HEADER RNA BINDING PROTEIN 13-FEB-18 6FQ3 TITLE CRYSTAL STRUCTURE OF DANIO RERIO LIN41 FILAMIN-NHL DOMAINS IN COMPLEX TITLE 2 WITH LIN-29A 5'UTR 13MER RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE TRIM71; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN LIN-41 HOMOLOG,RING-TYPE E3 UBIQUITIN TRANSFERASE COMPND 5 TRIM71,TRIPARTITE MOTIF-CONTAINING PROTEIN 71; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: FRAGMENT OF LIN41 ENCOMPASSING FILAMIN-NHL DOMAINS COMPND 9 (RESIDUES 435-824); COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RNA (5'-R(*GP*GP*AP*GP*UP*CP*CP*AP*AP*CP*UP*CP*C)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: FRAGMENT OF LIN-29A 5'UTR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: TRIM71, LIN41; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 11 ORGANISM_TAXID: 6239; SOURCE 12 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS POST-TRANSCRIPTIONAL REGULATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMARI,F.AESCHIMANN,D.GAIDATZIS,J.J.KEUSCH,P.GHOSH,A.NEAGU, AUTHOR 2 K.PACHULSKA-WIECZOREK,J.M.BUJNICKI,H.GUT,H.GROSSHANS,R.CIOSK REVDAT 2 17-JAN-24 6FQ3 1 REMARK REVDAT 1 09-MAY-18 6FQ3 0 JRNL AUTH P.KUMARI,F.AESCHIMANN,D.GAIDATZIS,J.J.KEUSCH,P.GHOSH, JRNL AUTH 2 A.NEAGU,K.PACHULSKA-WIECZOREK,J.M.BUJNICKI,H.GUT, JRNL AUTH 3 H.GROSSHANS,R.CIOSK JRNL TITL EVOLUTIONARY PLASTICITY OF THE NHL DOMAIN UNDERLIES DISTINCT JRNL TITL 2 SOLUTIONS TO RNA RECOGNITION. JRNL REF NAT COMMUN V. 9 1549 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29674686 JRNL DOI 10.1038/S41467-018-03920-7 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 51933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6507 - 5.0713 1.00 2782 147 0.1440 0.1566 REMARK 3 2 5.0713 - 4.0260 1.00 2665 140 0.1120 0.1313 REMARK 3 3 4.0260 - 3.5173 1.00 2637 139 0.1507 0.1694 REMARK 3 4 3.5173 - 3.1957 1.00 2624 138 0.1608 0.1730 REMARK 3 5 3.1957 - 2.9667 1.00 2636 139 0.1723 0.2060 REMARK 3 6 2.9667 - 2.7918 1.00 2624 138 0.1783 0.2085 REMARK 3 7 2.7918 - 2.6520 1.00 2617 138 0.1816 0.2049 REMARK 3 8 2.6520 - 2.5366 1.00 2576 135 0.1777 0.2298 REMARK 3 9 2.5366 - 2.4390 1.00 2607 137 0.1753 0.1919 REMARK 3 10 2.4390 - 2.3548 1.00 2590 137 0.1793 0.2187 REMARK 3 11 2.3548 - 2.2812 1.00 2598 137 0.1765 0.2200 REMARK 3 12 2.2812 - 2.2160 1.00 2586 136 0.1879 0.2181 REMARK 3 13 2.2160 - 2.1576 1.00 2592 136 0.1916 0.2360 REMARK 3 14 2.1576 - 2.1050 1.00 2574 136 0.2054 0.2399 REMARK 3 15 2.1050 - 2.0571 1.00 2585 135 0.2161 0.2431 REMARK 3 16 2.0571 - 2.0134 1.00 2596 136 0.2440 0.2797 REMARK 3 17 2.0134 - 1.9731 1.00 2563 135 0.2697 0.3004 REMARK 3 18 1.9731 - 1.9358 1.00 2594 137 0.3205 0.3299 REMARK 3 19 1.9358 - 1.9013 0.89 2291 120 0.4198 0.4371 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3402 REMARK 3 ANGLE : 0.792 4658 REMARK 3 CHIRALITY : 0.062 494 REMARK 3 PLANARITY : 0.006 584 REMARK 3 DIHEDRAL : 11.662 1959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A):-116.6180 286.8013 225.8476 REMARK 3 T TENSOR REMARK 3 T11: 0.2928 T22: 0.5176 REMARK 3 T33: 0.5657 T12: -0.0154 REMARK 3 T13: -0.0505 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 5.0373 L22: 4.9040 REMARK 3 L33: 4.6982 L12: -0.8186 REMARK 3 L13: 0.4352 L23: 0.2860 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: -0.2855 S13: 0.2833 REMARK 3 S21: 0.1534 S22: 0.0773 S23: -0.5480 REMARK 3 S31: 0.0158 S32: 0.4425 S33: -0.0458 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 538 THROUGH 824 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.0549 272.3873 233.0776 REMARK 3 T TENSOR REMARK 3 T11: 0.5224 T22: 0.4501 REMARK 3 T33: 0.3911 T12: 0.0581 REMARK 3 T13: -0.0788 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 2.2194 L22: 2.4824 REMARK 3 L33: 2.4228 L12: 0.5313 REMARK 3 L13: -0.1806 L23: -0.4697 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.4290 S13: 0.0470 REMARK 3 S21: -0.7203 S22: 0.0845 S23: 0.2749 REMARK 3 S31: 0.1012 S32: -0.0907 S33: -0.0786 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.3780 263.3322 244.6277 REMARK 3 T TENSOR REMARK 3 T11: 0.5081 T22: 0.5576 REMARK 3 T33: 0.5016 T12: 0.0879 REMARK 3 T13: 0.0897 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 6.0858 L22: 3.0757 REMARK 3 L33: 6.6149 L12: -1.0510 REMARK 3 L13: 2.6150 L23: -2.0493 REMARK 3 S TENSOR REMARK 3 S11: 0.3015 S12: 0.4834 S13: -0.3550 REMARK 3 S21: -0.0959 S22: -0.2606 S23: -0.1633 REMARK 3 S31: -0.1071 S32: 0.9225 S33: -0.0026 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51941 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 2.17200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000 20% ETHYLENE GLYCOL 0.1M REMARK 280 CARBOXYLIC ACIDS 0.1 M BICINE/TRIZMA BASE PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.63000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.26000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.26000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 416 REMARK 465 ALA A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 SER A 424 REMARK 465 SER A 425 REMARK 465 GLY A 426 REMARK 465 LEU A 427 REMARK 465 GLU A 428 REMARK 465 VAL A 429 REMARK 465 LEU A 430 REMARK 465 PHE A 431 REMARK 465 GLN A 432 REMARK 465 GLY A 433 REMARK 465 PRO A 434 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1002 O HOH A 1050 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 566 -68.86 -133.77 REMARK 500 TYR A 658 72.20 61.88 REMARK 500 ARG A 707 -82.19 -131.46 REMARK 500 GLN A 754 -107.85 -125.62 REMARK 500 SER A 801 -104.63 -121.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FPT RELATED DB: PDB REMARK 900 6FPT CONTAINS THE SAME PROTEIN IN UNLIGANDED STATE DBREF 6FQ3 A 435 824 UNP E7FAM5 LIN41_DANRE 435 824 DBREF 6FQ3 B 1 13 PDB 6FQ3 6FQ3 1 13 SEQADV 6FQ3 MET A 416 UNP E7FAM5 INITIATING METHIONINE SEQADV 6FQ3 ALA A 417 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 HIS A 418 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 HIS A 419 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 HIS A 420 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 HIS A 421 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 HIS A 422 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 HIS A 423 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 SER A 424 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 SER A 425 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 GLY A 426 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 LEU A 427 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 GLU A 428 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 VAL A 429 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 LEU A 430 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 PHE A 431 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 GLN A 432 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 GLY A 433 UNP E7FAM5 EXPRESSION TAG SEQADV 6FQ3 PRO A 434 UNP E7FAM5 EXPRESSION TAG SEQRES 1 A 409 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 409 VAL LEU PHE GLN GLY PRO SER SER GLY ALA PHE ALA THR SEQRES 3 A 409 ALA SER LYS ALA HIS GLY GLU GLY ILE LYS ARG ALA LEU SEQRES 4 A 409 GLN GLY LYS PRO ALA SER PHE THR VAL VAL GLY TYR ASP SEQRES 5 A 409 HIS ASP GLY GLU PRO ARG LEU SER GLY GLY ASP SER VAL SEQRES 6 A 409 SER VAL VAL LEU MET SER PRO ASP GLY ASN LEU SER SER SEQRES 7 A 409 ALA GLU VAL SER ASP HIS GLN ASP GLY THR TYR THR VAL SEQRES 8 A 409 SER TYR LEU PRO LYS GLY GLU GLY GLU HIS LEU LEU SER SEQRES 9 A 409 VAL LEU ILE CYS ASN GLN HIS ILE GLU GLY SER PRO PHE SEQRES 10 A 409 LYS VAL MET VAL LYS SER GLY ARG SER TYR GLY GLY VAL SEQRES 11 A 409 GLY LEU PRO MET ALA SER PHE GLY GLY GLU GLY ASP GLY SEQRES 12 A 409 ASP GLY GLN LEU CYS ARG PRO TRP GLY ILE CYS VAL ASP SEQRES 13 A 409 LYS GLU GLY TYR VAL VAL VAL ALA ASP ARG SER ASN ASN SEQRES 14 A 409 ARG VAL GLN ILE PHE LYS PRO CYS GLY THR PHE HIS HIS SEQRES 15 A 409 LYS PHE GLY THR LEU GLY SER ARG PRO GLY GLN PHE ASP SEQRES 16 A 409 ARG PRO ALA GLY VAL ALA CYS ASP SER GLN ARG ARG ILE SEQRES 17 A 409 ILE VAL ALA ASP LYS ASP ASN HIS ARG ILE GLN ILE PHE SEQRES 18 A 409 THR PHE ASP GLY GLN PHE LEU LEU LYS PHE GLY GLU LYS SEQRES 19 A 409 GLY THR LYS ASN GLY GLN PHE ASN TYR PRO TRP ASP VAL SEQRES 20 A 409 ALA VAL ASN PHE GLU GLY LYS ILE LEU VAL SER ASP THR SEQRES 21 A 409 ARG ASN HIS ARG VAL GLN LEU PHE GLY PRO ASP GLY THR SEQRES 22 A 409 PHE LEU ASN LYS TYR GLY PHE GLU GLY ALA LEU TRP LYS SEQRES 23 A 409 HIS PHE ASP SER PRO ARG GLY VAL ALA PHE ASN GLN GLU SEQRES 24 A 409 GLY HIS LEU VAL VAL THR ASP PHE ASN ASN HIS ARG LEU SEQRES 25 A 409 LEU VAL ILE ARG PRO ASP CYS GLN SER ALA ARG PHE LEU SEQRES 26 A 409 GLY SER GLU GLY THR GLY ASN GLY GLN PHE LEU ARG PRO SEQRES 27 A 409 GLN GLY VAL ALA VAL ASP GLN GLU ASP ARG ILE ILE VAL SEQRES 28 A 409 ALA ASP SER ARG ASN HIS ARG ILE GLN VAL PHE GLU PRO SEQRES 29 A 409 ASN GLY ASN PHE LEU CYS LYS PHE GLY THR HIS GLY ASN SEQRES 30 A 409 GLY PHE GLY GLN MET ASP ARG PRO SER GLY ILE ALA VAL SEQRES 31 A 409 THR PRO ASP GLY VAL ILE VAL ALA VAL ASP PHE GLY ASN SEQRES 32 A 409 ASN ARG ILE LEU MET PHE SEQRES 1 B 13 G G A G U C C A A C U C C HET CL A 901 1 HET CL A 902 1 HET CL A 903 1 HET CL A 904 1 HET CL A 905 1 HET CL A 906 1 HET CL A 907 1 HET CL B 101 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 8(CL 1-) FORMUL 11 HOH *237(H2 O) HELIX 1 AA1 PHE A 439 SER A 443 5 5 HELIX 2 AA2 GLY A 447 ILE A 450 5 4 HELIX 3 AA3 ARG A 581 ASN A 584 5 4 HELIX 4 AA4 LYS A 628 HIS A 631 5 4 HELIX 5 AA5 GLU A 696 ASP A 704 5 9 HELIX 6 AA6 ARG A 770 HIS A 772 5 3 SHEET 1 AA1 4 LYS A 444 HIS A 446 0 SHEET 2 AA1 4 ALA A 459 VAL A 464 -1 O VAL A 464 N LYS A 444 SHEET 3 AA1 4 THR A 503 TYR A 508 -1 O VAL A 506 N PHE A 461 SHEET 4 AA1 4 ALA A 494 ASP A 498 -1 N SER A 497 O THR A 505 SHEET 1 AA2 5 ARG A 452 LEU A 454 0 SHEET 2 AA2 5 PHE A 532 LYS A 537 1 O LYS A 537 N ALA A 453 SHEET 3 AA2 5 GLY A 514 ILE A 522 -1 N HIS A 516 O VAL A 534 SHEET 4 AA2 5 VAL A 480 MET A 485 -1 N VAL A 483 O SER A 519 SHEET 5 AA2 5 LEU A 491 SER A 492 -1 O SER A 492 N LEU A 484 SHEET 1 AA3 4 ARG A 452 LEU A 454 0 SHEET 2 AA3 4 PHE A 532 LYS A 537 1 O LYS A 537 N ALA A 453 SHEET 3 AA3 4 GLY A 514 ILE A 522 -1 N HIS A 516 O VAL A 534 SHEET 4 AA3 4 GLN A 525 HIS A 526 -1 O GLN A 525 N ILE A 522 SHEET 1 AA4 4 ALA A 550 GLY A 553 0 SHEET 2 AA4 4 ARG A 820 MET A 823 -1 O ILE A 821 N PHE A 552 SHEET 3 AA4 4 ILE A 811 ASP A 815 -1 N ALA A 813 O LEU A 822 SHEET 4 AA4 4 PRO A 800 VAL A 805 -1 N ALA A 804 O VAL A 812 SHEET 1 AA5 4 ILE A 568 VAL A 570 0 SHEET 2 AA5 4 VAL A 576 ASP A 580 -1 O VAL A 577 N CYS A 569 SHEET 3 AA5 4 ARG A 585 PHE A 589 -1 O PHE A 589 N VAL A 576 SHEET 4 AA5 4 PHE A 595 PHE A 599 -1 O HIS A 597 N ILE A 588 SHEET 1 AA6 4 ALA A 616 CYS A 617 0 SHEET 2 AA6 4 ILE A 623 ASP A 627 -1 O ILE A 624 N ALA A 616 SHEET 3 AA6 4 ARG A 632 PHE A 636 -1 O GLN A 634 N VAL A 625 SHEET 4 AA6 4 PHE A 642 PHE A 646 -1 O PHE A 646 N ILE A 633 SHEET 1 AA7 4 PRO A 659 VAL A 664 0 SHEET 2 AA7 4 ILE A 670 ASP A 674 -1 O LEU A 671 N ALA A 663 SHEET 3 AA7 4 ARG A 679 PHE A 683 -1 O PHE A 683 N ILE A 670 SHEET 4 AA7 4 PHE A 689 GLY A 694 -1 O ASN A 691 N LEU A 682 SHEET 1 AA8 4 PRO A 706 PHE A 711 0 SHEET 2 AA8 4 LEU A 717 ASP A 721 -1 O VAL A 718 N ALA A 710 SHEET 3 AA8 4 ARG A 726 ILE A 730 -1 O ILE A 730 N LEU A 717 SHEET 4 AA8 4 ALA A 737 LEU A 740 -1 O LEU A 740 N LEU A 727 SHEET 1 AA9 2 SER A 742 GLU A 743 0 SHEET 2 AA9 2 GLN A 749 PHE A 750 1 O PHE A 750 N SER A 742 SHEET 1 AB1 4 PRO A 753 VAL A 758 0 SHEET 2 AB1 4 ILE A 764 ASP A 768 -1 O ILE A 765 N ALA A 757 SHEET 3 AB1 4 ARG A 773 PHE A 777 -1 O GLN A 775 N VAL A 766 SHEET 4 AB1 4 PHE A 783 PHE A 787 -1 O CYS A 785 N VAL A 776 SHEET 1 AB2 2 THR A 789 HIS A 790 0 SHEET 2 AB2 2 GLN A 796 MET A 797 1 O MET A 797 N THR A 789 CISPEP 1 SER A 530 PRO A 531 0 2.28 SITE 1 AC1 1 HIS A 678 SITE 1 AC2 1 GLU A 555 SITE 1 AC3 1 ASN A 653 SITE 1 AC4 1 GLY A 694 SITE 1 AC5 2 ARG A 726 HOH A1156 SITE 1 AC6 1 A B 9 CRYST1 101.850 101.850 109.890 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009818 0.005669 0.000000 0.00000 SCALE2 0.000000 0.011337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009100 0.00000