HEADER RNA BINDING PROTEIN 12-FEB-18 6FPX TITLE STRUCTURE OF S. POMBE MMI1 IN COMPLEX WITH 11-MER RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING PROTEIN MMI1; COMPND 3 CHAIN: A, C, E; COMPND 4 SYNONYM: MEIOTIC MRNA INTERCEPTION PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(P*UP*UP*UP*AP*AP*AP*CP*CP*UP*A)-3'); COMPND 8 CHAIN: B, D, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: MMI1, SPCC736.12C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 12 ORGANISM_COMMON: FISSION YEAST; SOURCE 13 ORGANISM_TAXID: 4896 KEYWDS MEIOSIS MRNA DECAY, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.W.STOWELL,C.H.HILL,M.YU,J.L.WAGSTAFF,S.H.MCLAUGHLIN,S.M.V.FREUND, AUTHOR 2 L.A.PASSMORE REVDAT 2 27-JUN-18 6FPX 1 JRNL REVDAT 1 09-MAY-18 6FPX 0 JRNL AUTH J.A.W.STOWELL,J.L.WAGSTAFF,C.H.HILL,M.YU,S.H.MCLAUGHLIN, JRNL AUTH 2 S.M.V.FREUND,L.A.PASSMORE JRNL TITL A LOW-COMPLEXITY REGION IN THE YTH DOMAIN PROTEIN MMI1 JRNL TITL 2 ENHANCES RNA BINDING. JRNL REF J. BIOL. CHEM. V. 293 9210 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29695507 JRNL DOI 10.1074/JBC.RA118.002291 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 58635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.380 REMARK 3 FREE R VALUE TEST SET COUNT : 1983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6219 - 4.7395 1.00 4050 133 0.1784 0.1810 REMARK 3 2 4.7395 - 3.7625 1.00 4046 138 0.1667 0.2121 REMARK 3 3 3.7625 - 3.2870 1.00 4065 142 0.2019 0.2172 REMARK 3 4 3.2870 - 2.9866 1.00 4062 144 0.2173 0.2799 REMARK 3 5 2.9866 - 2.7725 1.00 4036 150 0.2311 0.2881 REMARK 3 6 2.7725 - 2.6091 1.00 4075 146 0.2208 0.2624 REMARK 3 7 2.6091 - 2.4784 1.00 4058 144 0.2137 0.2773 REMARK 3 8 2.4784 - 2.3705 1.00 4058 145 0.2058 0.2307 REMARK 3 9 2.3705 - 2.2793 1.00 4037 140 0.2156 0.2441 REMARK 3 10 2.2793 - 2.2006 1.00 4059 136 0.2217 0.2492 REMARK 3 11 2.2006 - 2.1318 1.00 4032 141 0.2243 0.2827 REMARK 3 12 2.1318 - 2.0709 1.00 4041 143 0.2345 0.3026 REMARK 3 13 2.0709 - 2.0164 1.00 4073 140 0.2607 0.2638 REMARK 3 14 2.0164 - 1.9672 0.97 3960 141 0.2797 0.3090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4939 REMARK 3 ANGLE : 1.415 6769 REMARK 3 CHIRALITY : 0.085 756 REMARK 3 PLANARITY : 0.009 768 REMARK 3 DIHEDRAL : 19.759 2931 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4121 -11.6898 5.3607 REMARK 3 T TENSOR REMARK 3 T11: 0.8012 T22: 0.6158 REMARK 3 T33: 0.5037 T12: 0.0926 REMARK 3 T13: 0.0628 T23: 0.1339 REMARK 3 L TENSOR REMARK 3 L11: 3.0896 L22: 3.6989 REMARK 3 L33: 9.5081 L12: -0.1441 REMARK 3 L13: -1.0209 L23: 5.8321 REMARK 3 S TENSOR REMARK 3 S11: -0.3874 S12: 0.3633 S13: -0.1993 REMARK 3 S21: -0.3217 S22: -0.2952 S23: -0.0616 REMARK 3 S31: 0.1042 S32: 0.6145 S33: 0.7201 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6847 -28.3044 13.1408 REMARK 3 T TENSOR REMARK 3 T11: 0.1996 T22: 0.3201 REMARK 3 T33: 0.2759 T12: 0.0126 REMARK 3 T13: 0.0097 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 1.4399 L22: 2.0807 REMARK 3 L33: 3.8513 L12: 0.4154 REMARK 3 L13: 0.4910 L23: 0.6400 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.0807 S13: -0.0271 REMARK 3 S21: 0.0112 S22: -0.1749 S23: 0.1601 REMARK 3 S31: -0.0161 S32: -0.5623 S33: 0.1436 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4201 -15.5911 3.6753 REMARK 3 T TENSOR REMARK 3 T11: 0.4295 T22: 0.6611 REMARK 3 T33: 0.5840 T12: 0.1996 REMARK 3 T13: -0.1371 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.7480 L22: 5.2718 REMARK 3 L33: 1.5902 L12: -0.6004 REMARK 3 L13: -0.8426 L23: -0.5971 REMARK 3 S TENSOR REMARK 3 S11: -0.1613 S12: 0.3754 S13: 0.3514 REMARK 3 S21: -0.0118 S22: 0.1098 S23: 0.6816 REMARK 3 S31: -0.3487 S32: -0.6466 S33: -0.0080 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 313 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1924 -48.8268 2.1920 REMARK 3 T TENSOR REMARK 3 T11: 0.4512 T22: 0.2914 REMARK 3 T33: 0.2959 T12: 0.0697 REMARK 3 T13: -0.0042 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 7.5030 L22: 1.4488 REMARK 3 L33: 3.6173 L12: -1.3298 REMARK 3 L13: 0.4124 L23: 0.2235 REMARK 3 S TENSOR REMARK 3 S11: -0.4056 S12: -0.0332 S13: -0.0544 REMARK 3 S21: 0.1035 S22: 0.0886 S23: 0.1056 REMARK 3 S31: -0.5931 S32: -0.3713 S33: 0.2899 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 371 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8396 -49.9627 0.3861 REMARK 3 T TENSOR REMARK 3 T11: 0.3609 T22: 0.3049 REMARK 3 T33: 0.3340 T12: -0.0479 REMARK 3 T13: -0.0310 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.5145 L22: 1.4014 REMARK 3 L33: 5.4717 L12: 0.4481 REMARK 3 L13: 0.7233 L23: -0.1328 REMARK 3 S TENSOR REMARK 3 S11: -0.1505 S12: 0.0543 S13: 0.1279 REMARK 3 S21: 0.0830 S22: -0.0318 S23: -0.0929 REMARK 3 S31: -0.6465 S32: 0.4833 S33: 0.1611 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID -4 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3211 -35.4116 9.4087 REMARK 3 T TENSOR REMARK 3 T11: 0.8989 T22: 0.4172 REMARK 3 T33: 0.6648 T12: 0.0439 REMARK 3 T13: -0.1657 T23: -0.1775 REMARK 3 L TENSOR REMARK 3 L11: 3.3714 L22: 8.2076 REMARK 3 L33: 5.1480 L12: -4.4154 REMARK 3 L13: -1.1636 L23: -1.8639 REMARK 3 S TENSOR REMARK 3 S11: -0.5322 S12: -0.7436 S13: 1.5893 REMARK 3 S21: 0.2302 S22: -0.1406 S23: -0.3232 REMARK 3 S31: -1.1354 S32: 0.0512 S33: 0.4998 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 314 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9090 -8.8636 34.0676 REMARK 3 T TENSOR REMARK 3 T11: 0.6862 T22: 0.8806 REMARK 3 T33: 0.6523 T12: 0.0214 REMARK 3 T13: -0.0718 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.9360 L22: 2.4177 REMARK 3 L33: 3.8509 L12: 0.8809 REMARK 3 L13: 0.3633 L23: 0.3525 REMARK 3 S TENSOR REMARK 3 S11: 0.2048 S12: -0.2340 S13: 0.0393 REMARK 3 S21: 0.2989 S22: -0.2269 S23: -0.3470 REMARK 3 S31: 0.1078 S32: 0.7545 S33: 0.0043 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 371 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8008 -12.3976 32.5413 REMARK 3 T TENSOR REMARK 3 T11: 0.7590 T22: 0.6265 REMARK 3 T33: 0.5484 T12: -0.0171 REMARK 3 T13: 0.0021 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.5160 L22: 2.2642 REMARK 3 L33: 3.2724 L12: 0.5790 REMARK 3 L13: -0.6449 L23: -0.3845 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: 0.0901 S13: -0.1723 REMARK 3 S21: 0.2093 S22: 0.0393 S23: -0.0574 REMARK 3 S31: 0.3598 S32: 0.0928 S33: 0.0664 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'F' AND (RESID -2 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9278 -22.3869 40.6697 REMARK 3 T TENSOR REMARK 3 T11: 0.9088 T22: 0.9283 REMARK 3 T33: 1.0824 T12: 0.2927 REMARK 3 T13: -0.0074 T23: 0.1804 REMARK 3 L TENSOR REMARK 3 L11: 6.5243 L22: 5.1622 REMARK 3 L33: 3.9064 L12: -0.4727 REMARK 3 L13: -0.8445 L23: 0.9434 REMARK 3 S TENSOR REMARK 3 S11: -0.3437 S12: -1.0827 S13: -0.9952 REMARK 3 S21: 0.4671 S22: -0.1147 S23: -1.2102 REMARK 3 S31: 1.2194 S32: 1.1439 S33: 0.3096 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58703 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 91.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 8K, 0.1M CHES PH 9.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.47067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.23533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 297 REMARK 465 PRO A 298 REMARK 465 SER A 299 REMARK 465 ALA A 300 REMARK 465 SER A 301 REMARK 465 ARG A 302 REMARK 465 LYS A 303 REMARK 465 GLU A 304 REMARK 465 LYS A 305 REMARK 465 PRO A 306 REMARK 465 LYS A 307 REMARK 465 ALA A 308 REMARK 465 ARG A 309 REMARK 465 ALA A 310 REMARK 465 SER A 311 REMARK 465 C B -4 REMARK 465 GLY C 297 REMARK 465 PRO C 298 REMARK 465 SER C 299 REMARK 465 ALA C 300 REMARK 465 SER C 301 REMARK 465 ARG C 302 REMARK 465 LYS C 303 REMARK 465 GLU C 304 REMARK 465 LYS C 305 REMARK 465 PRO C 306 REMARK 465 LYS C 307 REMARK 465 ALA C 308 REMARK 465 ARG C 309 REMARK 465 ALA C 310 REMARK 465 SER C 311 REMARK 465 THR C 312 REMARK 465 GLY E 297 REMARK 465 PRO E 298 REMARK 465 SER E 299 REMARK 465 ALA E 300 REMARK 465 SER E 301 REMARK 465 ARG E 302 REMARK 465 LYS E 303 REMARK 465 GLU E 304 REMARK 465 LYS E 305 REMARK 465 PRO E 306 REMARK 465 LYS E 307 REMARK 465 ALA E 308 REMARK 465 ARG E 309 REMARK 465 ALA E 310 REMARK 465 SER E 311 REMARK 465 THR E 312 REMARK 465 PRO E 313 REMARK 465 C F -4 REMARK 465 U F -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 312 OG1 CG2 REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU C 327 CG CD OE1 OE2 REMARK 470 C D -4 O5' REMARK 470 A D 7 O5' C5' C4' O4' C3' O3' C2' REMARK 470 A D 7 O2' C1' N9 C8 N7 C5 C6 REMARK 470 A D 7 N6 N1 C2 N3 C4 REMARK 470 GLU E 327 CG CD OE1 OE2 REMARK 470 THR E 361 OG1 CG2 REMARK 470 A F 7 O5' C5' C4' O4' C3' O3' C2' REMARK 470 A F 7 O2' C1' N9 C8 N7 C5 C6 REMARK 470 A F 7 N6 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU C 360 O HOH C 601 1.83 REMARK 500 N HIS C 451 O HOH C 602 1.89 REMARK 500 N ALA C 364 O HOH C 601 1.92 REMARK 500 O HOH A 685 O HOH A 690 1.95 REMARK 500 O GLU C 447 O HOH C 602 1.96 REMARK 500 O GLY A 455 O HOH A 601 2.01 REMARK 500 O ILE C 448 O HOH C 602 2.05 REMARK 500 OXT ARG E 488 O HOH E 501 2.08 REMARK 500 N SER C 450 O HOH C 602 2.09 REMARK 500 NZ LYS C 367 O HOH C 603 2.10 REMARK 500 ND2 ASN E 326 O HOH E 502 2.11 REMARK 500 NH1 ARG A 431 O HOH A 602 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 612 O HOH A 622 2544 1.81 REMARK 500 O HOH A 607 O HOH A 686 2544 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 450 CA SER A 450 CB 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 381 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 U B -3 C2 - N1 - C1' ANGL. DEV. = 7.2 DEGREES REMARK 500 A B 1 N7 - C8 - N9 ANGL. DEV. = -4.2 DEGREES REMARK 500 A B 1 C8 - N9 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 A B 2 O5' - P - OP2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG E 320 CG - CD - NE ANGL. DEV. = -15.4 DEGREES REMARK 500 U F -2 O5' - P - OP1 ANGL. DEV. = -5.7 DEGREES REMARK 500 U F 6 C2 - N1 - C1' ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 417 75.22 -103.07 REMARK 500 GLU C 417 76.32 -102.88 REMARK 500 ASP C 423 -166.44 -129.56 REMARK 500 ASP E 453 79.79 -106.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 502 DBREF 6FPX A 299 488 UNP O74958 MMI1_SCHPO 299 488 DBREF 6FPX B -4 7 PDB 6FPX 6FPX -4 7 DBREF 6FPX C 299 488 UNP O74958 MMI1_SCHPO 299 488 DBREF 6FPX D -4 7 PDB 6FPX 6FPX -4 7 DBREF 6FPX E 299 488 UNP O74958 MMI1_SCHPO 299 488 DBREF 6FPX F -4 7 PDB 6FPX 6FPX -4 7 SEQADV 6FPX GLY A 297 UNP O74958 EXPRESSION TAG SEQADV 6FPX PRO A 298 UNP O74958 EXPRESSION TAG SEQADV 6FPX GLY C 297 UNP O74958 EXPRESSION TAG SEQADV 6FPX PRO C 298 UNP O74958 EXPRESSION TAG SEQADV 6FPX GLY E 297 UNP O74958 EXPRESSION TAG SEQADV 6FPX PRO E 298 UNP O74958 EXPRESSION TAG SEQRES 1 A 192 GLY PRO SER ALA SER ARG LYS GLU LYS PRO LYS ALA ARG SEQRES 2 A 192 ALA SER THR PRO PRO PRO LEU ASN PHE SER ARG ALA SER SEQRES 3 A 192 GLU HIS ARG ASN GLU LYS GLY GLU ARG ILE SER MET ILE SEQRES 4 A 192 ASN PRO ARG VAL VAL LEU ASP GLU ASN GLY ILE SER HIS SEQRES 5 A 192 ARG SER ARG TYR PHE ILE MET LEU CYS ASP ASN GLU THR SEQRES 6 A 192 ALA ILE ALA HIS ALA LYS LYS THR SER ILE TRP ALA VAL SEQRES 7 A 192 LYS LYS ASP SER SER LYS ARG ILE SER ASP ALA TYR LYS SEQRES 8 A 192 LYS ALA SER VAL TYR PHE ILE PHE VAL ALA GLN GLN THR SEQRES 9 A 192 TYR ASN ALA LEU GLY TYR ALA GLN VAL VAL SER ASP LEU SEQRES 10 A 192 ASN SER THR GLU LEU PRO PHE TRP SER ASP SER SER HIS SEQRES 11 A 192 ALA GLY GLY VAL ARG ILE LYS TRP ILE LYS THR CYS ASN SEQRES 12 A 192 LEU PHE SER ALA GLU ILE SER GLU ILE VAL SER HIS MET SEQRES 13 A 192 ASP HIS GLY SER GLU ALA ARG ASP GLY MET GLU MET MET SEQRES 14 A 192 TYR ASP GLU GLY SER ARG LEU CYS THR LEU ILE ASN TYR SEQRES 15 A 192 ALA ILE MET LYS ARG ILE GLY ARG ASP ARG SEQRES 1 B 11 C U U U A A A C C U A SEQRES 1 C 192 GLY PRO SER ALA SER ARG LYS GLU LYS PRO LYS ALA ARG SEQRES 2 C 192 ALA SER THR PRO PRO PRO LEU ASN PHE SER ARG ALA SER SEQRES 3 C 192 GLU HIS ARG ASN GLU LYS GLY GLU ARG ILE SER MET ILE SEQRES 4 C 192 ASN PRO ARG VAL VAL LEU ASP GLU ASN GLY ILE SER HIS SEQRES 5 C 192 ARG SER ARG TYR PHE ILE MET LEU CYS ASP ASN GLU THR SEQRES 6 C 192 ALA ILE ALA HIS ALA LYS LYS THR SER ILE TRP ALA VAL SEQRES 7 C 192 LYS LYS ASP SER SER LYS ARG ILE SER ASP ALA TYR LYS SEQRES 8 C 192 LYS ALA SER VAL TYR PHE ILE PHE VAL ALA GLN GLN THR SEQRES 9 C 192 TYR ASN ALA LEU GLY TYR ALA GLN VAL VAL SER ASP LEU SEQRES 10 C 192 ASN SER THR GLU LEU PRO PHE TRP SER ASP SER SER HIS SEQRES 11 C 192 ALA GLY GLY VAL ARG ILE LYS TRP ILE LYS THR CYS ASN SEQRES 12 C 192 LEU PHE SER ALA GLU ILE SER GLU ILE VAL SER HIS MET SEQRES 13 C 192 ASP HIS GLY SER GLU ALA ARG ASP GLY MET GLU MET MET SEQRES 14 C 192 TYR ASP GLU GLY SER ARG LEU CYS THR LEU ILE ASN TYR SEQRES 15 C 192 ALA ILE MET LYS ARG ILE GLY ARG ASP ARG SEQRES 1 D 11 C U U U A A A C C U A SEQRES 1 E 192 GLY PRO SER ALA SER ARG LYS GLU LYS PRO LYS ALA ARG SEQRES 2 E 192 ALA SER THR PRO PRO PRO LEU ASN PHE SER ARG ALA SER SEQRES 3 E 192 GLU HIS ARG ASN GLU LYS GLY GLU ARG ILE SER MET ILE SEQRES 4 E 192 ASN PRO ARG VAL VAL LEU ASP GLU ASN GLY ILE SER HIS SEQRES 5 E 192 ARG SER ARG TYR PHE ILE MET LEU CYS ASP ASN GLU THR SEQRES 6 E 192 ALA ILE ALA HIS ALA LYS LYS THR SER ILE TRP ALA VAL SEQRES 7 E 192 LYS LYS ASP SER SER LYS ARG ILE SER ASP ALA TYR LYS SEQRES 8 E 192 LYS ALA SER VAL TYR PHE ILE PHE VAL ALA GLN GLN THR SEQRES 9 E 192 TYR ASN ALA LEU GLY TYR ALA GLN VAL VAL SER ASP LEU SEQRES 10 E 192 ASN SER THR GLU LEU PRO PHE TRP SER ASP SER SER HIS SEQRES 11 E 192 ALA GLY GLY VAL ARG ILE LYS TRP ILE LYS THR CYS ASN SEQRES 12 E 192 LEU PHE SER ALA GLU ILE SER GLU ILE VAL SER HIS MET SEQRES 13 E 192 ASP HIS GLY SER GLU ALA ARG ASP GLY MET GLU MET MET SEQRES 14 E 192 TYR ASP GLU GLY SER ARG LEU CYS THR LEU ILE ASN TYR SEQRES 15 E 192 ALA ILE MET LYS ARG ILE GLY ARG ASP ARG SEQRES 1 F 11 C U U U A A A C C U A HET GOL A 501 6 HET GOL C 501 6 HET GOL C 502 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 HOH *220(H2 O) HELIX 1 AA1 ARG A 320 HIS A 324 5 5 HELIX 2 AA2 ASN A 359 SER A 370 1 12 HELIX 3 AA3 LYS A 376 ALA A 389 1 14 HELIX 4 AA4 SER A 442 HIS A 451 1 10 HELIX 5 AA5 MET A 465 LYS A 482 1 18 HELIX 6 AA6 ARG C 320 HIS C 324 5 5 HELIX 7 AA7 ASN C 359 SER C 370 1 12 HELIX 8 AA8 LYS C 376 LYS C 387 1 12 HELIX 9 AA9 SER C 442 HIS C 451 1 10 HELIX 10 AB1 MET C 465 LYS C 482 1 18 HELIX 11 AB2 ARG E 320 HIS E 324 5 5 HELIX 12 AB3 ASN E 359 SER E 370 1 12 HELIX 13 AB4 LYS E 376 ALA E 389 1 14 HELIX 14 AB5 SER E 442 HIS E 451 1 10 HELIX 15 AB6 MET E 465 LYS E 482 1 18 SHEET 1 AA1 2 ARG A 331 ILE A 332 0 SHEET 2 AA1 2 VAL A 340 LEU A 341 -1 O LEU A 341 N ARG A 331 SHEET 1 AA2 6 ILE A 371 LYS A 375 0 SHEET 2 AA2 6 HIS A 426 LEU A 440 -1 O ALA A 427 N VAL A 374 SHEET 3 AA2 6 ALA A 403 VAL A 409 -1 N TYR A 406 O ILE A 435 SHEET 4 AA2 6 SER A 390 ALA A 397 -1 N VAL A 391 O VAL A 409 SHEET 5 AA2 6 SER A 350 CYS A 357 1 N PHE A 353 O TYR A 392 SHEET 6 AA2 6 GLU A 463 MET A 464 -1 O MET A 464 N TYR A 352 SHEET 1 AA3 2 ARG C 331 ILE C 332 0 SHEET 2 AA3 2 VAL C 340 LEU C 341 -1 O LEU C 341 N ARG C 331 SHEET 1 AA4 6 ILE C 371 LYS C 375 0 SHEET 2 AA4 6 HIS C 426 LEU C 440 -1 O ALA C 427 N VAL C 374 SHEET 3 AA4 6 ALA C 403 VAL C 409 -1 N ALA C 403 O LEU C 440 SHEET 4 AA4 6 SER C 390 ALA C 397 -1 N VAL C 391 O VAL C 409 SHEET 5 AA4 6 SER C 350 CYS C 357 1 N PHE C 353 O TYR C 392 SHEET 6 AA4 6 GLU C 463 MET C 464 -1 O MET C 464 N TYR C 352 SHEET 1 AA5 2 ARG E 331 ILE E 332 0 SHEET 2 AA5 2 VAL E 340 LEU E 341 -1 O LEU E 341 N ARG E 331 SHEET 1 AA6 6 ILE E 371 LYS E 375 0 SHEET 2 AA6 6 HIS E 426 LEU E 440 -1 O ALA E 427 N VAL E 374 SHEET 3 AA6 6 ALA E 403 VAL E 409 -1 N TYR E 406 O ILE E 435 SHEET 4 AA6 6 SER E 390 ALA E 397 -1 N PHE E 395 O LEU E 404 SHEET 5 AA6 6 SER E 350 CYS E 357 1 N ARG E 351 O TYR E 392 SHEET 6 AA6 6 GLU E 463 MET E 464 -1 O MET E 464 N TYR E 352 SITE 1 AC1 7 ASP A 342 ILE A 346 HIS A 348 ARG A 351 SITE 2 AC1 7 HOH A 648 HOH A 649 HOH A 654 SITE 1 AC2 5 LEU C 316 PHE C 318 GLU C 444 GLU C 447 SITE 2 AC2 5 HOH C 622 SITE 1 AC3 5 LYS C 380 SER C 383 ASP C 384 LYS C 387 SITE 2 AC3 5 GLN C 399 CRYST1 105.331 105.331 66.706 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009494 0.005481 0.000000 0.00000 SCALE2 0.000000 0.010963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014991 0.00000