU ASP ALA PHE GLU HIS VAL ALA LYS TRP ASN SER SEQRES 20 B 323 ASP GLU GLU ARG ILE GLU MET TRP LEU ARG ALA ARG THR SEQRES 21 B 323 ALA GLN HIS VAL ARG VAL ALA ALA LEU ASP LEU GLU VAL SEQRES 22 B 323 ASP PHE ALA ALA GLY GLU GLU MET LEU THR GLU VAL SER SEQRES 23 B 323 CYS LYS PHE ARG PRO GLU ASN VAL VAL ALA GLU LEU ALA SEQRES 24 B 323 GLU ALA GLY LEU ARG GLN THR HIS TRP TRP THR ASP PRO SEQRES 25 B 323 ALA GLY ASP PHE GLY LEU SER LEU ALA VAL ARG HET MG A 401 1 HET GOL A 402 14 HET DYT A 403 17 HET PG4 A 404 31 HET GOL B 401 14 HET DYT B 402 17 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM DYT (2~{S})-2-CHLORANYL-3-(1~{H}-IMIDAZOL-5-YL)PROPANOIC HETNAM 2 DYT ACID HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG MG 2+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 DYT 2(C6 H7 CL N2 O2) FORMUL 6 PG4 C8 H18 O5 FORMUL 9 HOH *525(H2 O) HELIX 1 AA1 ALA A 10 ALA A 28 1 19 HELIX 2 AA2 PRO A 34 TYR A 39 5 6 HELIX 3 AA3 ASP A 40 ALA A 41 5 2 HELIX 4 AA4 GLY A 43 GLY A 43 5 1 HELIX 5 AA5 SER A 44 THR A 51 1 8 HELIX 6 AA6 TYR A 57 GLY A 78 1 22 HELIX 7 AA7 SER A 90 ALA A 103 1 14 HELIX 8 AA8 ASP A 115 TYR A 130 1 16 HELIX 9 AA9 HIS A 145 ILE A 149 5 5 HELIX 10 AB1 SER A 162 LEU A 167 5 6 HELIX 11 AB2 THR A 168 ASP A 181 1 14 HELIX 12 AB3 ASP A 198 TYR A 206 1 9 HELIX 13 AB4 GLY A 211 SER A 229 1 19 HELIX 14 AB5 ASP A 233 ASP A 235 5 3 HELIX 15 AB6 ALA A 265 ASP A 268 5 4 HELIX 16 AB7 ARG A 288 ALA A 299 1 12 HELIX 17 AB8 ASP B 12 ALA B 28 1 17 HELIX 18 AB9 PRO B 34 TYR B 39 5 6 HELIX 19 AC1 ASP B 40 THR B 51 1 12 HELIX 20 AC2 TYR B 57 GLY B 78 1 22 HELIX 21 AC3 SER B 90 ALA B 103 1 14 HELIX 22 AC4 ASP B 115 TYR B 130 1 16 HELIX 23 AC5 HIS B 145 ILE B 149 5 5 HELIX 24 AC6 SER B 162 LEU B 167 5 6 HELIX 25 AC7 THR B 168 THR B 182 1 15 HELIX 26 AC8 ASP B 198 TYR B 206 1 9 HELIX 27 AC9 GLY B 211 SER B 229 1 19 HELIX 28 AD1 ASP B 233 ASP B 235 5 3 HELIX 29 AD2 ALA B 265 ASP B 268 5 4 HELIX 30 AD3 ARG B 288 GLY B 300 1 13 SHEET 1 AA1 8 SER A 4 ASN A 7 0 SHEET 2 AA1 8 GLU A 134 CYS A 139 1 O CYS A 139 N ALA A 6 SHEET 3 AA1 8 ARG A 108 PHE A 112 1 N PHE A 109 O GLU A 134 SHEET 4 AA1 8 THR A 81 LEU A 85 1 N LEU A 82 O ILE A 110 SHEET 5 AA1 8 ARG A 155 PHE A 159 1 O LEU A 156 N VAL A 83 SHEET 6 AA1 8 SER A 188 ASP A 194 1 O LEU A 190 N VAL A 157 SHEET 7 AA1 8 PHE A 314 VAL A 320 -1 O ALA A 319 N LEU A 189 SHEET 8 AA1 8 ARG A 302 THR A 308 -1 N ARG A 302 O VAL A 320 SHEET 1 AA2 3 PHE A 237 ASN A 244 0 SHEET 2 AA2 3 ARG A 249 ALA A 256 -1 O ARG A 255 N GLU A 238 SHEET 3 AA2 3 GLU A 278 CYS A 285 -1 O SER A 284 N ILE A 250 SHEET 1 AA3 2 GLN A 260 VAL A 264 0 SHEET 2 AA3 2 LEU A 269 PHE A 273 -1 O LEU A 269 N VAL A 264 SHEET 1 AA4 8 SER B 4 ASN B 7 0 SHEET 2 AA4 8 GLU B 134 CYS B 139 1 O CYS B 139 N ALA B 6 SHEET 3 AA4 8 ARG B 108 PHE B 112 1 N PHE B 109 O GLU B 134 SHEET 4 AA4 8 THR B 81 LEU B 85 1 N LEU B 82 O ILE B 110 SHEET 5 AA4 8 ARG B 155 PHE B 159 1 O VAL B 158 N VAL B 83 SHEET 6 AA4 8 SER B 188 ASP B 194 1 O LEU B 190 N VAL B 157 SHEET 7 AA4 8 PHE B 314 VAL B 320 -1 O GLY B 315 N THR B 193 SHEET 8 AA4 8 ARG B 302 THR B 308 -1 N THR B 304 O LEU B 318 SHEET 1 AA5 3 PHE B 237 ASN B 244 0 SHEET 2 AA5 3 ARG B 249 ALA B 256 -1 O ARG B 255 N GLU B 238 SHEET 3 AA5 3 GLU B 278 CYS B 285 -1 O GLU B 282 N MET B 252 SHEET 1 AA6 2 GLN B 260 VAL B 264 0 SHEET 2 AA6 2 LEU B 269 PHE B 273 -1 O LEU B 269 N VAL B 264 LINK OD1 ASP A 181 MG MG A 401 1555 3555 2.01 LINK OD1 ASP A 268 MG MG A 401 1555 1555 2.05 LINK MG MG A 401 O HOH A 532 1555 3545 2.15 LINK MG MG A 401 O HOH A 564 1555 3545 2.11 LINK MG MG A 401 O HOH A 614 1555 3545 2.18 LINK MG MG A 401 O HOH A 619 1555 1555 2.10 SITE 1 AC1 6 ASP A 181 ASP A 268 HOH A 532 HOH A 564 SITE 2 AC1 6 HOH A 614 HOH A 619 SITE 1 AC2 5 ALA A 15 HOH A 515 HOH A 518 HOH A 525 SITE 2 AC2 5 HOH A 569 SITE 1 AC3 7 TYR A 39 TYR A 56 TYR A 206 GLU A 282 SITE 2 AC3 7 SER A 284 HOH A 522 HOH A 554 SITE 1 AC4 15 ASP A 208 ALA A 209 GLY A 211 ALA A 215 SITE 2 AC4 15 ARG A 218 HOH A 501 HOH A 516 HOH A 588 SITE 3 AC4 15 HOH A 607 HOH A 682 GLY B 211 ALA B 215 SITE 4 AC4 15 ARG B 218 LEU B 234 HOH B 509 SITE 1 AC5 3 ALA B 15 HOH B 531 HOH B 555 SITE 1 AC6 8 TYR B 39 TYR B 56 ASN B 166 TYR B 206 SITE 2 AC6 8 GLU B 282 SER B 284 HOH B 532 HOH B 552 CRYST1 71.153 79.211 136.316 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007336 0.00000