HEADER OXIDOREDUCTASE 15-FEB-18 6FQZ TITLE PLASMODIUM FALCIPARUM 6-PHOSPHOGLUCONATE DEHYDROGENASE IN ITS APO TITLE 2 FORM, IN COMPLEX WITH ITS COFACTOR NADP+ AND IN COMPLEX WITH ITS TITLE 3 SUBSTRATE 6-PHOSPHOGLUCONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.44; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF14_0520, PF3D7_1454700; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI M15; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1007065; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PLASMODIUM, COMPLEX, SUBSTRATE, REDOX REGULATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FRITZ-WOLF,K.HAEUSSLER,M.REICHMANN,S.RAHLFS,K.BECKER REVDAT 3 17-JAN-24 6FQZ 1 REMARK REVDAT 2 24-OCT-18 6FQZ 1 JRNL REVDAT 1 22-AUG-18 6FQZ 0 JRNL AUTH K.HAEUSSLER,K.FRITZ-WOLF,M.REICHMANN,S.RAHLFS,K.BECKER JRNL TITL CHARACTERIZATION OF PLASMODIUM FALCIPARUM 6-PHOSPHOGLUCONATE JRNL TITL 2 DEHYDROGENASE AS AN ANTIMALARIAL DRUG TARGET. JRNL REF J. MOL. BIOL. V. 430 4049 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 30098336 JRNL DOI 10.1016/J.JMB.2018.07.030 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2645: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 82501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.440 REMARK 3 FREE R VALUE TEST SET COUNT : 2009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4254 - 4.5783 1.00 6075 155 0.1824 0.2002 REMARK 3 2 4.5783 - 3.6343 1.00 5836 146 0.1613 0.2007 REMARK 3 3 3.6343 - 3.1750 1.00 5799 142 0.1809 0.2188 REMARK 3 4 3.1750 - 2.8847 1.00 5773 144 0.1895 0.1983 REMARK 3 5 2.8847 - 2.6780 1.00 5738 147 0.1998 0.2475 REMARK 3 6 2.6780 - 2.5201 1.00 5732 144 0.2043 0.2348 REMARK 3 7 2.5201 - 2.3939 1.00 5699 143 0.2174 0.2776 REMARK 3 8 2.3939 - 2.2897 1.00 5719 140 0.2230 0.2944 REMARK 3 9 2.2897 - 2.2015 1.00 5701 140 0.2320 0.2618 REMARK 3 10 2.2015 - 2.1256 1.00 5665 140 0.2570 0.2680 REMARK 3 11 2.1256 - 2.0591 1.00 5718 143 0.2716 0.3030 REMARK 3 12 2.0591 - 2.0002 1.00 5668 142 0.2904 0.3205 REMARK 3 13 2.0002 - 1.9476 1.00 5678 142 0.3239 0.3635 REMARK 3 14 1.9476 - 1.9001 1.00 5691 141 0.3530 0.3803 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7758 REMARK 3 ANGLE : 0.497 10424 REMARK 3 CHIRALITY : 0.040 1141 REMARK 3 PLANARITY : 0.003 1317 REMARK 3 DIHEDRAL : 3.026 6503 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2017 REMARK 200 DATA SCALING SOFTWARE : XSCALE 2017 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX SVN 7924 REMARK 200 STARTING MODEL: 6FQX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6PG-PF6PGD CRYSTALS WERE CRYSTALLIZED REMARK 280 WITH 24% PEG 1500 AND 20% GLYCEROL., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.52000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.26000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.26000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.52000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 626 O HOH B 658 4655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 51.53 -115.77 REMARK 500 ALA A 10 -178.96 -69.99 REMARK 500 ASN A 102 94.57 -67.00 REMARK 500 PRO A 439 21.51 -77.56 REMARK 500 THR A 454 164.05 66.01 REMARK 500 LEU B 9 52.70 -116.32 REMARK 500 PHE B 303 77.13 -109.74 REMARK 500 THR B 454 159.00 65.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6PG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6PG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FQX RELATED DB: PDB REMARK 900 SAME PROTEIN INT ITS APOFORM REMARK 900 RELATED ID: 6FQY RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH NADP+ DBREF 6FQZ A 1 468 UNP Q8IKT2 Q8IKT2_PLAF7 1 468 DBREF 6FQZ B 1 468 UNP Q8IKT2 Q8IKT2_PLAF7 1 468 SEQRES 1 A 468 MET CYS ASP ILE GLY LEU ILE GLY LEU ALA VAL MET GLY SEQRES 2 A 468 GLN ASN LEU SER LEU ASN ILE SER SER LYS GLY PHE LYS SEQRES 3 A 468 ILE GLY VAL TYR ASN ARG THR TYR GLU ARG THR GLU GLU SEQRES 4 A 468 THR MET LYS ARG ALA LYS GLU GLU ASN LEU VAL VAL TYR SEQRES 5 A 468 GLY TYR LYS THR VAL GLU GLU LEU ILE ASN ASN LEU LYS SEQRES 6 A 468 LYS PRO ARG LYS VAL ILE LEU LEU ILE LYS ALA GLY PRO SEQRES 7 A 468 ALA VAL ASP GLU ASN ILE SER ASN ILE LEU LYS HIS PHE SEQRES 8 A 468 GLU LYS GLY ASP ILE ILE ILE ASP GLY GLY ASN GLU TRP SEQRES 9 A 468 TYR ILE ASN SER GLU ARG ARG ILE LYS LEU CYS LYS GLU SEQRES 10 A 468 LYS ASP VAL GLU TYR LEU ALA MET GLY VAL SER GLY GLY SEQRES 11 A 468 GLU ALA GLY ALA ARG TYR GLY CYS SER PHE MET PRO GLY SEQRES 12 A 468 GLY SER LYS TYR ALA TYR ASP CYS VAL LYS GLU ILE LEU SEQRES 13 A 468 GLU LYS CYS SER ALA GLN VAL GLY ASN SER PRO CYS VAL SEQRES 14 A 468 THR TYR ILE GLY PRO GLY SER SER GLY ASN TYR VAL LYS SEQRES 15 A 468 MET VAL HIS ASN GLY ILE GLU TYR GLY ASP MET GLN LEU SEQRES 16 A 468 ILE SER GLU SER TYR VAL ILE MET LYS HIS ILE LEU LYS SEQRES 17 A 468 TYR ASP ASN GLN LYS LEU SER GLU VAL PHE ASN LYS TRP SEQRES 18 A 468 ASN GLU GLY ILE LEU ASN SER TYR LEU ILE GLU ILE THR SEQRES 19 A 468 ALA ASN ILE LEU ALA LYS LYS ASP ASP LEU THR ASN ASN SEQRES 20 A 468 TYR LEU VAL ASP MET ILE LEU ASP ILE ALA GLY ALA LYS SEQRES 21 A 468 GLY THR GLY LYS TRP THR MET LEU GLU ALA THR GLU ARG SEQRES 22 A 468 GLY ILE PRO CYS PRO THR MET CYS ALA ALA LEU ASP ALA SEQRES 23 A 468 ARG ASN ILE SER VAL PHE LYS GLU LEU ARG THR LYS ALA SEQRES 24 A 468 GLU SER ASN PHE ASN LYS ASP ASN ILE LEU ILE ASP PRO SEQRES 25 A 468 ASN GLU ASP LEU ASN ASP PHE GLU ASN ASP LEU LEU ASN SEQRES 26 A 468 ALA LEU TYR CYS CYS LYS ILE ILE SER TYR THR GLN GLY SEQRES 27 A 468 LEU PHE LEU LEU LYS GLN VAL SER GLU GLU MET ASN TRP SEQRES 28 A 468 LYS LEU ASN LEU GLY GLU ILE ALA ARG ILE TRP ARG GLY SEQRES 29 A 468 GLY CYS ILE ILE ARG ALA VAL PHE LEU ASP ARG ILE ALA SEQRES 30 A 468 ASN ALA TYR LYS ASN ASN GLU LYS LEU GLU LEU LEU PHE SEQRES 31 A 468 LEU ASP ASN GLU PHE SER ASP ASP ILE LYS ASN LYS LEU SEQRES 32 A 468 PRO SER LEU ARG LYS ILE VAL LEU MET ALA THR LYS TYR SEQRES 33 A 468 SER ILE PRO ILE PRO ALA PHE SER ALA SER LEU ALA TYR SEQRES 34 A 468 PHE GLN MET VAL THR SER GLN ASN LEU PRO LEU ASN LEU SEQRES 35 A 468 VAL GLN ALA GLN ARG ASP TYR PHE GLY SER HIS THR TYR SEQRES 36 A 468 ARG ARG THR ASP ARG GLU GLY ASN TYR HIS THR LEU TRP SEQRES 1 B 468 MET CYS ASP ILE GLY LEU ILE GLY LEU ALA VAL MET GLY SEQRES 2 B 468 GLN ASN LEU SER LEU ASN ILE SER SER LYS GLY PHE LYS SEQRES 3 B 468 ILE GLY VAL TYR ASN ARG THR TYR GLU ARG THR GLU GLU SEQRES 4 B 468 THR MET LYS ARG ALA LYS GLU GLU ASN LEU VAL VAL TYR SEQRES 5 B 468 GLY TYR LYS THR VAL GLU GLU LEU ILE ASN ASN LEU LYS SEQRES 6 B 468 LYS PRO ARG LYS VAL ILE LEU LEU ILE LYS ALA GLY PRO SEQRES 7 B 468 ALA VAL ASP GLU ASN ILE SER ASN ILE LEU LYS HIS PHE SEQRES 8 B 468 GLU LYS GLY ASP ILE ILE ILE ASP GLY GLY ASN GLU TRP SEQRES 9 B 468 TYR ILE ASN SER GLU ARG ARG ILE LYS LEU CYS LYS GLU SEQRES 10 B 468 LYS ASP VAL GLU TYR LEU ALA MET GLY VAL SER GLY GLY SEQRES 11 B 468 GLU ALA GLY ALA ARG TYR GLY CYS SER PHE MET PRO GLY SEQRES 12 B 468 GLY SER LYS TYR ALA TYR ASP CYS VAL LYS GLU ILE LEU SEQRES 13 B 468 GLU LYS CYS SER ALA GLN VAL GLY ASN SER PRO CYS VAL SEQRES 14 B 468 THR TYR ILE GLY PRO GLY SER SER GLY ASN TYR VAL LYS SEQRES 15 B 468 MET VAL HIS ASN GLY ILE GLU TYR GLY ASP MET GLN LEU SEQRES 16 B 468 ILE SER GLU SER TYR VAL ILE MET LYS HIS ILE LEU LYS SEQRES 17 B 468 TYR ASP ASN GLN LYS LEU SER GLU VAL PHE ASN LYS TRP SEQRES 18 B 468 ASN GLU GLY ILE LEU ASN SER TYR LEU ILE GLU ILE THR SEQRES 19 B 468 ALA ASN ILE LEU ALA LYS LYS ASP ASP LEU THR ASN ASN SEQRES 20 B 468 TYR LEU VAL ASP MET ILE LEU ASP ILE ALA GLY ALA LYS SEQRES 21 B 468 GLY THR GLY LYS TRP THR MET LEU GLU ALA THR GLU ARG SEQRES 22 B 468 GLY ILE PRO CYS PRO THR MET CYS ALA ALA LEU ASP ALA SEQRES 23 B 468 ARG ASN ILE SER VAL PHE LYS GLU LEU ARG THR LYS ALA SEQRES 24 B 468 GLU SER ASN PHE ASN LYS ASP ASN ILE LEU ILE ASP PRO SEQRES 25 B 468 ASN GLU ASP LEU ASN ASP PHE GLU ASN ASP LEU LEU ASN SEQRES 26 B 468 ALA LEU TYR CYS CYS LYS ILE ILE SER TYR THR GLN GLY SEQRES 27 B 468 LEU PHE LEU LEU LYS GLN VAL SER GLU GLU MET ASN TRP SEQRES 28 B 468 LYS LEU ASN LEU GLY GLU ILE ALA ARG ILE TRP ARG GLY SEQRES 29 B 468 GLY CYS ILE ILE ARG ALA VAL PHE LEU ASP ARG ILE ALA SEQRES 30 B 468 ASN ALA TYR LYS ASN ASN GLU LYS LEU GLU LEU LEU PHE SEQRES 31 B 468 LEU ASP ASN GLU PHE SER ASP ASP ILE LYS ASN LYS LEU SEQRES 32 B 468 PRO SER LEU ARG LYS ILE VAL LEU MET ALA THR LYS TYR SEQRES 33 B 468 SER ILE PRO ILE PRO ALA PHE SER ALA SER LEU ALA TYR SEQRES 34 B 468 PHE GLN MET VAL THR SER GLN ASN LEU PRO LEU ASN LEU SEQRES 35 B 468 VAL GLN ALA GLN ARG ASP TYR PHE GLY SER HIS THR TYR SEQRES 36 B 468 ARG ARG THR ASP ARG GLU GLY ASN TYR HIS THR LEU TRP HET 6PG A 501 17 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 6 HET PEG A 512 7 HET PEG A 513 7 HET 6PG B 501 17 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET GOL B 505 6 HET GOL B 506 6 HET GOL B 507 6 HET GOL B 508 6 HET GOL B 509 6 HET GOL B 510 6 HET PGE B 511 10 HET PEG B 512 7 HET PEG B 513 7 HETNAM 6PG 6-PHOSPHOGLUCONIC ACID HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 6PG 2(C6 H13 O10 P) FORMUL 4 GOL 19(C3 H8 O3) FORMUL 14 PEG 4(C4 H10 O3) FORMUL 26 PGE C6 H14 O4 FORMUL 29 HOH *273(H2 O) HELIX 1 AA1 ALA A 10 LYS A 23 1 14 HELIX 2 AA2 THR A 33 GLU A 47 1 15 HELIX 3 AA3 THR A 56 ASN A 63 1 8 HELIX 4 AA4 GLY A 77 LYS A 89 1 13 HELIX 5 AA5 TRP A 104 LYS A 118 1 15 HELIX 6 AA6 GLY A 129 GLY A 137 1 9 HELIX 7 AA7 SER A 145 SER A 160 1 16 HELIX 8 AA8 SER A 176 ILE A 206 1 31 HELIX 9 AA9 ASP A 210 GLU A 223 1 14 HELIX 10 AB1 SER A 228 LYS A 240 1 13 HELIX 11 AB2 TYR A 248 ILE A 253 5 6 HELIX 12 AB3 GLY A 261 GLY A 274 1 14 HELIX 13 AB4 CYS A 277 VAL A 291 1 15 HELIX 14 AB5 PHE A 292 PHE A 303 1 12 HELIX 15 AB6 ASP A 318 ASN A 350 1 33 HELIX 16 AB7 ASN A 354 TRP A 362 1 9 HELIX 17 AB8 VAL A 371 ASN A 383 1 13 HELIX 18 AB9 LEU A 388 LEU A 391 5 4 HELIX 19 AC1 ASP A 392 TYR A 416 1 25 HELIX 20 AC2 ILE A 420 THR A 434 1 15 HELIX 21 AC3 PRO A 439 SER A 452 1 14 HELIX 22 AC4 ALA B 10 LYS B 23 1 14 HELIX 23 AC5 THR B 33 GLU B 47 1 15 HELIX 24 AC6 THR B 56 ASN B 63 1 8 HELIX 25 AC7 GLY B 77 LYS B 89 1 13 HELIX 26 AC8 TRP B 104 LYS B 118 1 15 HELIX 27 AC9 GLY B 129 GLY B 137 1 9 HELIX 28 AD1 SER B 145 SER B 160 1 16 HELIX 29 AD2 SER B 176 ILE B 206 1 31 HELIX 30 AD3 ASP B 210 GLU B 223 1 14 HELIX 31 AD4 SER B 228 LYS B 240 1 13 HELIX 32 AD5 TYR B 248 ILE B 253 5 6 HELIX 33 AD6 GLY B 261 GLY B 274 1 14 HELIX 34 AD7 CYS B 277 PHE B 292 1 16 HELIX 35 AD8 PHE B 292 PHE B 303 1 12 HELIX 36 AD9 ASP B 318 ASN B 350 1 33 HELIX 37 AE1 ASN B 354 TRP B 362 1 9 HELIX 38 AE2 VAL B 371 ASN B 383 1 13 HELIX 39 AE3 LEU B 388 LEU B 391 5 4 HELIX 40 AE4 ASP B 392 TYR B 416 1 25 HELIX 41 AE5 ILE B 420 THR B 434 1 15 HELIX 42 AE6 PRO B 439 SER B 452 1 14 SHEET 1 AA1 7 TYR A 52 GLY A 53 0 SHEET 2 AA1 7 ILE A 27 TYR A 30 1 N VAL A 29 O TYR A 52 SHEET 3 AA1 7 ILE A 4 ILE A 7 1 N LEU A 6 O TYR A 30 SHEET 4 AA1 7 LYS A 69 LEU A 72 1 O ILE A 71 N GLY A 5 SHEET 5 AA1 7 ILE A 96 ASP A 99 1 O ILE A 98 N LEU A 72 SHEET 6 AA1 7 GLU A 121 SER A 128 1 O MET A 125 N ASP A 99 SHEET 7 AA1 7 SER A 139 GLY A 144 -1 O MET A 141 N GLY A 126 SHEET 1 AA2 2 GLN A 162 VAL A 163 0 SHEET 2 AA2 2 SER A 166 PRO A 167 -1 O SER A 166 N VAL A 163 SHEET 1 AA3 2 TYR A 455 ARG A 456 0 SHEET 2 AA3 2 ASN A 463 TYR A 464 -1 O TYR A 464 N TYR A 455 SHEET 1 AA4 7 TYR B 52 GLY B 53 0 SHEET 2 AA4 7 ILE B 27 TYR B 30 1 N VAL B 29 O TYR B 52 SHEET 3 AA4 7 ILE B 4 ILE B 7 1 N LEU B 6 O TYR B 30 SHEET 4 AA4 7 LYS B 69 LEU B 72 1 O ILE B 71 N ILE B 7 SHEET 5 AA4 7 ILE B 96 ASP B 99 1 O ILE B 98 N LEU B 72 SHEET 6 AA4 7 GLU B 121 SER B 128 1 O MET B 125 N ASP B 99 SHEET 7 AA4 7 SER B 139 GLY B 144 -1 O MET B 141 N GLY B 126 SHEET 1 AA5 2 GLN B 162 VAL B 163 0 SHEET 2 AA5 2 SER B 166 PRO B 167 -1 O SER B 166 N VAL B 163 SHEET 1 AA6 2 TYR B 455 ARG B 456 0 SHEET 2 AA6 2 ASN B 463 TYR B 464 -1 O TYR B 464 N TYR B 455 CISPEP 1 LYS A 66 PRO A 67 0 -0.21 CISPEP 2 LYS B 66 PRO B 67 0 -0.81 SITE 1 AC1 21 ASN A 102 SER A 128 GLY A 129 GLY A 130 SITE 2 AC1 21 LYS A 182 HIS A 185 ASN A 186 GLU A 189 SITE 3 AC1 21 TYR A 190 ALA A 259 LYS A 260 ARG A 287 SITE 4 AC1 21 ILE A 367 HOH A 609 HOH A 615 HOH A 617 SITE 5 AC1 21 HOH A 679 HOH A 685 ARG B 447 PHE B 450 SITE 6 AC1 21 HIS B 453 SITE 1 AC2 9 MET A 267 THR A 271 ILE A 275 PRO A 276 SITE 2 AC2 9 CYS A 277 MET B 267 LEU B 284 ASP B 285 SITE 3 AC2 9 ASN B 288 SITE 1 AC3 7 ILE A 188 CYS A 277 THR A 279 MET A 280 SITE 2 AC3 7 SER A 334 GLN A 337 GLY A 338 SITE 1 AC4 7 GLN A 444 ARG A 447 HIS A 453 THR A 454 SITE 2 AC4 7 HOH A 619 HOH A 655 LYS B 260 SITE 1 AC5 7 TYR A 455 ARG A 457 TYR A 464 THR A 466 SITE 2 AC5 7 GOL A 510 ASP B 243 LEU B 244 SITE 1 AC6 9 CYS A 281 ASP A 285 ASN A 288 ALA B 270 SITE 2 AC6 9 THR B 271 ILE B 275 PRO B 276 CYS B 277 SITE 3 AC6 9 CYS B 281 SITE 1 AC7 9 THR A 414 ILE A 418 PRO A 419 ILE A 420 SITE 2 AC7 9 SER A 424 VAL B 410 ALA B 428 GLN B 431 SITE 3 AC7 9 HOH B 604 SITE 1 AC8 3 TRP A 104 TRP A 265 GLU B 272 SITE 1 AC9 4 TRP A 468 HOH A 671 ARG B 460 GLU B 461 SITE 1 AD1 5 THR A 466 LEU A 467 GOL A 505 LYS B 240 SITE 2 AD1 5 ASP B 243 SITE 1 AD2 3 ASN A 31 ARG A 32 ASN A 83 SITE 1 AD3 2 GLY A 261 LYS A 264 SITE 1 AD4 8 CYS A 281 ALA A 282 ASP A 285 PRO A 421 SITE 2 AD4 8 SER A 424 CYS B 281 ASP B 285 ALA B 425 SITE 1 AD5 21 ARG A 447 PHE A 450 HIS A 453 HOH A 689 SITE 2 AD5 21 ASN B 102 SER B 128 GLY B 129 GLY B 130 SITE 3 AD5 21 LYS B 182 HIS B 185 ASN B 186 GLU B 189 SITE 4 AD5 21 TYR B 190 ALA B 259 LYS B 260 ARG B 287 SITE 5 AD5 21 ILE B 367 HOH B 627 HOH B 650 HOH B 678 SITE 6 AD5 21 HOH B 695 SITE 1 AD6 7 ALA A 428 GLN A 431 ALA B 413 THR B 414 SITE 2 AD6 7 ILE B 418 ILE B 420 SER B 424 SITE 1 AD7 5 CYS B 277 MET B 280 SER B 334 GLN B 337 SITE 2 AD7 5 GLY B 338 SITE 1 AD8 9 ASN A 437 LEU A 438 TYR B 200 VAL B 201 SITE 2 AD8 9 LYS B 204 HIS B 205 HOH B 609 HOH B 636 SITE 3 AD8 9 HOH B 704 SITE 1 AD9 7 ASP A 243 LEU A 244 TYR B 455 ARG B 457 SITE 2 AD9 7 THR B 466 HOH B 640 HOH B 693 SITE 1 AE1 6 HOH A 667 GLN B 444 ARG B 447 HIS B 453 SITE 2 AE1 6 THR B 454 HOH B 653 SITE 1 AE2 4 TYR A 449 GLU B 232 ARG B 369 GLU B 461 SITE 1 AE3 5 GLU A 300 SER B 435 GLN B 436 ASN B 437 SITE 2 AE3 5 HOH B 617 SITE 1 AE4 6 TYR B 171 ILE B 172 GLY B 173 TRP B 351 SITE 2 AE4 6 LYS B 352 HOH B 652 SITE 1 AE5 6 ASP A 243 LEU A 244 SER B 22 GLU B 47 SITE 2 AE5 6 LEU B 49 ARG B 135 SITE 1 AE6 3 ALA B 259 LYS B 264 TRP B 265 SITE 1 AE7 4 GLY B 462 ASN B 463 TYR B 464 HIS B 465 SITE 1 AE8 2 THR A 33 HOH B 605 CRYST1 99.660 99.660 180.780 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010034 0.005793 0.000000 0.00000 SCALE2 0.000000 0.011586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005532 0.00000