HEADER IMMUNE SYSTEM 15-FEB-18 6FR7 TITLE HA1.7 HUMAN T-CELL RECEPTOR SPECIFIC FOR INFLUENZA VIRUS EPITOPE TITLE 2 PKYVKQNTLKLAT PRESENTED BY HUMAN LEUKOCYTE ANTIGEN HLA-DR0101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL RECEPTOR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T-CELL RCECEPTOR BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN T CELL RECEPTOR, HUMAN LEUKOCUTE ANTIGEN, INFLUENZA KEYWDS 2 HAEMAGGLUTININ EPITOPE, 3D STRUCTURE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.K.COLE REVDAT 3 17-JAN-24 6FR7 1 REMARK REVDAT 2 09-MAY-18 6FR7 1 COMPND JRNL HETNAM REVDAT 1 18-APR-18 6FR7 0 JRNL AUTH C.J.HOLLAND,B.J.MACLACHLAN,V.BIANCHI,S.J.HESKETH,R.MORGAN, JRNL AUTH 2 O.VICKERY,A.M.BULEK,A.FULLER,A.GODKIN,A.K.SEWELL, JRNL AUTH 3 P.J.RIZKALLAH,S.WELLS,D.K.COLE JRNL TITL IN SILICOAND STRUCTURAL ANALYSES DEMONSTRATE THAT INTRINSIC JRNL TITL 2 PROTEIN MOTIONS GUIDE T CELL RECEPTOR COMPLEMENTARITY JRNL TITL 3 DETERMINING REGION LOOP FLEXIBILITY. JRNL REF FRONT IMMUNOL V. 9 674 2018 JRNL REFN ESSN 1664-3224 JRNL PMID 29696015 JRNL DOI 10.3389/FIMMU.2018.00674 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 20191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1482 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33000 REMARK 3 B22 (A**2) : 3.28000 REMARK 3 B33 (A**2) : -4.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.414 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.279 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.250 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.135 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3649 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3222 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4956 ; 1.938 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7512 ; 1.102 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 8.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;39.231 ;24.244 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 601 ;20.195 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;21.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4069 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 770 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1786 ; 0.307 ; 0.950 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1785 ; 0.307 ; 0.950 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2233 ; 0.557 ; 1.422 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2234 ; 0.557 ; 1.423 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1863 ; 0.572 ; 1.001 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1855 ; 0.263 ; 0.968 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2711 ; 0.447 ; 1.439 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3766 ; 5.994 ;10.835 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3763 ; 5.923 ;10.766 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7375 5.7698 108.7021 REMARK 3 T TENSOR REMARK 3 T11: 0.2925 T22: 0.0081 REMARK 3 T33: 0.5488 T12: -0.0147 REMARK 3 T13: 0.0088 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 3.0588 L22: 3.1514 REMARK 3 L33: 8.7757 L12: 0.0821 REMARK 3 L13: -0.0444 L23: 0.2355 REMARK 3 S TENSOR REMARK 3 S11: -0.0685 S12: 0.0907 S13: 0.0439 REMARK 3 S21: 0.1822 S22: -0.0368 S23: 0.1344 REMARK 3 S31: -0.2189 S32: -0.1917 S33: 0.1053 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9819 3.7430 78.7268 REMARK 3 T TENSOR REMARK 3 T11: 0.6205 T22: 0.6646 REMARK 3 T33: 0.5319 T12: -0.0502 REMARK 3 T13: -0.0093 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 7.4439 L22: 4.0517 REMARK 3 L33: 4.9301 L12: -0.4036 REMARK 3 L13: -0.8000 L23: -0.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: 0.1936 S13: -0.2860 REMARK 3 S21: -0.2712 S22: 0.0165 S23: -0.3576 REMARK 3 S31: 0.2122 S32: 0.4996 S33: 0.0081 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2851 9.9178 119.9129 REMARK 3 T TENSOR REMARK 3 T11: 0.3263 T22: 0.5235 REMARK 3 T33: 0.5102 T12: -0.0785 REMARK 3 T13: -0.0838 T23: 0.1018 REMARK 3 L TENSOR REMARK 3 L11: 5.2909 L22: 4.9823 REMARK 3 L33: 3.1825 L12: -2.9528 REMARK 3 L13: -1.3335 L23: 1.7630 REMARK 3 S TENSOR REMARK 3 S11: -0.1847 S12: -0.0694 S13: 0.2654 REMARK 3 S21: 0.2282 S22: 0.1596 S23: -0.4541 REMARK 3 S31: -0.1999 S32: 1.1284 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4904 13.5431 90.1248 REMARK 3 T TENSOR REMARK 3 T11: 0.4679 T22: 0.8247 REMARK 3 T33: 0.5855 T12: -0.1777 REMARK 3 T13: 0.0213 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.9650 L22: 1.5771 REMARK 3 L33: 4.4914 L12: -0.5291 REMARK 3 L13: 2.0943 L23: -0.2214 REMARK 3 S TENSOR REMARK 3 S11: -0.2168 S12: -0.1988 S13: 0.1441 REMARK 3 S21: -0.2369 S22: 0.0486 S23: -0.2482 REMARK 3 S31: -0.2826 S32: 0.3869 S33: 0.1682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21302 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 72.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.86200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EH8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KSCN, 0.1M BIS-TRIS, 20% PEG3350, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.92500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 155 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 30 OG1 THR B 96 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 68 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 186 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 51 -1.06 81.43 REMARK 500 GLU A 70 -164.68 -65.41 REMARK 500 PHE A 73 63.02 -152.95 REMARK 500 ALA A 86 174.58 170.90 REMARK 500 GLN A 150 168.10 -48.97 REMARK 500 ASP A 155 24.38 -74.71 REMARK 500 ALA A 190 -34.42 -132.46 REMARK 500 ASN A 192 -8.43 -141.32 REMARK 500 SER A 194 77.87 26.84 REMARK 500 GLU A 198 46.25 -83.98 REMARK 500 SER B 87 -177.92 -173.97 REMARK 500 PRO B 99 30.11 -90.47 REMARK 500 PRO B 151 -176.43 -67.48 REMARK 500 ASP B 152 72.53 -69.09 REMARK 500 GLN B 179 74.02 -119.39 REMARK 500 PRO B 180 13.38 -66.65 REMARK 500 GLN B 201 37.03 -95.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 71 SER A 72 -145.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 DBREF 6FR7 A 0 202 PDB 6FR7 6FR7 0 202 DBREF 6FR7 B 2 242 PDB 6FR7 6FR7 2 242 SEQRES 1 A 203 MET GLN SER VAL THR GLN LEU GLY SER HIS VAL SER VAL SEQRES 2 A 203 SER GLU GLY ALA LEU VAL LEU LEU ARG CYS ASN TYR SER SEQRES 3 A 203 SER SER VAL PRO PRO TYR LEU PHE TRP TYR VAL GLN TYR SEQRES 4 A 203 PRO ASN GLN GLY LEU GLN LEU LEU LEU LYS TYR THR SER SEQRES 5 A 203 ALA ALA THR LEU VAL LYS GLY ILE ASN GLY PHE GLU ALA SEQRES 6 A 203 GLU PHE LYS LYS SER GLU THR SER PHE HIS LEU THR LYS SEQRES 7 A 203 PRO SER ALA HIS MET SER ASP ALA ALA GLU TYR PHE CYS SEQRES 8 A 203 ALA VAL SER GLU SER PRO PHE GLY ASN GLU LYS LEU THR SEQRES 9 A 203 PHE GLY THR GLY THR ARG LEU THR ILE ILE PRO ASN ILE SEQRES 10 A 203 GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER SEQRES 11 A 203 LYS SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE SEQRES 12 A 203 ASP SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP SEQRES 13 A 203 VAL TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER SEQRES 14 A 203 MET ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN SEQRES 15 A 203 LYS SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER SEQRES 16 A 203 ILE ILE PRO GLU ASP THR PHE PHE SEQRES 1 B 241 VAL LYS VAL THR GLN SER SER ARG TYR LEU VAL LYS ARG SEQRES 2 B 241 THR GLY GLU LYS VAL PHE LEU GLU CYS VAL GLN ASP MET SEQRES 3 B 241 ASP HIS GLU ASN MET PHE TRP TYR ARG GLN ASP PRO GLY SEQRES 4 B 241 LEU GLY LEU ARG LEU ILE TYR PHE SER TYR ASP VAL LYS SEQRES 5 B 241 MET LYS GLU LYS GLY ASP ILE PRO GLU GLY TYR SER VAL SEQRES 6 B 241 SER ARG GLU LYS LYS GLU ARG PHE SER LEU ILE LEU GLU SEQRES 7 B 241 SER ALA SER THR ASN GLN THR SER MET TYR LEU CYS ALA SEQRES 8 B 241 SER SER SER THR GLY LEU PRO TYR GLY TYR THR PHE GLY SEQRES 9 B 241 SER GLY THR ARG LEU THR VAL VAL GLU ASP LEU ASN LYS SEQRES 10 B 241 VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU SEQRES 11 B 241 ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS SEQRES 12 B 241 LEU ALA THR GLY PHE PHE PRO ASP HIS VAL GLU LEU SER SEQRES 13 B 241 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS SEQRES 14 B 241 THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN SEQRES 15 B 241 ASP SER ARG TYR SER LEU SER SER ARG LEU ARG VAL SER SEQRES 16 B 241 ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS SEQRES 17 B 241 GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP SEQRES 18 B 241 THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER SEQRES 19 B 241 ALA GLU ALA TRP GLY ARG ALA HET EDO A 301 4 HET SO4 A 302 5 HET SO4 A 303 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *59(H2 O) HELIX 1 AA1 ILE A 59 GLY A 61 5 3 HELIX 2 AA2 HIS A 81 ALA A 85 5 5 HELIX 3 AA3 ASP B 115 VAL B 119 5 5 HELIX 4 AA4 SER B 130 GLN B 138 1 9 HELIX 5 AA5 ALA B 197 GLN B 201 1 5 SHEET 1 AA1 2 GLN A 1 THR A 4 0 SHEET 2 AA1 2 ASN A 23 SER A 26 -1 O ASN A 23 N THR A 4 SHEET 1 AA2 5 HIS A 9 SER A 13 0 SHEET 2 AA2 5 THR A 108 ILE A 113 1 O THR A 111 N VAL A 10 SHEET 3 AA2 5 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 110 SHEET 4 AA2 5 TYR A 31 GLN A 37 -1 N TYR A 35 O PHE A 89 SHEET 5 AA2 5 LEU A 43 TYR A 49 -1 O LEU A 46 N TRP A 34 SHEET 1 AA3 4 HIS A 9 SER A 13 0 SHEET 2 AA3 4 THR A 108 ILE A 113 1 O THR A 111 N VAL A 10 SHEET 3 AA3 4 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 110 SHEET 4 AA3 4 THR A 103 PHE A 104 -1 O THR A 103 N VAL A 92 SHEET 1 AA4 4 VAL A 18 LEU A 20 0 SHEET 2 AA4 4 SER A 72 LYS A 77 -1 O LEU A 75 N LEU A 20 SHEET 3 AA4 4 GLU A 63 LYS A 67 -1 N GLU A 63 O THR A 76 SHEET 4 AA4 4 LEU A 55 LYS A 57 -1 N VAL A 56 O ALA A 64 SHEET 1 AA5 3 TYR A 157 ILE A 158 0 SHEET 2 AA5 3 PHE A 171 SER A 180 -1 O TRP A 179 N TYR A 157 SHEET 3 AA5 3 CYS A 162 MET A 166 -1 N MET A 166 O PHE A 171 SHEET 1 AA6 5 TYR A 157 ILE A 158 0 SHEET 2 AA6 5 PHE A 171 SER A 180 -1 O TRP A 179 N TYR A 157 SHEET 3 AA6 5 SER A 135 THR A 140 -1 N CYS A 137 O ALA A 178 SHEET 4 AA6 5 ALA A 122 ARG A 127 -1 N TYR A 124 O LEU A 138 SHEET 5 AA6 5 THR A 200 PHE A 201 1 O THR A 200 N VAL A 123 SHEET 1 AA7 2 VAL B 4 GLN B 6 0 SHEET 2 AA7 2 CYS B 23 GLN B 25 -1 O VAL B 24 N THR B 5 SHEET 1 AA8 6 TYR B 10 ARG B 14 0 SHEET 2 AA8 6 THR B 108 VAL B 113 1 O VAL B 113 N LYS B 13 SHEET 3 AA8 6 SER B 87 SER B 94 -1 N TYR B 89 O THR B 108 SHEET 4 AA8 6 ASN B 31 ASP B 38 -1 N ASN B 31 O SER B 94 SHEET 5 AA8 6 GLY B 42 SER B 49 -1 O TYR B 47 N TRP B 34 SHEET 6 AA8 6 GLU B 56 LYS B 57 -1 O GLU B 56 N PHE B 48 SHEET 1 AA9 4 TYR B 10 ARG B 14 0 SHEET 2 AA9 4 THR B 108 VAL B 113 1 O VAL B 113 N LYS B 13 SHEET 3 AA9 4 SER B 87 SER B 94 -1 N TYR B 89 O THR B 108 SHEET 4 AA9 4 THR B 103 PHE B 104 -1 O THR B 103 N SER B 93 SHEET 1 AB1 3 VAL B 19 LEU B 21 0 SHEET 2 AB1 3 SER B 75 LEU B 78 -1 O LEU B 76 N LEU B 21 SHEET 3 AB1 3 TYR B 64 SER B 67 -1 N SER B 67 O SER B 75 SHEET 1 AB2 4 GLU B 123 PHE B 127 0 SHEET 2 AB2 4 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 3 AB2 4 TYR B 187 SER B 196 -1 O TYR B 187 N PHE B 149 SHEET 4 AB2 4 VAL B 169 THR B 171 -1 N CYS B 170 O ARG B 192 SHEET 1 AB3 4 GLU B 123 PHE B 127 0 SHEET 2 AB3 4 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 3 AB3 4 TYR B 187 SER B 196 -1 O TYR B 187 N PHE B 149 SHEET 4 AB3 4 LEU B 176 LYS B 177 -1 N LEU B 176 O SER B 188 SHEET 1 AB4 4 GLU B 164 VAL B 165 0 SHEET 2 AB4 4 VAL B 154 VAL B 160 -1 N TRP B 158 O VAL B 165 SHEET 3 AB4 4 HIS B 206 PHE B 213 -1 O GLN B 210 N SER B 157 SHEET 4 AB4 4 GLN B 232 TRP B 239 -1 O GLN B 232 N PHE B 213 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.02 SSBOND 2 CYS A 137 CYS A 187 1555 1555 2.08 SSBOND 3 CYS A 162 CYS B 170 1555 1555 2.07 SSBOND 4 CYS B 23 CYS B 91 1555 1555 2.02 SSBOND 5 CYS B 144 CYS B 209 1555 1555 2.04 CISPEP 1 PHE B 150 PRO B 151 0 -14.74 SITE 1 AC1 6 LEU A 6 GLY A 7 VAL A 10 LEU A 19 SITE 2 AC1 6 ARG A 21 THR A 108 SITE 1 AC2 6 SER A 2 VAL A 3 THR A 4 ASN A 23 SITE 2 AC2 6 TYR A 24 SER A 25 SITE 1 AC3 5 MET A 0 GLN A 1 GLU A 94 LYS A 101 SITE 2 AC3 5 HOH A 414 CRYST1 69.350 49.850 72.750 90.00 94.45 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014420 0.000000 0.001122 0.00000 SCALE2 0.000000 0.020060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013787 0.00000