HEADER IMMUNE SYSTEM 15-FEB-18 6FR8 TITLE HA1.7 HUMAN T-CELL RECEPTOR SPECIFIC FOR INFLUENZA VIRUS EPITOPE TITLE 2 PKYVKQNTLKLAT PRESENTED BY HUMAN LEUKOCYTE ANTIGEN HLA-DR0101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL RECEPTOR HA1.7 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T-CELL RECEPTOR HA1.7 BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN T CELL RECEPTOR, HUMAN LEUKOCUTE ANTIGEN, INFLUENZA KEYWDS 2 HAEMAGGLUTININ EPITOPE, 3D STRUCTURE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.K.COLE REVDAT 3 17-JAN-24 6FR8 1 REMARK REVDAT 2 09-MAY-18 6FR8 1 JRNL REVDAT 1 18-APR-18 6FR8 0 JRNL AUTH C.J.HOLLAND,B.J.MACLACHLAN,V.BIANCHI,S.J.HESKETH,R.MORGAN, JRNL AUTH 2 O.VICKERY,A.M.BULEK,A.FULLER,A.GODKIN,A.K.SEWELL, JRNL AUTH 3 P.J.RIZKALLAH,S.WELLS,D.K.COLE JRNL TITL IN SILICOAND STRUCTURAL ANALYSES DEMONSTRATE THAT INTRINSIC JRNL TITL 2 PROTEIN MOTIONS GUIDE T CELL RECEPTOR COMPLEMENTARITY JRNL TITL 3 DETERMINING REGION LOOP FLEXIBILITY. JRNL REF FRONT IMMUNOL V. 9 674 2018 JRNL REFN ESSN 1664-3224 JRNL PMID 29696015 JRNL DOI 10.3389/FIMMU.2018.00674 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 18937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1019 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1352 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3505 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : 3.37000 REMARK 3 B33 (A**2) : -2.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.91000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.472 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.287 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.531 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3631 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3217 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4932 ; 1.939 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7502 ; 1.087 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 8.596 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;39.070 ;24.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 603 ;21.005 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;21.500 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4051 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 764 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1782 ; 0.598 ; 1.525 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1781 ; 0.598 ; 1.525 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2228 ; 1.078 ; 2.285 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2229 ; 1.078 ; 2.285 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1849 ; 0.751 ; 1.561 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1846 ; 0.555 ; 1.548 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2698 ; 0.907 ; 2.302 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3778 ; 4.760 ;17.183 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3779 ; 4.759 ;17.188 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 67.5715 4.2939 36.2862 REMARK 3 T TENSOR REMARK 3 T11: 0.3230 T22: 0.0027 REMARK 3 T33: 0.5870 T12: -0.0161 REMARK 3 T13: 0.0817 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 3.9365 L22: 3.8362 REMARK 3 L33: 7.9531 L12: -0.0081 REMARK 3 L13: -0.5255 L23: -0.2661 REMARK 3 S TENSOR REMARK 3 S11: -0.0975 S12: 0.0764 S13: 0.0460 REMARK 3 S21: 0.2176 S22: 0.0115 S23: 0.0478 REMARK 3 S31: -0.1167 S32: -0.0665 S33: 0.0860 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 87.4504 1.9368 6.5604 REMARK 3 T TENSOR REMARK 3 T11: 0.7567 T22: 0.6213 REMARK 3 T33: 0.5317 T12: -0.0497 REMARK 3 T13: 0.0865 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 8.2800 L22: 4.3836 REMARK 3 L33: 6.0647 L12: -1.3172 REMARK 3 L13: -0.0723 L23: -0.1674 REMARK 3 S TENSOR REMARK 3 S11: -0.0874 S12: 0.2360 S13: -0.3634 REMARK 3 S21: -0.2430 S22: 0.1057 S23: -0.1618 REMARK 3 S31: 0.3431 S32: 0.4226 S33: -0.0183 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 87.7895 8.4755 47.3693 REMARK 3 T TENSOR REMARK 3 T11: 0.3871 T22: 0.4118 REMARK 3 T33: 0.4942 T12: 0.0082 REMARK 3 T13: 0.0584 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 6.9645 L22: 4.7989 REMARK 3 L33: 3.7043 L12: -2.7006 REMARK 3 L13: -1.4255 L23: 2.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.1444 S12: -0.1121 S13: 0.2270 REMARK 3 S21: 0.2187 S22: 0.2048 S23: -0.3601 REMARK 3 S31: -0.0102 S32: 0.9833 S33: -0.0604 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): 95.9821 11.9563 17.6248 REMARK 3 T TENSOR REMARK 3 T11: 0.5798 T22: 0.7569 REMARK 3 T33: 0.6546 T12: -0.1630 REMARK 3 T13: 0.1830 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 2.9009 L22: 1.8466 REMARK 3 L33: 7.0812 L12: -0.6121 REMARK 3 L13: 3.1100 L23: -0.5871 REMARK 3 S TENSOR REMARK 3 S11: -0.2836 S12: 0.0394 S13: 0.1245 REMARK 3 S21: -0.2139 S22: 0.1259 S23: -0.2484 REMARK 3 S31: -0.4342 S32: 0.8203 S33: 0.1577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19994 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 69.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 1.10100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EH8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KSCN,0.1M BIS-TRIS, 20% PEG3350, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.94000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 155 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 0 CG - SD - CE ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG B 186 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 -80.86 -21.09 REMARK 500 SER A 51 32.06 -82.89 REMARK 500 ALA A 86 171.79 172.55 REMARK 500 LYS A 130 -159.79 -130.89 REMARK 500 SER A 131 56.71 -104.07 REMARK 500 ASP A 133 59.09 -67.49 REMARK 500 SER A 154 51.41 -104.64 REMARK 500 GLU A 198 49.76 -101.72 REMARK 500 PRO B 151 -178.10 -69.65 REMARK 500 ASP B 152 77.25 -68.23 REMARK 500 PRO B 180 7.24 -67.53 REMARK 500 ASP B 184 56.63 -96.90 REMARK 500 GLN B 201 59.19 -100.01 REMARK 500 THR B 223 69.64 -157.93 REMARK 500 ASP B 225 -69.19 -14.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 154 ASP A 155 141.42 REMARK 500 ASN A 189 ALA A 190 141.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 DBREF 6FR8 A 0 201 PDB 6FR8 6FR8 0 201 DBREF 6FR8 B 2 242 PDB 6FR8 6FR8 2 242 SEQRES 1 A 202 MET GLN SER VAL THR GLN LEU GLY SER HIS VAL SER VAL SEQRES 2 A 202 SER GLU GLY ALA LEU VAL LEU LEU ARG CYS ASN TYR SER SEQRES 3 A 202 SER SER VAL PRO PRO TYR LEU PHE TRP TYR VAL GLN TYR SEQRES 4 A 202 PRO ASN GLN GLY LEU GLN LEU LEU LEU LYS TYR THR SER SEQRES 5 A 202 ALA ALA THR LEU VAL LYS GLY ILE ASN GLY PHE GLU ALA SEQRES 6 A 202 GLU PHE LYS LYS SER GLU THR SER PHE HIS LEU THR LYS SEQRES 7 A 202 PRO SER ALA HIS MET SER ASP ALA ALA GLU TYR PHE CYS SEQRES 8 A 202 ALA VAL SER GLU SER PRO PHE GLY ASN GLU LYS LEU THR SEQRES 9 A 202 PHE GLY THR GLY THR ARG LEU THR ILE ILE PRO ASN ILE SEQRES 10 A 202 GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER SEQRES 11 A 202 LYS SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE SEQRES 12 A 202 ASP SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP SEQRES 13 A 202 VAL TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER SEQRES 14 A 202 MET ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN SEQRES 15 A 202 LYS SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER SEQRES 16 A 202 ILE ILE PRO GLU ASP THR PHE SEQRES 1 B 241 VAL LYS VAL THR GLN SER SER ARG TYR LEU VAL LYS ARG SEQRES 2 B 241 THR GLY GLU LYS VAL PHE LEU GLU CYS VAL GLN ASP MET SEQRES 3 B 241 ASP HIS GLU ASN MET PHE TRP TYR ARG GLN ASP PRO GLY SEQRES 4 B 241 LEU GLY LEU ARG LEU ILE TYR PHE SER TYR ASP VAL LYS SEQRES 5 B 241 MET LYS GLU LYS GLY ASP ILE PRO GLU GLY TYR SER VAL SEQRES 6 B 241 SER ARG GLU LYS LYS GLU ARG PHE SER LEU ILE LEU GLU SEQRES 7 B 241 SER ALA SER THR ASN GLN THR SER MET TYR LEU CYS ALA SEQRES 8 B 241 SER SER SER THR GLY LEU PRO TYR GLY TYR THR PHE GLY SEQRES 9 B 241 SER GLY THR ARG LEU THR VAL VAL GLU ASP LEU ASN LYS SEQRES 10 B 241 VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU SEQRES 11 B 241 ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS SEQRES 12 B 241 LEU ALA THR GLY PHE PHE PRO ASP HIS VAL GLU LEU SER SEQRES 13 B 241 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS SEQRES 14 B 241 THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN SEQRES 15 B 241 ASP SER ARG TYR SER LEU SER SER ARG LEU ARG VAL SER SEQRES 16 B 241 ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS SEQRES 17 B 241 GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP SEQRES 18 B 241 THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER SEQRES 19 B 241 ALA GLU ALA TRP GLY ARG ALA HET SO4 A 301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *31(H2 O) HELIX 1 AA1 ILE A 59 GLY A 61 5 3 HELIX 2 AA2 LYS A 68 THR A 71 5 4 HELIX 3 AA3 HIS A 81 ALA A 85 5 5 HELIX 4 AA4 ARG A 167 ASP A 170 5 4 HELIX 5 AA5 ALA A 186 ALA A 190 5 5 HELIX 6 AA6 SER B 82 THR B 86 5 5 HELIX 7 AA7 ASP B 115 VAL B 119 5 5 HELIX 8 AA8 SER B 130 GLN B 138 1 9 HELIX 9 AA9 ALA B 197 GLN B 201 1 5 SHEET 1 AA1 2 SER A 2 THR A 4 0 SHEET 2 AA1 2 ASN A 23 SER A 25 -1 O SER A 25 N SER A 2 SHEET 1 AA2 5 HIS A 9 SER A 13 0 SHEET 2 AA2 5 THR A 108 ILE A 113 1 O ILE A 113 N VAL A 12 SHEET 3 AA2 5 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 110 SHEET 4 AA2 5 TYR A 31 GLN A 37 -1 N TYR A 35 O PHE A 89 SHEET 5 AA2 5 LEU A 43 TYR A 49 -1 O LEU A 46 N TRP A 34 SHEET 1 AA3 4 HIS A 9 SER A 13 0 SHEET 2 AA3 4 THR A 108 ILE A 113 1 O ILE A 113 N VAL A 12 SHEET 3 AA3 4 ALA A 86 SER A 93 -1 N ALA A 86 O LEU A 110 SHEET 4 AA3 4 THR A 103 PHE A 104 -1 O THR A 103 N VAL A 92 SHEET 1 AA4 4 VAL A 18 LEU A 20 0 SHEET 2 AA4 4 SER A 72 LYS A 77 -1 O LEU A 75 N LEU A 20 SHEET 3 AA4 4 GLU A 63 LYS A 67 -1 N GLU A 63 O THR A 76 SHEET 4 AA4 4 LEU A 55 LYS A 57 -1 N VAL A 56 O ALA A 64 SHEET 1 AA5 8 VAL A 156 ILE A 158 0 SHEET 2 AA5 8 PHE A 171 SER A 180 -1 O TRP A 179 N TYR A 157 SHEET 3 AA5 8 VAL A 136 THR A 140 -1 N CYS A 137 O ALA A 178 SHEET 4 AA5 8 ALA A 122 ASP A 128 -1 N TYR A 124 O LEU A 138 SHEET 5 AA5 8 GLU B 123 GLU B 128 -1 O GLU B 128 N ARG A 127 SHEET 6 AA5 8 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 7 AA5 8 TYR B 187 SER B 196 -1 O SER B 191 N CYS B 144 SHEET 8 AA5 8 VAL B 169 THR B 171 -1 N CYS B 170 O ARG B 192 SHEET 1 AA6 8 CYS A 162 MET A 166 0 SHEET 2 AA6 8 PHE A 171 SER A 180 -1 O PHE A 171 N MET A 166 SHEET 3 AA6 8 VAL A 136 THR A 140 -1 N CYS A 137 O ALA A 178 SHEET 4 AA6 8 ALA A 122 ASP A 128 -1 N TYR A 124 O LEU A 138 SHEET 5 AA6 8 GLU B 123 GLU B 128 -1 O GLU B 128 N ARG A 127 SHEET 6 AA6 8 LYS B 139 PHE B 149 -1 O VAL B 143 N PHE B 127 SHEET 7 AA6 8 TYR B 187 SER B 196 -1 O SER B 191 N CYS B 144 SHEET 8 AA6 8 LEU B 176 LYS B 177 -1 N LEU B 176 O SER B 188 SHEET 1 AA7 2 VAL B 4 GLN B 6 0 SHEET 2 AA7 2 CYS B 23 GLN B 25 -1 O VAL B 24 N THR B 5 SHEET 1 AA8 6 TYR B 10 ARG B 14 0 SHEET 2 AA8 6 THR B 108 VAL B 113 1 O THR B 111 N LEU B 11 SHEET 3 AA8 6 SER B 87 SER B 94 -1 N SER B 87 O LEU B 110 SHEET 4 AA8 6 ASN B 31 ASP B 38 -1 N TYR B 35 O LEU B 90 SHEET 5 AA8 6 GLY B 42 SER B 49 -1 O ARG B 44 N ARG B 36 SHEET 6 AA8 6 GLU B 56 LYS B 57 -1 O GLU B 56 N PHE B 48 SHEET 1 AA9 4 TYR B 10 ARG B 14 0 SHEET 2 AA9 4 THR B 108 VAL B 113 1 O THR B 111 N LEU B 11 SHEET 3 AA9 4 SER B 87 SER B 94 -1 N SER B 87 O LEU B 110 SHEET 4 AA9 4 TYR B 102 PHE B 104 -1 O THR B 103 N SER B 93 SHEET 1 AB1 3 VAL B 19 LEU B 21 0 SHEET 2 AB1 3 PHE B 74 LEU B 78 -1 O LEU B 76 N LEU B 21 SHEET 3 AB1 3 TYR B 64 ARG B 68 -1 N SER B 65 O ILE B 77 SHEET 1 AB2 4 LYS B 163 GLU B 164 0 SHEET 2 AB2 4 VAL B 154 VAL B 160 -1 N VAL B 160 O LYS B 163 SHEET 3 AB2 4 HIS B 206 PHE B 213 -1 O GLN B 210 N SER B 157 SHEET 4 AB2 4 GLN B 232 TRP B 239 -1 O VAL B 234 N VAL B 211 SSBOND 1 CYS A 22 CYS A 90 1555 1555 1.98 SSBOND 2 CYS A 137 CYS A 187 1555 1555 2.06 SSBOND 3 CYS A 162 CYS B 170 1555 1555 2.11 SSBOND 4 CYS B 23 CYS B 91 1555 1555 2.02 SSBOND 5 CYS B 144 CYS B 209 1555 1555 2.08 CISPEP 1 PHE B 150 PRO B 151 0 -14.02 SITE 1 AC1 6 SER A 2 VAL A 3 THR A 4 ASN A 23 SITE 2 AC1 6 TYR A 24 SER A 25 CRYST1 69.530 49.880 72.890 90.00 94.26 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014382 0.000000 0.001071 0.00000 SCALE2 0.000000 0.020048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013757 0.00000