HEADER HYDROLASE 15-FEB-18 6FR2 TITLE SOLUBLE EPOXIDE HYDROLASE IN COMPLEX WITH LK864 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL EPOXIDE HYDROLASE 2; COMPND 3 CHAIN: A; COMPND 4 EC: 3.3.2.10,3.1.3.76; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, COMPLEX, SEH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.KRAMER,D.POGORYELOV,M.KRASAVIN,E.PROSCHAK REVDAT 3 17-JAN-24 6FR2 1 REMARK REVDAT 2 24-FEB-21 6FR2 1 REMARK REVDAT 1 12-SEP-18 6FR2 0 JRNL AUTH A.LUKIN,J.KRAMER,M.HARTMANN,L.WEIZEL,V.HERNANDEZ-OLMOS, JRNL AUTH 2 K.FALAHATI,I.BURGHARDT,N.KALINCHENKOVA,D.BAGNYUKOVA, JRNL AUTH 3 N.ZHURILO,J.RAUTIO,M.FORSBERG,J.IHALAINEN,S.AURIOLA, JRNL AUTH 4 J.LEPPANEN,I.KONSTANTINOV,D.POGORYELOV,E.PROSCHAK,D.DAR'IN, JRNL AUTH 5 M.KRASAVIN JRNL TITL DISCOVERY OF POLAR SPIROCYCLIC ORALLY BIOAVAILABLE UREA JRNL TITL 2 INHIBITORS OF SOLUBLE EPOXIDE HYDROLASE. JRNL REF BIOORG. CHEM. V. 80 655 2018 JRNL REFN ISSN 1090-2120 JRNL PMID 30059891 JRNL DOI 10.1016/J.BIOORG.2018.07.014 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 35259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0996 - 5.3152 0.99 2593 133 0.1642 0.2014 REMARK 3 2 5.3152 - 4.2197 0.99 2560 179 0.1296 0.1677 REMARK 3 3 4.2197 - 3.6866 0.98 2534 166 0.1365 0.1661 REMARK 3 4 3.6866 - 3.3496 0.99 2597 146 0.1459 0.2065 REMARK 3 5 3.3496 - 3.1096 1.00 2597 130 0.1678 0.2036 REMARK 3 6 3.1096 - 2.9263 1.00 2609 155 0.1757 0.3036 REMARK 3 7 2.9263 - 2.7798 1.00 2619 96 0.1883 0.2219 REMARK 3 8 2.7798 - 2.6588 0.99 2607 133 0.2020 0.2674 REMARK 3 9 2.6588 - 2.5564 1.00 2606 120 0.2060 0.2516 REMARK 3 10 2.5564 - 2.4682 1.00 2631 132 0.2296 0.2516 REMARK 3 11 2.4682 - 2.3911 1.00 2561 140 0.2432 0.3240 REMARK 3 12 2.3911 - 2.3227 1.00 2627 129 0.2653 0.2859 REMARK 3 13 2.3227 - 2.2616 0.90 2342 117 0.3071 0.3418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2710 REMARK 3 ANGLE : 0.955 3688 REMARK 3 CHIRALITY : 0.060 379 REMARK 3 PLANARITY : 0.007 474 REMARK 3 DIHEDRAL : 25.429 1010 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6249 -7.1319 -34.1435 REMARK 3 T TENSOR REMARK 3 T11: 0.2202 T22: 0.2227 REMARK 3 T33: 0.2385 T12: -0.0026 REMARK 3 T13: 0.0255 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.4883 L22: 0.7117 REMARK 3 L33: 0.3092 L12: 0.7476 REMARK 3 L13: -0.0650 L23: -0.1065 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0116 S13: 0.0528 REMARK 3 S21: -0.0291 S22: 0.0155 S23: -0.0579 REMARK 3 S31: 0.0330 S32: -0.0023 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2884 -15.7093 -37.4347 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.3087 REMARK 3 T33: 0.3373 T12: -0.0127 REMARK 3 T13: 0.0520 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.3110 L22: 0.1616 REMARK 3 L33: 0.2562 L12: 0.2036 REMARK 3 L13: -0.1012 L23: 0.1808 REMARK 3 S TENSOR REMARK 3 S11: -0.1446 S12: -0.0177 S13: -0.0216 REMARK 3 S21: -0.0278 S22: 0.0231 S23: -0.1889 REMARK 3 S31: 0.0115 S32: 0.0685 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8212 -23.0067 -27.1340 REMARK 3 T TENSOR REMARK 3 T11: 0.2401 T22: 0.2903 REMARK 3 T33: 0.3705 T12: 0.0034 REMARK 3 T13: -0.0046 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.3201 L22: 0.0663 REMARK 3 L33: 0.4912 L12: 0.0507 REMARK 3 L13: -0.0404 L23: 0.2002 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: -0.2259 S13: -0.2133 REMARK 3 S21: 0.0215 S22: 0.0303 S23: -0.2012 REMARK 3 S31: 0.0632 S32: -0.0537 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 399 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3053 -31.3425 -45.1712 REMARK 3 T TENSOR REMARK 3 T11: 0.5637 T22: 0.3929 REMARK 3 T33: 0.4214 T12: -0.0869 REMARK 3 T13: 0.0484 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.2713 L22: 0.2135 REMARK 3 L33: 0.0449 L12: 0.0821 REMARK 3 L13: 0.0992 L23: 0.0262 REMARK 3 S TENSOR REMARK 3 S11: -0.2738 S12: 0.2211 S13: -0.3432 REMARK 3 S21: -0.3410 S22: 0.1576 S23: -0.0663 REMARK 3 S31: 0.3942 S32: -0.3891 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 400 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0625 -18.8325 -44.1364 REMARK 3 T TENSOR REMARK 3 T11: 0.4387 T22: 0.4189 REMARK 3 T33: 0.4011 T12: -0.0433 REMARK 3 T13: -0.0736 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.1158 L22: 0.0579 REMARK 3 L33: 0.0048 L12: 0.0051 REMARK 3 L13: -0.0561 L23: 0.0629 REMARK 3 S TENSOR REMARK 3 S11: 0.1155 S12: -0.1004 S13: -0.1432 REMARK 3 S21: -0.1951 S22: 0.0782 S23: 0.4641 REMARK 3 S31: 0.1648 S32: 0.1270 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5846 -28.3296 -48.5732 REMARK 3 T TENSOR REMARK 3 T11: 0.7719 T22: 0.7208 REMARK 3 T33: 0.7253 T12: -0.1121 REMARK 3 T13: -0.1203 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 0.0612 L22: 0.0299 REMARK 3 L33: 0.0693 L12: 0.0340 REMARK 3 L13: -0.0039 L23: 0.1146 REMARK 3 S TENSOR REMARK 3 S11: -0.1248 S12: -0.0381 S13: -0.4049 REMARK 3 S21: -0.3272 S22: 0.1865 S23: 0.0546 REMARK 3 S31: 0.0440 S32: -0.4081 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 509 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4401 -22.3832 -35.1620 REMARK 3 T TENSOR REMARK 3 T11: 0.2993 T22: 0.2419 REMARK 3 T33: 0.2392 T12: -0.0135 REMARK 3 T13: 0.0121 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.9913 L22: 1.1227 REMARK 3 L33: 0.6097 L12: 0.0661 REMARK 3 L13: 0.1301 L23: -0.1306 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: -0.0544 S13: -0.1275 REMARK 3 S21: -0.1108 S22: 0.0134 S23: -0.0435 REMARK 3 S31: 0.0675 S32: -0.0676 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 510 THROUGH 530 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9137 -19.8895 -24.4577 REMARK 3 T TENSOR REMARK 3 T11: 0.3508 T22: 0.4221 REMARK 3 T33: 0.3879 T12: -0.0270 REMARK 3 T13: 0.0333 T23: 0.0635 REMARK 3 L TENSOR REMARK 3 L11: 0.3250 L22: 0.4341 REMARK 3 L33: 0.0740 L12: -0.2097 REMARK 3 L13: -0.2247 L23: 0.3601 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.2008 S13: 0.0156 REMARK 3 S21: 0.0061 S22: 0.0412 S23: 0.1788 REMARK 3 S31: -0.0501 S32: -0.1574 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 531 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1672 -10.4860 -18.8647 REMARK 3 T TENSOR REMARK 3 T11: 0.3921 T22: 0.4543 REMARK 3 T33: 0.3113 T12: 0.0210 REMARK 3 T13: 0.0013 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.0966 L22: 0.3126 REMARK 3 L33: 0.3010 L12: -0.0499 REMARK 3 L13: -0.2172 L23: 0.1357 REMARK 3 S TENSOR REMARK 3 S11: -0.1270 S12: -0.4046 S13: 0.2106 REMARK 3 S21: 0.2733 S22: 0.1594 S23: 0.0719 REMARK 3 S31: -0.3123 S32: -0.1852 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.55 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : 1.072 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35335 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 46.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.98 REMARK 200 R MERGE FOR SHELL (I) : 0.78800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4JNC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL PROTEIN SOLUTION PROTEIN (5-10 REMARK 280 MG/ML , 50 MM NACL, 50 MM SODIUM PHOSPHATE, 10% GLYCEROL (98%), REMARK 280 2 MM DTT AT PH 7.4) WAS MIXED IN DIFFERENT RATIOS (2/1, 1/1, 1/2) REMARK 280 WITH PRECIPITANT SOLUTION (23 %-28 % (W/V) POLYETHYLENGLYCOL REMARK 280 (PEG) 6000, 70 MM AMMONIUM ACETAT, 200 MM MAGNESIUM ACETAT, 100 REMARK 280 MM SODIUM CACODYLATE AT PH 6.1-6.5), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.04550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.09000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.49900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.04550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.09000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.49900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.04550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.09000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.49900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.04550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.09000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.49900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 786 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 219 REMARK 465 ALA A 220 REMARK 465 SER A 221 REMARK 465 LEU A 222 REMARK 465 ASN A 223 REMARK 465 THR A 224 REMARK 465 PRO A 225 REMARK 465 ALA A 226 REMARK 465 PRO A 227 REMARK 465 LEU A 228 REMARK 465 ASN A 548 REMARK 465 PRO A 549 REMARK 465 PRO A 550 REMARK 465 VAL A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 LYS A 554 REMARK 465 MET A 555 REMARK 465 LEU A 556 REMARK 465 LEU A 557 REMARK 465 GLU A 558 REMARK 465 HIS A 559 REMARK 465 HIS A 560 REMARK 465 HIS A 561 REMARK 465 HIS A 562 REMARK 465 HIS A 563 REMARK 465 HIS A 564 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 TRP A 510 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 510 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 231 -163.54 -109.47 REMARK 500 GLU A 269 -140.87 -119.91 REMARK 500 ASP A 335 -129.92 64.74 REMARK 500 ASN A 359 -43.80 77.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 291 ASP A 292 147.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 509 OD1 REMARK 620 2 ASP A 509 OD2 57.2 REMARK 620 3 HOH A 802 O 95.7 95.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E3N A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 DBREF 6FR2 A 222 555 UNP P34913 HYES_HUMAN 169 502 SEQADV 6FR2 MET A 219 UNP P34913 INITIATING METHIONINE SEQADV 6FR2 ALA A 220 UNP P34913 EXPRESSION TAG SEQADV 6FR2 SER A 221 UNP P34913 EXPRESSION TAG SEQADV 6FR2 LEU A 556 UNP P34913 EXPRESSION TAG SEQADV 6FR2 LEU A 557 UNP P34913 EXPRESSION TAG SEQADV 6FR2 GLU A 558 UNP P34913 EXPRESSION TAG SEQADV 6FR2 HIS A 559 UNP P34913 EXPRESSION TAG SEQADV 6FR2 HIS A 560 UNP P34913 EXPRESSION TAG SEQADV 6FR2 HIS A 561 UNP P34913 EXPRESSION TAG SEQADV 6FR2 HIS A 562 UNP P34913 EXPRESSION TAG SEQADV 6FR2 HIS A 563 UNP P34913 EXPRESSION TAG SEQADV 6FR2 HIS A 564 UNP P34913 EXPRESSION TAG SEQRES 1 A 346 MET ALA SER LEU ASN THR PRO ALA PRO LEU PRO THR SER SEQRES 2 A 346 CYS ASN PRO SER ASP MET SER HIS GLY TYR VAL THR VAL SEQRES 3 A 346 LYS PRO ARG VAL ARG LEU HIS PHE VAL GLU LEU GLY SER SEQRES 4 A 346 GLY PRO ALA VAL CYS LEU CYS HIS GLY PHE PRO GLU SER SEQRES 5 A 346 TRP TYR SER TRP ARG TYR GLN ILE PRO ALA LEU ALA GLN SEQRES 6 A 346 ALA GLY TYR ARG VAL LEU ALA MET ASP MET LYS GLY TYR SEQRES 7 A 346 GLY GLU SER SER ALA PRO PRO GLU ILE GLU GLU TYR CYS SEQRES 8 A 346 MET GLU VAL LEU CYS LYS GLU MET VAL THR PHE LEU ASP SEQRES 9 A 346 LYS LEU GLY LEU SER GLN ALA VAL PHE ILE GLY HIS ASP SEQRES 10 A 346 TRP GLY GLY MET LEU VAL TRP TYR MET ALA LEU PHE TYR SEQRES 11 A 346 PRO GLU ARG VAL ARG ALA VAL ALA SER LEU ASN THR PRO SEQRES 12 A 346 PHE ILE PRO ALA ASN PRO ASN MET SER PRO LEU GLU SER SEQRES 13 A 346 ILE LYS ALA ASN PRO VAL PHE ASP TYR GLN LEU TYR PHE SEQRES 14 A 346 GLN GLU PRO GLY VAL ALA GLU ALA GLU LEU GLU GLN ASN SEQRES 15 A 346 LEU SER ARG THR PHE LYS SER LEU PHE ARG ALA SER ASP SEQRES 16 A 346 GLU SER VAL LEU SER MET HIS LYS VAL CYS GLU ALA GLY SEQRES 17 A 346 GLY LEU PHE VAL ASN SER PRO GLU GLU PRO SER LEU SER SEQRES 18 A 346 ARG MET VAL THR GLU GLU GLU ILE GLN PHE TYR VAL GLN SEQRES 19 A 346 GLN PHE LYS LYS SER GLY PHE ARG GLY PRO LEU ASN TRP SEQRES 20 A 346 TYR ARG ASN MET GLU ARG ASN TRP LYS TRP ALA CYS LYS SEQRES 21 A 346 SER LEU GLY ARG LYS ILE LEU ILE PRO ALA LEU MET VAL SEQRES 22 A 346 THR ALA GLU LYS ASP PHE VAL LEU VAL PRO GLN MET SER SEQRES 23 A 346 GLN HIS MET GLU ASP TRP ILE PRO HIS LEU LYS ARG GLY SEQRES 24 A 346 HIS ILE GLU ASP CYS GLY HIS TRP THR GLN MET ASP LYS SEQRES 25 A 346 PRO THR GLU VAL ASN GLN ILE LEU ILE LYS TRP LEU ASP SEQRES 26 A 346 SER ASP ALA ARG ASN PRO PRO VAL VAL SER LYS MET LEU SEQRES 27 A 346 LEU GLU HIS HIS HIS HIS HIS HIS HET E3N A 601 33 HET MG A 602 1 HETNAM E3N 1-[(4~{S})-9-PROPAN-2-YLSULFONYL-1-OXA-9- HETNAM 2 E3N AZASPIRO[5.5]UNDECAN-4-YL]-3-[[4-(TRIFLUOROMETHYLOXY) HETNAM 3 E3N PHENYL]METHYL]UREA HETNAM MG MAGNESIUM ION FORMUL 2 E3N C21 H30 F3 N3 O5 S FORMUL 3 MG MG 2+ FORMUL 4 HOH *107(H2 O) HELIX 1 AA1 ASN A 233 MET A 237 5 5 HELIX 2 AA2 SER A 270 ARG A 275 5 6 HELIX 3 AA3 GLN A 277 ALA A 284 1 8 HELIX 4 AA4 GLU A 304 TYR A 308 5 5 HELIX 5 AA5 CYS A 309 LEU A 324 1 16 HELIX 6 AA6 ASP A 335 TYR A 348 1 14 HELIX 7 AA7 SER A 370 ALA A 377 1 8 HELIX 8 AA8 ASN A 378 PHE A 381 5 4 HELIX 9 AA9 ASP A 382 PHE A 387 1 6 HELIX 10 AB1 GLY A 391 ASN A 400 1 10 HELIX 11 AB2 ASN A 400 PHE A 409 1 10 HELIX 12 AB3 ALA A 411 SER A 415 5 5 HELIX 13 AB4 SER A 418 HIS A 420 5 3 HELIX 14 AB5 LYS A 421 GLY A 426 1 6 HELIX 15 AB6 THR A 443 LYS A 455 1 13 HELIX 16 AB7 PHE A 459 ASN A 464 1 6 HELIX 17 AB8 TRP A 465 ARG A 467 5 3 HELIX 18 AB9 ASN A 468 LYS A 478 1 11 HELIX 19 AC1 VAL A 500 GLN A 505 5 6 HELIX 20 AC2 HIS A 506 TRP A 510 5 5 HELIX 21 AC3 TRP A 525 LYS A 530 1 6 HELIX 22 AC4 LYS A 530 ALA A 546 1 17 SHEET 1 AA1 8 SER A 238 LYS A 245 0 SHEET 2 AA1 8 VAL A 248 LEU A 255 -1 O PHE A 252 N GLY A 240 SHEET 3 AA1 8 ARG A 287 MET A 291 -1 O VAL A 288 N LEU A 255 SHEET 4 AA1 8 ALA A 260 CYS A 264 1 N VAL A 261 O ARG A 287 SHEET 5 AA1 8 ALA A 329 HIS A 334 1 O VAL A 330 N CYS A 262 SHEET 6 AA1 8 VAL A 352 LEU A 358 1 O LEU A 358 N GLY A 333 SHEET 7 AA1 8 ALA A 488 ALA A 493 1 O VAL A 491 N SER A 357 SHEET 8 AA1 8 LEU A 514 ILE A 519 1 O LYS A 515 N ALA A 488 LINK OD1 ASP A 509 MG MG A 602 1555 1555 2.36 LINK OD2 ASP A 509 MG MG A 602 1555 1555 2.24 LINK MG MG A 602 O HOH A 802 1555 1555 2.65 CISPEP 1 PHE A 267 PRO A 268 0 -10.38 SITE 1 AC1 16 ASP A 335 TRP A 336 MET A 339 ILE A 375 SITE 2 AC1 16 PHE A 381 TYR A 383 GLN A 384 SER A 415 SITE 3 AC1 16 MET A 419 TYR A 466 MET A 469 VAL A 498 SITE 4 AC1 16 HIS A 524 TRP A 525 HOH A 717 HOH A 805 SITE 1 AC2 3 HIS A 506 ASP A 509 HOH A 802 CRYST1 80.091 92.180 106.998 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009346 0.00000