data_6FO4 # _entry.id 6FO4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.344 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6FO4 WWPDB D_1200008645 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2019-03-20 _pdbx_database_PDB_obs_spr.pdb_id NONE _pdbx_database_PDB_obs_spr.replace_pdb_id 6FO4 _pdbx_database_PDB_obs_spr.details 'Obsoletion upon authors request, no superseding entry' # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'neutron structure at atomic resolution of reduced iron Pf rubredoxin (100K)' 5NVT unspecified PDB 'x-ray structure at atomic resolution of reduced Pf rubredoxin (100K)' 5OME unspecified PDB 'x-ray structure at atomic resolution of oxidised Pf rubredoxin (100K)' 5NW3 unspecified PDB 'Near-atomic resolution neutron crystallography on the oxidised form perdeuterated Pyrococcus furiosus rubredoxin (295K)' 4AR3 unspecified PDB ;Neutron crystallographic structure of the reduced form perdeuterated Pyrococcus furiosus rubredoxin to 1.38 Angstrom resolution (295K) ; 4AR4 unspecified PDB ;X-ray crystallographic structure of the oxidised form perdeuterated Pyrococcus furiosus rubredoxin in D2O at 295K (in quartz capillary) to 1.00 Angstrom resolution. ; 4AR5 unspecified PDB ;X-ray crystallographic structure of the reduced form perdeuterated Pyrococcus furiosus rubredoxin at 295 K (in quartz capillary) to 0.92 Angstroms resolution. ; 4AR6 unspecified PDB ;Anomalous Neutron phased crystal structure of 113Cd-substituted Perdeuterated Pyrococcus furiosus rubredoxin to 1.75A resolution at 295K ; 5AI2 unspecified PDB 'X-ray structure of 113Cd-substituted Perdeuterated Pyrococcus furiosus rubredoxin to 1.02A resolution at 295K in a quartz capillary' 5AI3 unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6FO4 _pdbx_database_status.recvd_initial_deposition_date 2018-02-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cuypers, M.G.' 1 0000-0002-8826-2317 'Mason, S.A.' 2 ? 'Mossou, E.' 3 ? 'Devos, J.' 4 ? 'Haertlein, M.' 5 ? 'Mitchell, E.' 6 ? 'Forsyth, V.T.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;The cryofrozen atomic resolution neutron crystal structure of the reduced form perdeuterated Pyrococcus furiosus Rubredoxin (100K, 0.94A resolution) shows Hydroniums and Zundel cations networks. ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cuypers, M.G.' 1 ? primary 'Mason, S.A.' 2 ? primary 'Mossou, E.' 3 ? primary 'Devos, J.' 4 ? primary 'Haertlein, M.' 5 ? primary 'Mitchell, E.' 6 ? primary 'Forsyth, V.T.' 7 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6FO4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 33.900 _cell.length_a_esd ? _cell.length_b 34.750 _cell.length_b_esd ? _cell.length_c 43.240 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6FO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Rubredoxin 6031.728 1 ? ? ? 'perdeuterated in D2O' 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 non-polymer syn trideuteriooxidanium 22.042 9 ? ? ? ? 4 non-polymer syn 'deuterium(1+)' 2.014 14 ? ? ? ? 5 water nat water 18.015 131 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Rd # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_seq_one_letter_code_can MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 TRP n 1 5 VAL n 1 6 CYS n 1 7 LYS n 1 8 ILE n 1 9 CYS n 1 10 GLY n 1 11 TYR n 1 12 ILE n 1 13 TYR n 1 14 ASP n 1 15 GLU n 1 16 ASP n 1 17 ALA n 1 18 GLY n 1 19 ASP n 1 20 PRO n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 ILE n 1 25 SER n 1 26 PRO n 1 27 GLY n 1 28 THR n 1 29 LYS n 1 30 PHE n 1 31 GLU n 1 32 GLU n 1 33 LEU n 1 34 PRO n 1 35 ASP n 1 36 ASP n 1 37 TRP n 1 38 VAL n 1 39 CYS n 1 40 PRO n 1 41 ILE n 1 42 CYS n 1 43 GLY n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 SER n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 LYS n 1 52 LEU n 1 53 GLU n 1 54 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 54 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rub, PF1282' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 43587 / DSM 3638 / JCM 8422 / Vc1' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 186497 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 43587 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET28 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_PYRFU _struct_ref.pdbx_db_accession P24297 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MAKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6FO4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 54 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P24297 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 54 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 53 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 D3O non-polymer . trideuteriooxidanium 'perdeuterated oxonium' 'D3 O 1' 22.042 D8U non-polymer . 'deuterium(1+)' ? 'D 1' 2.014 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6FO4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'NEUTRON DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.4 _exptl_crystal.description '4.5 mm^3 volume square bipyramid, reduced form is transparent.' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details 'controlled temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '3.4M EQUIMOLAR NA/K PHOSPHATE BUFFER, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details 'calibrated cryostream' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'BORON CARBIDE BEAM DEFINING APERTURES, DETECTOR= 5ATM 3HE CURVED 120X30 DEGREES (IGNORE PILATUS AS FORCED TO ENTER FOR SUBMISSION)' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 300K' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-07-30 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'PYROLYTIC GRAPHITE (002)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type neutron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.46 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'NUCLEAR REACTOR' _diffrn_source.target ? _diffrn_source.type 'ILL BEAMLINE D19' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.46 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline D19 _diffrn_source.pdbx_synchrotron_site ILL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6FO4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.94 _reflns.d_resolution_low 27.09 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29669 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 87.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.3 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.078 _reflns.pdbx_Rpim_I_all 0.044 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 0.94 0.99 ? 1.5 ? ? ? ? 7015 76.0 ? ? ? ? 0.415 ? ? ? ? ? ? ? ? 1.9 ? ? ? ? 0.529 0.317 ? 1 1 0.763 ? 2.97 27.09 ? 28.0 ? ? ? ? 1181 99.1 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 4.5 ? ? ? ? 0.038 0.017 ? 2 1 0.999 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ;All atoms Anisotropic except protein atoms from residue Pro44 (2 conformations). Shared occupancy for one D atoms of 2 D3O+ (hydroniums). Zundel cations [D2O_D_OD2]+ are refined unrestrainted with central D atom as D8U Deuterium atom. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6FO4 _refine.pdbx_refine_id 'NEUTRON DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.940 _refine.ls_d_res_low 18.357 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29615 _refine.ls_number_reflns_R_free 1465 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.35 _refine.ls_percent_reflns_R_free 4.95 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1335 _refine.ls_R_factor_R_free 0.1701 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1316 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5NVT _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.63 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.12 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'NEUTRON DIFFRACTION' ? 0.005 ? 1107 ? f_bond_d ? ? 'NEUTRON DIFFRACTION' ? 1.290 ? 1806 ? f_angle_d ? ? 'NEUTRON DIFFRACTION' ? 16.192 ? 250 ? f_dihedral_angle_d ? ? 'NEUTRON DIFFRACTION' ? 0.073 ? 61 ? f_chiral_restr ? ? 'NEUTRON DIFFRACTION' ? 0.010 ? 187 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'NEUTRON DIFFRACTION' 0.9400 0.9736 . . 125 2358 75.00 . . . 0.3801 . 0.3658 . . . . . . . . . . 'NEUTRON DIFFRACTION' 0.9736 1.0126 . . 147 2437 78.00 . . . 0.3558 . 0.3058 . . . . . . . . . . 'NEUTRON DIFFRACTION' 1.0126 1.0587 . . 120 2555 80.00 . . . 0.2178 . 0.1807 . . . . . . . . . . 'NEUTRON DIFFRACTION' 1.0587 1.1145 . . 140 2627 83.00 . . . 0.2079 . 0.1652 . . . . . . . . . . 'NEUTRON DIFFRACTION' 1.1145 1.1843 . . 153 2769 86.00 . . . 0.1435 . 0.1029 . . . . . . . . . . 'NEUTRON DIFFRACTION' 1.1843 1.2757 . . 138 2831 88.00 . . . 0.1753 . 0.1099 . . . . . . . . . . 'NEUTRON DIFFRACTION' 1.2757 1.4040 . . 138 2913 91.00 . . . 0.1643 . 0.1062 . . . . . . . . . . 'NEUTRON DIFFRACTION' 1.4040 1.6071 . . 161 3071 95.00 . . . 0.1615 . 0.1146 . . . . . . . . . . 'NEUTRON DIFFRACTION' 1.6071 2.0244 . . 163 3206 98.00 . . . 0.1268 . 0.0982 . . . . . . . . . . 'NEUTRON DIFFRACTION' 2.0244 18.3606 . . 180 3383 99.00 . . . 0.1401 . 0.1192 . . . . . . . . . . # _struct.entry_id 6FO4 _struct.title ;The cryofrozen atomic resolution neutron crystal structure of the reduced form perdeuterated Pyrococcus furiosus Rubredoxin (100K, 0.94A resolution) shows Hydroniums and Zundel cations networks. ; _struct.pdbx_descriptor Rubredoxin _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6FO4 _struct_keywords.text ;Perdeuterated, rubredoxin, pyrococcus furiosus, atomic resolution, Cryostream frozen crystal, Zundel cation, [H5O2]+, Hydronium, D3O, Eigen cation, ELECTRON TRANSPORT., ELECTRON TRANSPORT ; _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 4 ? Y N N 4 ? Z N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 19 ? GLY A 23 ? ASP A 18 GLY A 22 5 ? 5 HELX_P HELX_P2 AA2 LYS A 29 ? LEU A 33 ? LYS A 28 LEU A 32 5 ? 5 HELX_P HELX_P3 AA3 PRO A 45 ? SER A 47 ? PRO A 44 SER A 46 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 6 SG ? ? ? 1_555 B FE . FE ? ? A CYS 5 A FE 101 1_555 ? ? ? ? ? ? ? 2.329 ? ? metalc2 metalc ? ? A CYS 9 SG ? ? ? 1_555 B FE . FE ? ? A CYS 8 A FE 101 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc3 metalc ? ? A CYS 39 SG ? ? ? 1_555 B FE . FE ? ? A CYS 38 A FE 101 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc4 metalc ? ? A CYS 42 SG ? ? ? 1_555 B FE . FE ? ? A CYS 41 A FE 101 1_555 ? ? ? ? ? ? ? 2.295 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 12 ? ASP A 14 ? ILE A 11 ASP A 13 AA1 2 LYS A 3 ? CYS A 6 ? LYS A 2 CYS A 5 AA1 3 PHE A 49 ? LYS A 51 ? PHE A 48 LYS A 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 13 ? O TYR A 12 N TRP A 4 ? N TRP A 3 AA1 2 3 N VAL A 5 ? N VAL A 4 O GLU A 50 ? O GLU A 49 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FE 101 ? 4 'binding site for residue FE A 101' AC2 Software A D3O 102 ? 2 'binding site for residue D3O A 102' AC3 Software A D3O 103 ? 2 'binding site for residue D3O A 103' AC4 Software A D3O 104 ? 4 'binding site for residue D3O A 104' AC5 Software A D3O 105 ? 5 'binding site for residue D3O A 105' AC6 Software A D3O 106 ? 5 'binding site for residue D3O A 106' AC7 Software A D3O 107 ? 4 'binding site for residue D3O A 107' AC8 Software A D3O 108 ? 3 'binding site for residue D3O A 108' AC9 Software A D3O 109 ? 4 'binding site for residue D3O A 109' AD1 Software A D3O 110 ? 5 'binding site for residue D3O A 110' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 6 ? CYS A 5 . ? 1_555 ? 2 AC1 4 CYS A 9 ? CYS A 8 . ? 1_555 ? 3 AC1 4 CYS A 39 ? CYS A 38 . ? 1_555 ? 4 AC1 4 CYS A 42 ? CYS A 41 . ? 1_555 ? 5 AC2 2 SER A 25 ? SER A 24 . ? 1_555 ? 6 AC2 2 PRO A 26 ? PRO A 25 . ? 1_555 ? 7 AC3 2 ASP A 16 ? ASP A 15 . ? 1_555 ? 8 AC3 2 HOH Z . ? HOH A 208 . ? 1_555 ? 9 AC4 4 GLU A 53 ? GLU A 52 . ? 1_555 ? 10 AC4 4 ASP A 54 ? ASP A 53 . ? 1_555 ? 11 AC4 4 HOH Z . ? HOH A 210 . ? 1_555 ? 12 AC4 4 HOH Z . ? HOH A 259 . ? 1_555 ? 13 AC5 5 LYS A 29 ? LYS A 28 . ? 1_555 ? 14 AC5 5 GLU A 32 ? GLU A 31 . ? 1_555 ? 15 AC5 5 HOH Z . ? HOH A 221 . ? 1_555 ? 16 AC5 5 HOH Z . ? HOH A 242 . ? 1_555 ? 17 AC5 5 HOH Z . ? HOH A 267 . ? 1_555 ? 18 AC6 5 TRP A 37 ? TRP A 36 . ? 1_555 ? 19 AC6 5 VAL A 38 ? VAL A 37 . ? 1_555 ? 20 AC6 5 HOH Z . ? HOH A 227 . ? 1_555 ? 21 AC6 5 HOH Z . ? HOH A 264 . ? 1_555 ? 22 AC6 5 HOH Z . ? HOH A 269 . ? 1_555 ? 23 AC7 4 TYR A 11 ? TYR A 10 . ? 1_555 ? 24 AC7 4 ASP A 19 ? ASP A 18 . ? 1_555 ? 25 AC7 4 PRO A 40 ? PRO A 39 . ? 1_555 ? 26 AC7 4 HOH Z . ? HOH A 255 . ? 1_555 ? 27 AC8 3 ASP A 21 ? ASP A 20 . ? 1_555 ? 28 AC8 3 HOH Z . ? HOH A 220 . ? 1_555 ? 29 AC8 3 HOH Z . ? HOH A 253 . ? 1_555 ? 30 AC9 4 GLU A 53 ? GLU A 52 . ? 1_555 ? 31 AC9 4 HOH Z . ? HOH A 202 . ? 1_555 ? 32 AC9 4 HOH Z . ? HOH A 204 . ? 1_555 ? 33 AC9 4 HOH Z . ? HOH A 243 . ? 1_555 ? 34 AD1 5 ILE A 24 ? ILE A 23 . ? 1_555 ? 35 AD1 5 SER A 25 ? SER A 24 . ? 1_555 ? 36 AD1 5 THR A 28 ? THR A 27 . ? 1_555 ? 37 AD1 5 HOH Z . ? HOH A 203 . ? 1_555 ? 38 AD1 5 HOH Z . ? HOH A 247 . ? 1_555 ? # _atom_sites.entry_id 6FO4 _atom_sites.fract_transf_matrix[1][1] 0.029499 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028777 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023127 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C D FE H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 ALA 2 1 1 ALA ALA A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 TRP 4 3 3 TRP TRP A . n A 1 5 VAL 5 4 4 VAL VAL A . n A 1 6 CYS 6 5 5 CYS CYS A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 CYS 9 8 8 CYS CYS A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 TYR 13 12 12 TYR TYR A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 ASP 16 15 15 ASP ASP A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 ILE 24 23 23 ILE ILE A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 PHE 30 29 29 PHE PHE A . n A 1 31 GLU 31 30 30 GLU GLU A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 ASP 35 34 34 ASP ASP A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 TRP 37 36 36 TRP TRP A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 CYS 39 38 38 CYS CYS A . n A 1 40 PRO 40 39 39 PRO PRO A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 CYS 42 41 41 CYS CYS A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 PRO 45 44 44 PRO PRO A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 SER 47 46 46 SER SER A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 GLU 53 52 52 GLU GLU A . n A 1 54 ASP 54 53 53 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 101 1 FE FE A . C 3 D3O 1 102 2 D3O D3O A . D 3 D3O 1 103 3 D3O D3O A . E 3 D3O 1 104 4 D3O D3O A . F 3 D3O 1 105 8 D3O D3O A . G 3 D3O 1 106 9 D3O D3O A . H 3 D3O 1 107 10 D3O D3O A . I 3 D3O 1 108 14 D3O D3O A . J 3 D3O 1 109 17 D3O D3O A . K 3 D3O 1 110 18 D3O D3O A . L 4 D8U 1 111 1 D8U D8U A . M 4 D8U 1 112 2 D8U D8U A . N 4 D8U 1 113 3 D8U D8U A . O 4 D8U 1 114 4 D8U D8U A . P 4 D8U 1 115 5 D8U D8U A . Q 4 D8U 1 116 6 D8U D8U A . R 4 D8U 1 117 7 D8U D8U A . S 4 D8U 1 118 8 D8U D8U A . T 4 D8U 1 119 9 D8U D8U A . U 4 D8U 1 120 10 D8U D8U A . V 4 D8U 1 121 11 D8U D8U A . W 4 D8U 1 122 12 D8U D8U A . X 4 D8U 1 123 13 D8U D8U A . Y 4 D8U 1 124 14 D8U D8U A . Z 5 HOH 1 201 19 HOH HOH A . Z 5 HOH 2 202 12 HOH HOH A . Z 5 HOH 3 203 223 HOH HOH A . Z 5 HOH 4 204 10 HOH HOH A . Z 5 HOH 5 205 261 HOH HOH A . Z 5 HOH 6 206 193 HOH HOH A . Z 5 HOH 7 207 60 HOH HOH A . Z 5 HOH 8 208 50 HOH HOH A . Z 5 HOH 9 209 180 HOH HOH A . Z 5 HOH 10 210 11 HOH HOH A . Z 5 HOH 11 211 148 HOH HOH A . Z 5 HOH 12 212 5 HOH HOH A . Z 5 HOH 13 213 217 HOH HOH A . Z 5 HOH 14 214 47 HOH HOH A . Z 5 HOH 15 215 15 HOH HOH A . Z 5 HOH 16 216 12 HOH HOH A . Z 5 HOH 17 217 28 HOH HOH A . Z 5 HOH 18 218 159 HOH HOH A . Z 5 HOH 19 219 17 HOH HOH A . Z 5 HOH 20 220 35 HOH HOH A . Z 5 HOH 21 221 90 HOH HOH A . Z 5 HOH 22 222 231 HOH HOH A . Z 5 HOH 23 223 48 HOH HOH A . Z 5 HOH 24 224 238 HOH HOH A . Z 5 HOH 25 225 236 HOH HOH A . Z 5 HOH 26 226 27 HOH HOH A . Z 5 HOH 27 227 9 HOH HOH A . Z 5 HOH 28 228 15 HOH HOH A . Z 5 HOH 29 229 201 HOH HOH A . Z 5 HOH 30 230 87 HOH HOH A . Z 5 HOH 31 231 66 HOH HOH A . Z 5 HOH 32 232 81 HOH HOH A . Z 5 HOH 33 233 18 HOH HOH A . Z 5 HOH 34 234 124 HOH HOH A . Z 5 HOH 35 235 17 HOH HOH A . Z 5 HOH 36 236 195 HOH HOH A . Z 5 HOH 37 237 32 HOH HOH A . Z 5 HOH 38 238 92 HOH HOH A . Z 5 HOH 39 239 44 HOH HOH A . Z 5 HOH 40 240 59 HOH HOH A . Z 5 HOH 41 241 2 HOH HOH A . Z 5 HOH 42 242 14 HOH HOH A . Z 5 HOH 43 243 2 HOH HOH A . Z 5 HOH 44 244 254 HOH HOH A . Z 5 HOH 45 245 4 HOH HOH A . Z 5 HOH 46 246 259 HOH HOH A . Z 5 HOH 47 247 37 HOH HOH A . Z 5 HOH 48 248 157 HOH HOH A . Z 5 HOH 49 249 43 HOH HOH A . Z 5 HOH 50 250 42 HOH HOH A . Z 5 HOH 51 251 73 HOH HOH A . Z 5 HOH 52 252 3 HOH HOH A . Z 5 HOH 53 253 252 HOH HOH A . Z 5 HOH 54 254 123 HOH HOH A . Z 5 HOH 55 255 11 HOH HOH A . Z 5 HOH 56 256 104 HOH HOH A . Z 5 HOH 57 257 225 HOH HOH A . Z 5 HOH 58 258 62 HOH HOH A . Z 5 HOH 59 259 6 HOH HOH A . Z 5 HOH 60 260 127 HOH HOH A . Z 5 HOH 61 261 20 HOH HOH A . Z 5 HOH 62 262 1 HOH HOH A . Z 5 HOH 63 263 16 HOH HOH A . Z 5 HOH 64 264 250 HOH HOH A . Z 5 HOH 65 265 24 HOH HOH A . Z 5 HOH 66 266 26 HOH HOH A . Z 5 HOH 67 267 244 HOH HOH A . Z 5 HOH 68 268 269 HOH HOH A . Z 5 HOH 69 269 243 HOH HOH A . Z 5 HOH 70 270 86 HOH HOH A . Z 5 HOH 71 271 63 HOH HOH A . Z 5 HOH 72 272 71 HOH HOH A . Z 5 HOH 73 273 219 HOH HOH A . Z 5 HOH 74 274 79 HOH HOH A . Z 5 HOH 75 275 181 HOH HOH A . Z 5 HOH 76 276 56 HOH HOH A . Z 5 HOH 77 277 8 HOH HOH A . Z 5 HOH 78 278 68 HOH HOH A . Z 5 HOH 79 279 169 HOH HOH A . Z 5 HOH 80 280 45 HOH HOH A . Z 5 HOH 81 281 179 HOH HOH A . Z 5 HOH 82 282 75 HOH HOH A . Z 5 HOH 83 283 3 HOH HOH A . Z 5 HOH 84 284 264 HOH HOH A . Z 5 HOH 85 285 6 HOH HOH A . Z 5 HOH 86 286 263 HOH HOH A . Z 5 HOH 87 287 69 HOH HOH A . Z 5 HOH 88 288 215 HOH HOH A . Z 5 HOH 89 289 120 HOH HOH A . Z 5 HOH 90 290 196 HOH HOH A . Z 5 HOH 91 291 109 HOH HOH A . Z 5 HOH 92 292 21 HOH HOH A . Z 5 HOH 93 293 197 HOH HOH A . Z 5 HOH 94 294 53 HOH HOH A . Z 5 HOH 95 295 84 HOH HOH A . Z 5 HOH 96 296 132 HOH HOH A . Z 5 HOH 97 297 271 HOH HOH A . Z 5 HOH 98 298 18 HOH HOH A . Z 5 HOH 99 299 140 HOH HOH A . Z 5 HOH 100 300 4 HOH HOH A . Z 5 HOH 101 301 267 HOH HOH A . Z 5 HOH 102 302 5 HOH HOH A . Z 5 HOH 103 303 39 HOH HOH A . Z 5 HOH 104 304 145 HOH HOH A . Z 5 HOH 105 305 7 HOH HOH A . Z 5 HOH 106 306 224 HOH HOH A . Z 5 HOH 107 307 198 HOH HOH A . Z 5 HOH 108 308 266 HOH HOH A . Z 5 HOH 109 309 255 HOH HOH A . Z 5 HOH 110 310 9 HOH HOH A . Z 5 HOH 111 311 93 HOH HOH A . Z 5 HOH 112 312 262 HOH HOH A . Z 5 HOH 113 313 76 HOH HOH A . Z 5 HOH 114 314 1 HOH HOH A . Z 5 HOH 115 315 200 HOH HOH A . Z 5 HOH 116 316 190 HOH HOH A . Z 5 HOH 117 317 249 HOH HOH A . Z 5 HOH 118 318 248 HOH HOH A . Z 5 HOH 119 319 260 HOH HOH A . Z 5 HOH 120 320 13 HOH HOH A . Z 5 HOH 121 321 204 HOH HOH A . Z 5 HOH 122 322 265 HOH HOH A . Z 5 HOH 123 323 36 HOH HOH A . Z 5 HOH 124 324 205 HOH HOH A . Z 5 HOH 125 325 270 HOH HOH A . Z 5 HOH 126 326 272 HOH HOH A . Z 5 HOH 127 327 226 HOH HOH A . Z 5 HOH 128 328 253 HOH HOH A . Z 5 HOH 129 329 141 HOH HOH A . Z 5 HOH 130 330 194 HOH HOH A . Z 5 HOH 131 331 122 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 3980 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 6 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 101 ? 1_555 SG ? A CYS 9 ? A CYS 8 ? 1_555 110.8 ? 2 SG ? A CYS 6 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 101 ? 1_555 SG ? A CYS 39 ? A CYS 38 ? 1_555 115.2 ? 3 SG ? A CYS 9 ? A CYS 8 ? 1_555 FE ? B FE . ? A FE 101 ? 1_555 SG ? A CYS 39 ? A CYS 38 ? 1_555 102.9 ? 4 SG ? A CYS 6 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 101 ? 1_555 SG ? A CYS 42 ? A CYS 41 ? 1_555 103.9 ? 5 SG ? A CYS 9 ? A CYS 8 ? 1_555 FE ? B FE . ? A FE 101 ? 1_555 SG ? A CYS 42 ? A CYS 41 ? 1_555 111.3 ? 6 SG ? A CYS 39 ? A CYS 38 ? 1_555 FE ? B FE . ? A FE 101 ? 1_555 SG ? A CYS 42 ? A CYS 41 ? 1_555 112.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-03-13 2 'Structure model' 1 1 2019-03-20 3 'Structure model' 2 0 2021-06-23 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' Other 4 3 'Structure model' Advisory 5 3 'Structure model' 'Non-polymer description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_proc 3 2 'Structure model' pdbx_database_status 4 3 'Structure model' chem_comp 5 3 'Structure model' pdbx_database_PDB_obs_spr # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_sf' 3 3 'Structure model' '_chem_comp.formula' 4 3 'Structure model' '_pdbx_database_PDB_obs_spr.details' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_3026: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? 'RETREAT (not imosflm)' 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 D A D8U 124 ? ? O A HOH 298 ? ? 1.27 2 1 D A D8U 115 ? ? O A HOH 243 ? ? 1.42 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 18 ? ? -155.09 64.89 2 1 ASP A 18 ? ? -155.09 65.62 3 1 ILE A 40 ? ? -93.32 -61.16 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 320 ? 5.82 . 2 1 O ? A HOH 321 ? 5.83 . 3 1 O ? A HOH 322 ? 6.24 . 4 1 O ? A HOH 323 ? 6.50 . 5 1 O ? A HOH 324 ? 6.53 . 6 1 O ? A HOH 325 ? . 6.56 7 1 O ? A HOH 326 ? 6.81 . 8 1 O ? A HOH 327 ? 6.81 . 9 1 O ? A HOH 328 ? . 7.07 10 1 O ? A HOH 329 ? 7.19 . 11 1 O ? A HOH 330 ? 7.58 . 12 1 O ? A HOH 331 ? 8.49 . # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Engineering and Physical Sciences Research Council' 'United Kingdom' ? 1 ILL France ? 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 trideuteriooxidanium D3O 4 'deuterium(1+)' D8U 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #